FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6106, 601 aa
  1>>>pF1KB6106 601 - 601 aa - 601 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4514+/-0.000794; mu= 9.9277+/- 0.048
 mean_var=111.7758+/-22.279, 0's: 0 Z-trim(110.9): 5  B-trim: 0 in 0/54
 Lambda= 0.121311
 statistics sampled from 11941 (11943) to 11941 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.367), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS47751.2 NUB1 gene_id:51667|Hs108|chr7          ( 625) 3942 700.6 1.6e-201
CCDS59089.1 NUB1 gene_id:51667|Hs108|chr7          ( 639) 2982 532.6  6e-151


>>CCDS47751.2 NUB1 gene_id:51667|Hs108|chr7               (625 aa)
 initn: 3942 init1: 3942 opt: 3942  Z-score: 3731.6  bits: 700.6 E(32554): 1.6e-201
Smith-Waterman score: 3942; 100.0% identity (100.0% similar) in 601 aa overlap (1-601:25-625)

                                       10        20        30      
pF1KB6                         MAQKKYLQAKLTQFLREDRIQLWKPPYTDENKKVGL
                               ::::::::::::::::::::::::::::::::::::
CCDS47 MKTNGGRCRIRALCWSRREWRGAGMAQKKYLQAKLTQFLREDRIQLWKPPYTDENKKVGL
               10        20        30        40        50        60

         40        50        60        70        80        90      
pF1KB6 ALKDLAKQYSDRLECCENEVEKVIEEIRCKAIERGTGNDNYRTTGIATIEVFLPPRLKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ALKDLAKQYSDRLECCENEVEKVIEEIRCKAIERGTGNDNYRTTGIATIEVFLPPRLKKD
               70        80        90       100       110       120

        100       110       120       130       140       150      
pF1KB6 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL
              130       140       150       160       170       180

        160       170       180       190       200       210      
pF1KB6 ELKQSEEDARKNFQLEEEEQNEAKLKEKQIQRTKRGLEILAKRAAETVVDPEMTPYLDIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ELKQSEEDARKNFQLEEEEQNEAKLKEKQIQRTKRGLEILAKRAAETVVDPEMTPYLDIA
              190       200       210       220       230       240

        220       230       240       250       260       270      
pF1KB6 NQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDT
              250       260       270       280       290       300

        280       290       300       310       320       330      
pF1KB6 VDNYAVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VDNYAVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEK
              310       320       330       340       350       360

        340       350       360       370       380       390      
pF1KB6 VLFLRLYLLQGIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VLFLRLYLLQGIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLG
              370       380       390       400       410       420

        400       410       420       430       440       450      
pF1KB6 LRACDGNVDHAATHITNRREELAQIRKEEKEKKRRRLENIRFLKGMGYSTHAAQQILLSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LRACDGNVDHAATHITNRREELAQIRKEEKEKKRRRLENIRFLKGMGYSTHAAQQILLSN
              430       440       450       460       470       480

        460       470       480       490       500       510      
pF1KB6 PQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALVAEAALRVFRGNVQLAAQTLAHNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALVAEAALRVFRGNVQLAAQTLAHNG
              490       500       510       520       530       540

        520       530       540       550       560       570      
pF1KB6 GSLPPELPLSPEDSLSPPATSPSDSAGTSSASTDEDMETEAVNEILEDIPEHEEDYLDST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GSLPPELPLSPEDSLSPPATSPSDSAGTSSASTDEDMETEAVNEILEDIPEHEEDYLDST
              550       560       570       580       590       600

        580       590       600 
pF1KB6 LEDEEIIIAEYLSYVENRKSATKKN
       :::::::::::::::::::::::::
CCDS47 LEDEEIIIAEYLSYVENRKSATKKN
              610       620     

>>CCDS59089.1 NUB1 gene_id:51667|Hs108|chr7               (639 aa)
 initn: 3026 init1: 2979 opt: 2982  Z-score: 2823.4  bits: 532.6 E(32554): 6e-151
Smith-Waterman score: 3904; 97.7% identity (97.7% similar) in 615 aa overlap (1-601:25-639)

                                       10        20        30      
pF1KB6                         MAQKKYLQAKLTQFLREDRIQLWKPPYTDENKKVGL
                               ::::::::::::::::::::::::::::::::::::
CCDS59 MKTNGGRCRIRALCWSRREWRGAGMAQKKYLQAKLTQFLREDRIQLWKPPYTDENKKVGL
               10        20        30        40        50        60

         40        50        60        70        80        90      
pF1KB6 ALKDLAKQYSDRLECCENEVEKVIEEIRCKAIERGTGNDNYRTTGIATIEVFLPPRLKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ALKDLAKQYSDRLECCENEVEKVIEEIRCKAIERGTGNDNYRTTGIATIEVFLPPRLKKD
               70        80        90       100       110       120

        100       110       120       130       140       150      
pF1KB6 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL
              130       140       150       160       170       180

        160       170       180       190       200       210      
pF1KB6 ELKQSEEDARKNFQLEEEEQNEAKLKEKQIQRTKRGLEILAKRAAETVVDPEMTPYLDIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ELKQSEEDARKNFQLEEEEQNEAKLKEKQIQRTKRGLEILAKRAAETVVDPEMTPYLDIA
              190       200       210       220       230       240

        220       230       240       250       260       270      
pF1KB6 NQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDT
              250       260       270       280       290       300

        280       290       300       310       320       330      
pF1KB6 VDNYAVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VDNYAVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEK
              310       320       330       340       350       360

        340       350       360       370       380       390      
pF1KB6 VLFLRLYLLQGIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VLFLRLYLLQGIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLG
              370       380       390       400       410       420

        400       410       420       430       440       450      
pF1KB6 LRACDGNVDHAATHITNRREELAQIRKEEKEKKRRRLENIRFLKGMGYSTHAAQQ-----
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS59 LRACDGNVDHAATHITNRREELAQIRKEEKEKKRRRLENIRFLKGMGYSTHAAQQVLHAA
              430       440       450       460       470       480

                      460       470       480       490       500  
pF1KB6 ---------ILLSNPQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALVAEAALRVFR
                :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SGNLDEALKILLSNPQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALVAEAALRVFR
              490       500       510       520       530       540

            510       520       530       540       550       560  
pF1KB6 GNVQLAAQTLAHNGGSLPPELPLSPEDSLSPPATSPSDSAGTSSASTDEDMETEAVNEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GNVQLAAQTLAHNGGSLPPELPLSPEDSLSPPATSPSDSAGTSSASTDEDMETEAVNEIL
              550       560       570       580       590       600

            570       580       590       600 
pF1KB6 EDIPEHEEDYLDSTLEDEEIIIAEYLSYVENRKSATKKN
       :::::::::::::::::::::::::::::::::::::::
CCDS59 EDIPEHEEDYLDSTLEDEEIIIAEYLSYVENRKSATKKN
              610       620       630         




601 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:29:31 2016 done: Mon Nov  7 17:29:31 2016
 Total Scan time:  3.060 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]