Result of FASTA (omim) for
pFN21AB6166
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6166, 603 aa
1>>>pF1KB6166 603 - 603 aa - 603 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5514+/-0.000505; mu= 13.0153+/- 0.031
mean_var=99.2077+/-20.353, 0's: 0 Z-trim(110.1): 408 B-trim: 0 in 0/52
Lambda= 0.128766
statistics sampled from 18007 (18421) to 18007 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.216), width: 16
Scan time: 9.540
The best scores are: opt bits E(85289)
NP_003288 (OMIM: 601529) nuclear receptor subfamil ( 603) 3977 750.1 4.8e-216
XP_005269190 (OMIM: 601529) PREDICTED: nuclear rec ( 598) 3926 740.6 3.4e-213
XP_011537018 (OMIM: 601529) PREDICTED: nuclear rec ( 521) 3384 639.9 6.2e-183
XP_006719647 (OMIM: 601529) PREDICTED: nuclear rec ( 557) 3099 587.0 5.7e-167
NP_001120834 (OMIM: 601529) nuclear receptor subfa ( 483) 3075 582.5 1.1e-165
NP_001027458 (OMIM: 601529) nuclear receptor subfa ( 467) 3067 581.0 3e-165
XP_006719648 (OMIM: 601529) PREDICTED: nuclear rec ( 426) 2763 524.5 2.8e-148
XP_011537019 (OMIM: 601529) PREDICTED: nuclear rec ( 507) 2133 407.5 5.5e-113
XP_016862609 (OMIM: 601426) PREDICTED: nuclear rec ( 596) 1488 287.7 7.4e-77
NP_001278623 (OMIM: 601426) nuclear receptor subfa ( 596) 1488 287.7 7.4e-77
XP_011532365 (OMIM: 601426) PREDICTED: nuclear rec ( 629) 1488 287.7 7.8e-77
XP_011532368 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 1470 284.4 7.7e-76
XP_011532367 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 1470 284.4 7.7e-76
NP_003289 (OMIM: 601426) nuclear receptor subfamil ( 615) 1470 284.4 7.7e-76
XP_011532366 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 1470 284.4 7.7e-76
XP_016862608 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 1470 284.4 8.1e-76
XP_016862607 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 1470 284.4 8.1e-76
XP_011532363 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 1470 284.4 8.1e-76
XP_011532361 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 1470 284.4 8.1e-76
XP_011532360 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 1470 284.4 8.1e-76
NP_008848 (OMIM: 180247) retinoic acid receptor RX ( 463) 470 98.6 5.1e-20
NP_001243499 (OMIM: 180247) retinoic acid receptor ( 340) 465 97.6 7.5e-20
NP_001243500 (OMIM: 180247) retinoic acid receptor ( 340) 465 97.6 7.5e-20
XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP ( 273) 447 94.2 6.3e-19
NP_001138628 (OMIM: 107773,615779) COUP transcript ( 261) 442 93.2 1.2e-18
NP_001138629 (OMIM: 107773,615779) COUP transcript ( 261) 442 93.2 1.2e-18
NP_001138627 (OMIM: 107773,615779) COUP transcript ( 281) 442 93.2 1.2e-18
XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 439 92.8 2.5e-18
XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 439 92.8 2.7e-18
NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 439 92.8 3.1e-18
NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 439 92.8 3.1e-18
NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 436 92.2 3.3e-18
NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 436 92.2 3.9e-18
NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 436 92.2 4.1e-18
NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 432 91.4 5.3e-18
XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 433 91.7 5.5e-18
NP_849181 (OMIM: 125850,125853,600281,616026) hepa ( 417) 431 91.3 7.1e-18
NP_849180 (OMIM: 125850,125853,600281,616026) hepa ( 464) 431 91.3 7.8e-18
NP_000448 (OMIM: 125850,125853,600281,616026) hepa ( 474) 431 91.3 7.9e-18
NP_004124 (OMIM: 605966) hepatocyte nuclear factor ( 445) 424 90.0 1.8e-17
NP_005225 (OMIM: 132880) nuclear receptor subfamil ( 404) 422 89.6 2.2e-17
NP_001274113 (OMIM: 125850,125853,600281,616026) h ( 392) 421 89.4 2.4e-17
