Result of FASTA (ccds) for
pFN21AB5860
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5860, 490 aa
1>>>pF1KB5860 490 - 490 aa - 490 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4061+/-0.000896; mu= 13.1858+/- 0.054
mean_var=90.3304+/-18.168, 0's: 0 Z-trim(108.0): 37 B-trim: 0 in 0/49
Lambda= 0.134945
statistics sampled from 9896 (9928) to 9896 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.305), width: 16
Scan time: 1.690
The best scores are: opt bits E(32554)
CCDS1447.1 MDM4 gene_id:4194|Hs108|chr1 ( 490) 3293 651.2 7.2e-187
CCDS73009.1 MDM4 gene_id:4194|Hs108|chr1 ( 392) 2498 496.4 2.3e-140
CCDS73008.1 MDM4 gene_id:4194|Hs108|chr1 ( 267) 1502 302.4 3.9e-82
CCDS55674.1 MDM4 gene_id:4194|Hs108|chr1 ( 440) 1497 301.5 1.2e-81
CCDS55675.1 MDM4 gene_id:4194|Hs108|chr1 ( 164) 950 194.9 5.7e-50
CCDS8986.2 MDM2 gene_id:4193|Hs108|chr12 ( 497) 886 182.6 8.4e-46
CCDS73007.1 MDM4 gene_id:4194|Hs108|chr1 ( 116) 751 156.1 2e-38
CCDS60396.1 MDM4 gene_id:4194|Hs108|chr1 ( 140) 751 156.1 2.3e-38
CCDS61189.1 MDM2 gene_id:4193|Hs108|chr12 ( 321) 558 118.7 9.6e-27
>>CCDS1447.1 MDM4 gene_id:4194|Hs108|chr1 (490 aa)
initn: 3293 init1: 3293 opt: 3293 Z-score: 3468.4 bits: 651.2 E(32554): 7.2e-187
Smith-Waterman score: 3293; 100.0% identity (100.0% similar) in 490 aa overlap (1-490:1-490)
10 20 30 40 50 60
pF1KB5 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 MVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATATTDAAQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATATTDAAQTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALAQDHSMDIPSQDQLKQSAEESSTSRKRTTEDDIPTLPTSEHKCIHSREDEDLIENLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ALAQDHSMDIPSQDQLKQSAEESSTSRKRTTEDDIPTLPTSEHKCIHSREDEDLIENLAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DETSRLDLGFEEWDVAGLPWWFLGNLRSNYTPRSNGSTDLQTNQDVGTAIVSDTTDDLWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DETSRLDLGFEEWDVAGLPWWFLGNLRSNYTPRSNGSTDLQTNQDVGTAIVSDTTDDLWF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LNESVSEQLGVGIKVEAADTEQTSEEVGKVSDKKVIEVGKNDDLEDSKSLSDDTDVEVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LNESVSEQLGVGIKVEAADTEQTSEEVGKVSDKKVIEVGKNDDLEDSKSLSDDTDVEVTS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 EDEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSLSTSDITAIPEKENEGNDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EDEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSLSTSDITAIPEKENEGNDVP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 DCRRTISAPVVRPKDAYIKKENSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DCRRTISAPVVRPKDAYIKKENSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 RTDTENMEDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RTDTENMEDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKE
430 440 450 460 470 480
490
pF1KB5 IQLVIKVFIA
::::::::::
CCDS14 IQLVIKVFIA
490
>>CCDS73009.1 MDM4 gene_id:4194|Hs108|chr1 (392 aa)
initn: 2493 init1: 2493 opt: 2498 Z-score: 2633.4 bits: 496.4 E(32554): 2.3e-140
Smith-Waterman score: 2498; 96.9% identity (98.4% similar) in 382 aa overlap (112-490:11-392)
90 100 110 120 130
pF1KB5 GELLGRQSFSVKDPSPLYDMLRKNLVTLATATTDAAQTLA---LAQDHSMDIPSQDQLKQ
.:.:.: .. . :::::::::::::::
CCDS73 MTSFSTSAQCSTSDSACRISPGQINQDHSMDIPSQDQLKQ
10 20 30 40
140 150 160 170 180 190
pF1KB5 SAEESSTSRKRTTEDDIPTLPTSEHKCIHSREDEDLIENLAQDETSRLDLGFEEWDVAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SAEESSTSRKRTTEDDIPTLPTSEHKCIHSREDEDLIENLAQDETSRLDLGFEEWDVAGL
