FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5970, 560 aa
  1>>>pF1KB5970 560 - 560 aa - 560 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1720+/-0.000752; mu= 6.9725+/- 0.045
 mean_var=174.1479+/-35.739, 0's: 0 Z-trim(115.3): 32  B-trim: 13 in 1/50
 Lambda= 0.097189
 statistics sampled from 15824 (15854) to 15824 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.487), width:  16
 Scan time:  4.520

The best scores are:                                      opt bits E(32554)
CCDS12085.1 AMH gene_id:268|Hs108|chr19            ( 560) 3806 545.6  6e-155


>>CCDS12085.1 AMH gene_id:268|Hs108|chr19                 (560 aa)
 initn: 3806 init1: 3806 opt: 3806  Z-score: 2895.2  bits: 545.6 E(32554): 6e-155
Smith-Waterman score: 3806; 99.8% identity (100.0% similar) in 560 aa overlap (1-560:1-560)

               10        20        30        40        50        60
pF1KB5 MRDLPLTSLALVLSALGALLGTEALRAEEPAVGTSGLIFREDLDWPPGSPQEPLCLVALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MRDLPLTSLALVLSALGALLGTEALRAEEPAVGTSGLIFREDLDWPPGSPQEPLCLVALG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GDSNGSSSPLRVVGALSAYEQAFLGAVQRARWGPRDLATFGVCNTGDRQAALPSLRRLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GDSNGSSSPLRVVGALSAYEQAFLGAVQRARWGPRDLATFGVCNTGDRQAALPSLRRLGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 WLRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WLRDPGGQRLVVLHLEEVTWEPTPSLRFQEPPPGGAGPPELALLVLYPGPGPEVTVTRAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LPGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARLQALLFGDDHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPGAQSLCPSRDTRYLVLAVDRPAGAWRGSGLALTLQPRGEDSRLSTARLQALLFGDDHR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 CFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CFTRMTPALLLLPRSEPAPLPAHGQLDTVPFPPPRPSAELEESPPSADPFLETLTRLVRA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LRVPPARASAPRLALDPDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTGDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LRVPPARASAPRLALDPDALAGFPQGLVNLSDPAALERLLDGEEPLLLLLRPTAATTGDP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 APLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARLLALCPGGPGGLGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APLHDPTSAPWATALARRVAAELQAAAAELRSLPGLPPATAPLLARLLALCPGGPGGLGD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 PLRALLLLKALQGLRVEWRGRDPRGPGRAQRSAGATAADGPCALRELSVDLRAERSVLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PLRALLLLKALQGLRVEWRGRDPRGPGRAQRSAGATAADGPCALRELSVDLRAERSVLIP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ETYQANNCQGVCGWPQSDRNPRYGNHVVLLLKMQARGAALARPPCCVPTAYAGKLLISLS
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS12 ETYQANNCQGVCGWPQSDRNPRYGNHVVLLLKMQVRGAALARPPCCVPTAYAGKLLISLS
              490       500       510       520       530       540

              550       560
pF1KB5 EERISAHHVPNMVATECGCR
       ::::::::::::::::::::
CCDS12 EERISAHHVPNMVATECGCR
              550       560




560 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:35:10 2016 done: Sun Nov  6 13:35:11 2016
 Total Scan time:  4.520 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]