FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5970, 560 aa
  1>>>pF1KB5970 560 - 560 aa - 560 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5763+/-0.000322; mu= 4.5948+/- 0.020
 mean_var=202.2846+/-41.650, 0's: 0 Z-trim(122.6): 24  B-trim: 312 in 1/55
 Lambda= 0.090176
 statistics sampled from 41064 (41095) to 41064 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.482), width:  16
 Scan time: 13.650

The best scores are:                                      opt bits E(85289)
NP_000470 (OMIM: 261550,600957) muellerian-inhibit ( 560) 3811 508.3 2.6e-143
NP_001483 (OMIM: 187500,208530,217095,602880,61385 ( 372)  231 42.4  0.0031


>>NP_000470 (OMIM: 261550,600957) muellerian-inhibiting   (560 aa)
 initn: 3811 init1: 3811 opt: 3811  Z-score: 2693.8  bits: 508.3 E(85289): 2.6e-143
Smith-Waterman score: 3811; 100.0% identity (100.0% similar) in 560 aa overlap (1-560:1-560)

               10        20        30        40        50        60
pF1KB5 MRDLPLTSLALVLSALGALLGTEALRAEEPAVGTSGLIFREDLDWPPGSPQEPLCLVALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRDLPLTSLALVLSALGALLGTEALRAEEPAVGTSGLIFREDLDWPPGSPQEPLCLVALG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GDSNGSSSPLRVVGALSAYEQAFLGAVQRARWGPRDLATFGVCNTGDRQAALPSLRRLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GDSNGSSSPLRVVGALSAYEQAFLGAVQRARWGPRDLATFGVCNTGDRQAALPSLRRLGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 WLRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 WLRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LPGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARLQALLFGDDHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LPGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARLQALLFGDDHR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 CFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LRVPPARASAPRLALDPDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTGDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LRVPPARASAPRLALDPDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTGDP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 APLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARLLALCPGGPGGLGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 APLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARLLALCPGGPGGLGD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 PLRALLLLKALQGLRVEWRGRDPRGPGRAQRSAGATAADGPCALRELSVDLRAERSVLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PLRALLLLKALQGLRVEWRGRDPRGPGRAQRSAGATAADGPCALRELSVDLRAERSVLIP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ETYQANNCQGVCGWPQSDRNPRYGNHVVLLLKMQARGAALARPPCCVPTAYAGKLLISLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ETYQANNCQGVCGWPQSDRNPRYGNHVVLLLKMQARGAALARPPCCVPTAYAGKLLISLS
              490       500       510       520       530       540

              550       560
pF1KB5 EERISAHHVPNMVATECGCR
       ::::::::::::::::::::
NP_000 EERISAHHVPNMVATECGCR
              550       560

>>NP_001483 (OMIM: 187500,208530,217095,602880,613854) e  (372 aa)
 initn: 282 init1:  77 opt: 231  Z-score: 179.2  bits: 42.4 E(85289): 0.0031
Smith-Waterman score: 271; 29.1% identity (45.8% similar) in 426 aa overlap (152-560:2-372)

             130       140       150       160       170       180 
pF1KB5 LRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAGL
                                     ::   ::    ::.:     : . .::: .
NP_001                              MPPPQQGPCGHHLLLLLALLLPSLPLTRAPV
                                            10        20        30 

             190       200       210       220       230        240
pF1KB5 PGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARL-QALLFGDDHR
       : .    :.      .   :.: :: :   .  ..       ::   :  :    :.   
NP_001 PPG----PAAALLQALGLRDEPQGAPRLRPVPPVMW------RLFRRRDPQETRSGS---
                  40        50        60              70           

              250       260       270       280       290       300
pF1KB5 CFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRA
          : .:.. : :  .   : . :..  :   : : .      : ::       : .   
NP_001 --RRTSPGVTLQP-CHVEELGVAGNI--VRHIPDRGAPTRASEPASAAGHCPEWTVVFDL
         80         90       100         110       120       130   

               310        320       330       340       350        
pF1KB5 LRVPPA-RASAPRLALD-PDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTG
         : :: : :  :: :    : :. :.:  .::   : .    : .:  .:::  . . :
NP_001 SAVEPAERPSRARLELRFAAAAAAAPEGGWELSVAQAGQG--AGADPGPVLLRQLVPALG
           140       150       160       170         180       190 

      360       370       380       390       400        410       
pF1KB5 DPAPLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARL-LALCPGGPGG
        :                  : ::: .::   :.      :. :   :: ::: : .:..
NP_001 PP------------------VRAELLGAAWA-RN------ASWPRSLRLALALRPRAPAA
                               200              210       220      

       420       430       440          450       460          470 
pF1KB5 LGDPLRALLLLKALQGLRVEWRGRDPR--GP-GRAQRSAGATAADGP---CALRELSVDL
        .   .: ::: .:          :::   : .: .:.:  . . ::   :  :.: :..
NP_001 CARLAEASLLLVTL----------DPRLCHPLARPRRDAEPVLGGGPGGACRARRLYVSF
        230       240                 250       260       270      

                480       490          500       510       520     
pF1KB5 RA---ERSVLIPETYQANNCQGVCGWP---QSDRNPRYGNHVVLLLKMQARGAALARPPC
       :    .: :. :. . :: ::: :. :   ... .:   ::.::   :.: . . :  ::
NP_001 REVGWHRWVIAPRGFLANYCQGQCALPVALSGSGGPPALNHAVLRALMHAAAPGAADLPC
        280       290       300       310       320       330      

         530        540       550       560
pF1KB5 CVPTAYAG-KLLISLSEERISAHHVPNMVATECGCR
       :::.  .  ..:.  . . .  ..  .::. :::::
NP_001 CVPARLSPISVLFFDNSDNVVLRQYEDMVVDECGCR
        340       350       360       370  




560 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:35:11 2016 done: Sun Nov  6 13:35:13 2016
 Total Scan time: 13.650 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]