NP_001025175 (OMIM: 125850,125853,600281,616026) h ( 395) 421 89.4 2.5e-17
NP_005645 (OMIM: 132890,615722) COUP transcription ( 423) 421 89.4 2.6e-17
NP_001274111 (OMIM: 125850,125853,600281,616026) h ( 439) 421 89.4 2.7e-17
NP_001025174 (OMIM: 125850,125853,600281,616026) h ( 442) 421 89.4 2.7e-17
NP_001274112 (OMIM: 125850,125853,600281,616026) h ( 449) 421 89.4 2.7e-17
NP_787110 (OMIM: 125850,125853,600281,616026) hepa ( 452) 421 89.5 2.7e-17
NP_001245284 (OMIM: 125850,125853,600281,616026) h ( 467) 421 89.5 2.8e-17
XP_005260464 (OMIM: 125850,125853,600281,616026) P ( 513) 421 89.5 3.1e-17
>>NP_003288 (OMIM: 601529) nuclear receptor subfamily 2 (603 aa)
initn: 3977 init1: 3977 opt: 3977 Z-score: 3999.6 bits: 750.1 E(85289): 4.8e-216
Smith-Waterman score: 3977; 100.0% identity (100.0% similar) in 603 aa overlap (1-603:1-603)
10 20 30 40 50 60
pF1KB6 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB6 PDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIG
550 560 570 580 590 600
pF1KB6 HSI
:::
NP_003 HSI
>>XP_005269190 (OMIM: 601529) PREDICTED: nuclear recepto (598 aa)
initn: 3072 init1: 3072 opt: 3926 Z-score: 3948.5 bits: 740.6 E(85289): 3.4e-213
Smith-Waterman score: 3926; 99.2% identity (99.2% similar) in 603 aa overlap (1-603:1-598)
10 20 30 40 50 60
pF1KB6 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIF
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_005 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQ-----ERRKLLMEHIF
430 440 450 460 470
490 500 510 520 530 540
pF1KB6 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTY
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB6 PDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIG
540 550 560 570 580 590
pF1KB6 HSI
:::
XP_005 HSI
>>XP_011537018 (OMIM: 601529) PREDICTED: nuclear recepto (521 aa)
initn: 3453 init1: 3384 opt: 3384 Z-score: 3405.2 bits: 639.9 E(85289): 6.2e-183
Smith-Waterman score: 3384; 99.6% identity (99.8% similar) in 513 aa overlap (1-513:1-513)
10 20 30 40 50 60
pF1KB6 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTY
:::::::::::::::::::::::::::::: .:
XP_011 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPGYPDYYSDCQL
490 500 510 520
550 560 570 580 590 600
pF1KB6 PDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIG
>>XP_006719647 (OMIM: 601529) PREDICTED: nuclear recepto (557 aa)
initn: 3151 init1: 3082 opt: 3099 Z-score: 3118.6 bits: 587.0 E(85289): 5.7e-167
Smith-Waterman score: 3569; 92.4% identity (92.4% similar) in 603 aa overlap (1-603:1-557)
10 20 30 40 50 60
pF1KB6 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIF
:::::::::::::::::::::::::::::::::::::::::::::
XP_006 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQD---------------
430 440 450 460
490 500 510 520 530 540
pF1KB6 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTY
:::::::::::::::::::::::::::::
XP_006 -------------------------------HPSLENMEQIEKFQEKAYVEFQDYITKTY
470 480 490
550 560 570 580 590 600
pF1KB6 PDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIG
500 510 520 530 540 550
pF1KB6 HSI
:::
XP_006 HSI
>>NP_001120834 (OMIM: 601529) nuclear receptor subfamily (483 aa)
initn: 3075 init1: 3075 opt: 3075 Z-score: 3095.5 bits: 582.5 E(85289): 1.1e-165
Smith-Waterman score: 3075; 100.0% identity (100.0% similar) in 465 aa overlap (1-465:1-465)
10 20 30 40 50 60
pF1KB6 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIF
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDAKVIAALIHFTRRAI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTY
NP_001 TDL
>>NP_001027458 (OMIM: 601529) nuclear receptor subfamily (467 aa)
initn: 3067 init1: 3067 opt: 3067 Z-score: 3087.7 bits: 581.0 E(85289): 3e-165
Smith-Waterman score: 3067; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KB6 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIF