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB5 PWWFLGNLRSNYTPRSNGSTDLQTNQDVGTAIVSDTTDDLWFLNESVSEQLGVGIKVEAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PWWFLGNLRSNYTPRSNGSTDLQTNQDVGTAIVSDTTDDLWFLNESVSEQLGVGIKVEAA
110 120 130 140 150 160
260 270 280 290 300 310
pF1KB5 DTEQTSEEVGKVSDKKVIEVGKNDDLEDSKSLSDDTDVEVTSEDEWQCTECKKFNSPSKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DTEQTSEEVGKVSDKKVIEVGKNDDLEDSKSLSDDTDVEVTSEDEWQCTECKKFNSPSKR
170 180 190 200 210 220
320 330 340 350 360 370
pF1KB5 YCFRCWALRKDWYSDCSKLTHSLSTSDITAIPEKENEGNDVPDCRRTISAPVVRPKDAYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YCFRCWALRKDWYSDCSKLTHSLSTSDITAIPEKENEGNDVPDCRRTISAPVVRPKDAYI
230 240 250 260 270 280
380 390 400 410 420 430
pF1KB5 KKENSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQRTDTENMEDCQNLLKPCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KKENSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQRTDTENMEDCQNLLKPCS
290 300 310 320 330 340
440 450 460 470 480 490
pF1KB5 LCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA
350 360 370 380 390
>>CCDS73008.1 MDM4 gene_id:4194|Hs108|chr1 (267 aa)
initn: 1502 init1: 1502 opt: 1502 Z-score: 1588.1 bits: 302.4 E(32554): 3.9e-82
Smith-Waterman score: 1502; 99.5% identity (100.0% similar) in 218 aa overlap (273-490:50-267)
250 260 270 280 290 300
pF1KB5 ESVSEQLGVGIKVEAADTEQTSEEVGKVSDKKVIEVGKNDDLEDSKSLSDDTDVEVTSED
:.::::::::::::::::::::::::::::
CCDS73 SPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVIEVGKNDDLEDSKSLSDDTDVEVTSED
20 30 40 50 60 70
310 320 330 340 350 360
pF1KB5 EWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSLSTSDITAIPEKENEGNDVPDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSLSTSDITAIPEKENEGNDVPDC
80 90 100 110 120 130
370 380 390 400 410 420
pF1KB5 RRTISAPVVRPKDAYIKKENSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RRTISAPVVRPKDAYIKKENSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQRT
140 150 160 170 180 190
430 440 450 460 470 480
pF1KB5 DTENMEDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DTENMEDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ
200 210 220 230 240 250
490
pF1KB5 LVIKVFIA
::::::::
CCDS73 LVIKVFIA
260
>--
initn: 320 init1: 320 opt: 320 Z-score: 344.4 bits: 72.3 E(32554): 7.3e-13
Smith-Waterman score: 320; 100.0% identity (100.0% similar) in 49 aa overlap (1-49:1-49)
10 20 30 40 50 60
pF1KB5 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYI
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVIEVGKNDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 MVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATATTDAAQTL
CCDS73 LEDSKSLSDDTDVEVTSEDEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSLST
70 80 90 100 110 120
>>CCDS55674.1 MDM4 gene_id:4194|Hs108|chr1 (440 aa)
initn: 1497 init1: 1497 opt: 1497 Z-score: 1579.4 bits: 301.5 E(32554): 1.2e-81
Smith-Waterman score: 2874; 89.8% identity (89.8% similar) in 490 aa overlap (1-490:1-440)
10 20 30 40 50 60
pF1KB5 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 MVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATATTDAAQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATATTDAAQTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALAQDHSMDIPSQDQLKQSAEESSTSRKRTTEDDIPTLPTSEHKCIHSREDEDLIENLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ALAQDHSMDIPSQDQLKQSAEESSTSRKRTTEDDIPTLPTSEHKCIHSREDEDLIENLAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DETSRLDLGFEEWDVAGLPWWFLGNLRSNYTPRSNGSTDLQTNQDVGTAIVSDTTDDLWF
::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DETSRLDLGFEEWDVAGLPWWFLGNLRSNYTPRSNGSTDLQTNQ----------------