::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQAEG
430 440 450 460
490 500 510 520 530 540
pF1KB6 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTY
>>XP_006719648 (OMIM: 601529) PREDICTED: nuclear recepto (426 aa)
initn: 2763 init1: 2763 opt: 2763 Z-score: 2783.1 bits: 524.5 E(85289): 2.8e-148
Smith-Waterman score: 2763; 100.0% identity (100.0% similar) in 426 aa overlap (178-603:1-426)
150 160 170 180 190 200
pF1KB6 SCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKI
::::::::::::::::::::::::::::::
XP_006 MKQDSVQCERKPIEVSREKSSNCAASTEKI
10 20 30
210 220 230 240 250 260
pF1KB6 YIRKDLRSPLTATPTFVTDSESTRSTGLLDSGMFMNIHPSGVKTESAVLMTSDKAESCQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YIRKDLRSPLTATPTFVTDSESTRSTGLLDSGMFMNIHPSGVKTESAVLMTSDKAESCQG
40 50 60 70 80 90
270 280 290 300 310 320
pF1KB6 DLSTLANVVTSLANLGKTKDLSQNSNEMSMIESLSNDDTSLCEFQEMQTNGDVSRAFDTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DLSTLANVVTSLANLGKTKDLSQNSNEMSMIESLSNDDTSLCEFQEMQTNGDVSRAFDTL
100 110 120 130 140 150
330 340 350 360 370 380
pF1KB6 AKALNPGESTACQSSVAGMEGSVHLITGDSSINYTEKEGPLLSDSHVAFRLTMPSPMPEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AKALNPGESTACQSSVAGMEGSVHLITGDSSINYTEKEGPLLSDSHVAFRLTMPSPMPEY
160 170 180 190 200 210
390 400 410 420 430 440
pF1KB6 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV
220 230 240 250 260 270
450 460 470 480 490 500
pF1KB6 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL
280 290 300 310 320 330
510 520 530 540 550 560
pF1KB6 FSPDHPSLENMEQIEKFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FSPDHPSLENMEQIEKFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEE
340 350 360 370 380 390
570 580 590 600
pF1KB6 LFFKGLIGNIRIDSVIPHILKMEPADYNSQIIGHSI
::::::::::::::::::::::::::::::::::::
XP_006 LFFKGLIGNIRIDSVIPHILKMEPADYNSQIIGHSI
400 410 420
>>XP_011537019 (OMIM: 601529) PREDICTED: nuclear recepto (507 aa)
initn: 2133 init1: 2133 opt: 2133 Z-score: 2149.4 bits: 407.5 E(85289): 5.5e-113
Smith-Waterman score: 3146; 84.1% identity (84.1% similar) in 603 aa overlap (1-603:1-507)
10 20 30 40 50 60
pF1KB6 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSIN
::::::::::::::::::::::
XP_011 LSNDDTSLCEFQEMQTNGDVSR--------------------------------------
310 320
370 380 390 400 410 420
pF1KB6 YTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
::
XP_011 ----------------------------------------------------------QE
430 440 450 460 470 480
pF1KB6 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIF
330 340 350 360 370 380
490 500 510 520 530 540
pF1KB6 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTY
390 400 410 420 430 440
550 560 570 580 590 600
pF1KB6 PDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIG
450 460 470 480 490 500
pF1KB6 HSI
:::
XP_011 HSI
>>XP_016862609 (OMIM: 601426) PREDICTED: nuclear recepto (596 aa)
initn: 2447 init1: 1238 opt: 1488 Z-score: 1500.8 bits: 287.7 E(85289): 7.4e-77
Smith-Waterman score: 2357; 62.7% identity (82.4% similar) in 601 aa overlap (11-603:17-596)
10 20 30 40 50
pF1KB6 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQ-FILTNHDGST
. : .:::.::::::::::::.: . . :: ::::. ::.
XP_016 MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 PSKVILARQDSTPGK-VFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDL
.::::: ... .: ...:: : ... ..: . :...: :: : : .: .
XP_016 TGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDV---QRP-QVVEY
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQR
::::::::::::::::.:::::::::::.::::.::::...:::::::::::::.:::..
XP_016 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 CIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRS
:. .:::..::: ::::..:.::: :::::::::::::::::::: ::::::.:....:.
XP_016 CLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 TGLLDSGMFMNIHPSGVKTESAVLMTSD-KAESCQGDLSTLANVVTSLANLGKTKDLSQN
::::: ::..::. .. ...::...: :::. :: :.::::::::::::.
XP_016 TGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLS--------
240 250 260 270 280
300 310 320 330 340
pF1KB6 SNEMSMIESLSNDDTSLCEFQ-EMQTNGDVSRAFDTLAKALNPGESTACQSSVAGME---
:::.: ::: :.: : :. ....::::::::::: .:.. : . :..
XP_016 -------ESLNNGDTS--EIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSG
290 300 310 320 330
350 360 370 380 390 400
pF1KB6 -GSVHLITGDSSINYTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMH
::.:.:. :.: : :::::::.::.:.:::::::::::::::: ::::::::::::
XP_016 GGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMH
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB6 WALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDK
:: :::.::::::. . :::.: :::::::::::: :::...::::..:: :.::.:.::
XP_016 WARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDK
400 410 420 430 440 450
470 480 490 500 510 520
pF1KB6 MSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQE
.: .: : .::::.:::::::::.:: ::::::::::::::::::::.: . :::::::
XP_016 LSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQE
460 470 480 490 500 510
530 540 550 560 570 580
pF1KB6 KAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHI
:: .:.:::. ::: .:::::.:.:.::::::::...::::::: :::::. :::.::.:
XP_016 KAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYI
520 530 540 550 560 570
590 600
pF1KB6 LKMEPADYNSQIIGHSI
:::: :.::.:: : :.
XP_016 LKMETAEYNGQITGASL
580 590
>>NP_001278623 (OMIM: 601426) nuclear receptor subfamily (596 aa)
initn: 2447 init1: 1238 opt: 1488 Z-score: 1500.8 bits: 287.7 E(85289): 7.4e-77
Smith-Waterman score: 2357; 62.7% identity (82.4% similar) in 601 aa overlap (11-603:17-596)
10 20 30 40 50
pF1KB6 MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQ-FILTNHDGST
. : .:::.::::::::::::.: . . :: ::::. ::.
NP_001 MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 PSKVILARQDSTPGK-VFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDL
.::::: ... .: ...:: : ... ..: . :...: :: : : .: .
NP_001 TGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDV---QRP-QVVEY
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQR
::::::::::::::::.:::::::::::.::::.::::...:::::::::::::.:::..
NP_001 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 CIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRS
:. .:::..::: ::::..:.::: :::::::::::::::::::: ::::::.:....:.
NP_001 CLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 TGLLDSGMFMNIHPSGVKTESAVLMTSD-KAESCQGDLSTLANVVTSLANLGKTKDLSQN
::::: ::..::. .. ...::...: :::. :: :.::::::::::::.
NP_001 TGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLS--------
240 250 260 270 280
300 310 320 330 340
pF1KB6 SNEMSMIESLSNDDTSLCEFQ-EMQTNGDVSRAFDTLAKALNPGESTACQSSVAGME---
:::.: ::: :.: : :. ....::::::::::: .:.. : . :..
NP_001 -------ESLNNGDTS--EIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSG
290 300 310 320 330
350 360 370 380 390 400
pF1KB6 -GSVHLITGDSSINYTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMH
::.:.:. :.: : :::::::.::.:.:::::::::::::::: ::::::::::::
NP_001 GGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMH
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB6 WALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDK
:: :::.::::::. . :::.: :::::::::::: :::...::::..:: :.::.:.::
NP_001 WARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDK
400 410 420 430 440 450
470 480 490 500 510 520
pF1KB6 MSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQE
.: .: : .::::.:::::::::.:: ::::::::::::::::::::.: . :::::::
NP_001 LSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQE
460 470 480 490 500 510
530 540 550 560 570 580
pF1KB6 KAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHI
:: .:.:::. ::: .:::::.:.:.::::::::...::::::: :::::. :::.::.:
NP_001 KAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYI
520 530 540 550 560 570
590 600
pF1KB6 LKMEPADYNSQIIGHSI
:::: :.::.:: : :.
NP_001 LKMETAEYNGQITGASL
580 590
603 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:45:52 2016 done: Sun Nov 6 14:45:54 2016
Total Scan time: 9.540 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]