190 200 210 220
250 260 270 280 290 300
pF1KB5 LNESVSEQLGVGIKVEAADTEQTSEEVGKVSDKKVIEVGKNDDLEDSKSLSDDTDVEVTS
::::::::::::::::::::::::::
CCDS55 ----------------------------------VIEVGKNDDLEDSKSLSDDTDVEVTS
230 240 250
310 320 330 340 350 360
pF1KB5 EDEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSLSTSDITAIPEKENEGNDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EDEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSLSTSDITAIPEKENEGNDVP
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB5 DCRRTISAPVVRPKDAYIKKENSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DCRRTISAPVVRPKDAYIKKENSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQ
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB5 RTDTENMEDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RTDTENMEDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKE
380 390 400 410 420 430
490
pF1KB5 IQLVIKVFIA
::::::::::
CCDS55 IQLVIKVFIA
440
>>CCDS55675.1 MDM4 gene_id:4194|Hs108|chr1 (164 aa)
initn: 950 init1: 950 opt: 950 Z-score: 1010.6 bits: 194.9 E(32554): 5.7e-50
Smith-Waterman score: 950; 99.3% identity (100.0% similar) in 139 aa overlap (352-490:26-164)
330 340 350 360 370 380
pF1KB5 RCWALRKDWYSDCSKLTHSLSTSDITAIPEKENEGNDVPDCRRTISAPVVRPKDAYIKKE
.:::::::::::::::::::::::::::::
CCDS55 MTSFSTSAQCSTSDSACRISPGQINQENEGNDVPDCRRTISAPVVRPKDAYIKKE
10 20 30 40 50
390 400 410 420 430 440
pF1KB5 NSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQRTDTENMEDCQNLLKPCSLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDNLSEQRTDTENMEDCQNLLKPCSLCE
60 70 80 90 100 110
450 460 470 480 490
pF1KB5 KRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA
120 130 140 150 160
>>CCDS8986.2 MDM2 gene_id:4193|Hs108|chr12 (497 aa)
initn: 512 init1: 346 opt: 886 Z-score: 935.8 bits: 182.6 E(32554): 8.4e-46
Smith-Waterman score: 886; 33.9% identity (64.2% similar) in 481 aa overlap (23-488:30-495)
10 20 30 40 50
pF1KB5 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVM
: . :::: :::.:...::: . .:.:::.
CCDS89 MVRSRQMCNTNMSVPTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 HYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATA-
:::::::.:.:::...::.:::..::::.:.: :::::. .: :. .:::..
CCDS89 FYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 TTDAAQTLALAQDHSMDIPSQDQLKQSAEESSTSRKRTTEDDIPTLPTSEHKCIHSREDE
..:.. ... . : .: .: : .: . : .. . :. . .. ...:.
CCDS89 SSDSGTSVSENRCHLEGGSDQKDLVQELQEEKPSSSHLVSR--PSTSSRRRAISETEENS
130 140 150 160 170
180 190 200 210 220
pF1KB5 DLIENLAQDETSRLD---LGFEEWDVAGLPWWFLGNLRSNYTPRSNGS--TDLQTNQDVG
: . . : . . : :.:.: ..: : .: ::..: : .: :.
CCDS89 DELSGERQRKRHKSDSISLSFDE-SLA------LCVIREICCERSSSSESTGTPSNPDLD
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB5 TAIVSDTTDDLWFLNESVSEQLGVGIKVEAADTEQ--TSEEVGKVSDKKVIEVGKNDDLE
: ::. . : :. ..:::.:..: ..::. :.:. ::: ..::. :: . .
CCDS89 -AGVSEHSGD-WLDQDSVSDQFSVEFEVESLDSEDYSLSEEGQELSDEDD-EVYQVTVYQ
240 250 260 270 280
290 300 310 320 330 340
pF1KB5 DSKSLSD--DTDVEVTSEDEWQCTECKKFNSPSKRYCFRCWALRKDWYS-DCSKLTHSLS
..: .: . : :.. : :.:: :...: : .: ::::::..: : .: .:
CCDS89 AGESDTDSFEEDPEISLADYWKCTSCNEMNPPLPSHCNRCWALRENWLPEDKGKDKGEIS
290 300 310 320 330 340
350 360 370 380 390 400
pF1KB5 TSDITAIPEKENEGNDVPDCRRTISAPVVRPKDAYIKKENSKLFDPCNSVEFLDLAHSSE
. . .:: :::::..:: : ... ......:. . .: : : .. :
CCDS89 EKAKLENSTQAEEGFDVPDCKKTI---VNDSRESCVEENDDKITQASQSQESEDYSQPST
350 360 370 380 390 400
410 420 430 440 450
pF1KB5 SQETISSMGEQLDNLSEQRTDT--ENMEDCQ--NLLKPCSLCEKRPRDGNIIHGRTGHLV
:. : : :.. .. ...:. :..:. : ..:: .:. ::..: :.::.::::.
CCDS89 SSSIIYSSQEDVKEFEREETQDKEESVESSLPLNAIEPCVICQGRPKNGCIVHGKTGHLM
410 420 430 440 450 460
460 470 480 490
pF1KB5 TCFHCARRLKKAGASCPICKKEIQLVIKVFIA
.:: ::..::: . ::.:.. ::... ..
CCDS89 ACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP
470 480 490
>>CCDS73007.1 MDM4 gene_id:4194|Hs108|chr1 (116 aa)
initn: 751 init1: 751 opt: 751 Z-score: 803.5 bits: 156.1 E(32554): 2e-38
Smith-Waterman score: 751; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KB5 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 MVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATATTDAAQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATATTGD
70 80 90 100 110
130 140 150 160 170 180
pF1KB5 ALAQDHSMDIPSQDQLKQSAEESSTSRKRTTEDDIPTLPTSEHKCIHSREDEDLIENLAQ
>>CCDS60396.1 MDM4 gene_id:4194|Hs108|chr1 (140 aa)
initn: 751 init1: 751 opt: 751 Z-score: 802.3 bits: 156.1 E(32554): 2.3e-38
Smith-Waterman score: 751; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KB5 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MTSFSTSAQCSTSDSACRISPGQINQVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 MVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATATTDAAQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVTLATATTAKCRGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALAQDHSMDIPSQDQLKQSAEESSTSRKRTTEDDIPTLPTSEHKCIHSREDEDLIENLAQ
CCDS60 FHFQKKNYRRRYPHTAYLRA
130 140
>>CCDS61189.1 MDM2 gene_id:4193|Hs108|chr12 (321 aa)
initn: 484 init1: 247 opt: 558 Z-score: 593.6 bits: 118.7 E(32554): 9.6e-27
Smith-Waterman score: 558; 33.2% identity (64.3% similar) in 286 aa overlap (213-488:39-319)
190 200 210 220 230 240
pF1KB5 TSRLDLGFEEWDVAGLPWWFLGNLRSNYTPRSNGST-DLQTNQDVGTAIVSDTTDDLWFL
.: :. : : .. : ::. . : :.
CCDS61 PTDGAVTTSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEDLDAGVSEHSGD-WLD
10 20 30 40 50 60
250 260 270 280 290
pF1KB5 NESVSEQLGVGIKVEAADTEQ--TSEEVGKVSDKKVIEVGKNDDLEDSKSLSD--DTDVE
..:::.:..: ..::. :.:. ::: ..::. :: . . ..: .: . : :
CCDS61 QDSVSDQFSVEFEVESLDSEDYSLSEEGQELSDEDD-EVYQVTVYQAGESDTDSFEEDPE
70 80 90 100 110 120
300 310 320 330 340 350
pF1KB5 VTSEDEWQCTECKKFNSPSKRYCFRCWALRKDWYS-DCSKLTHSLSTSDITAIPEKENEG
.. : :.:: :...: : .: ::::::..: : .: .: . . .::
CCDS61 ISLADYWKCTSCNEMNPPLPSHCNRCWALRENWLPEDKGKDKGEISEKAKLENSTQAEEG
130 140 150 160 170 180
360 370 380 390 400 410
pF1KB5 NDVPDCRRTISAPVVRPKDAYIKKENSKLFDPCNSVEFLDLAHSSESQETISSMGEQLDN
:::::..:: : ... ......:. . .: : : .. : :. : : :.. .
CCDS61 FDVPDCKKTI---VNDSRESCVEENDDKITQASQSQESEDYSQPSTSSSIIYSSQEDVKE
190 200 210 220 230 240
420 430 440 450 460 470
pF1KB5 LSEQRTDT--ENMEDCQ--NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA
. ...:. :..:. : ..:: .:. ::..: :.::.::::..:: ::..::: .
CCDS61 FEREETQDKEESVESSLPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK
250 260 270 280 290 300
480 490
pF1KB5 SCPICKKEIQLVIKVFIA
::.:.. ::... ..
CCDS61 PCPVCRQPIQMIVLTYFP
310 320
490 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 18:52:29 2016 done: Mon Nov 7 18:52:30 2016
Total Scan time: 1.690 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]