FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5859, 460 aa
  1>>>pF1KB5859 460 - 460 aa - 460 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9521+/-0.00144; mu= 4.4908+/- 0.082
 mean_var=295.0307+/-67.540, 0's: 0 Z-trim(106.5): 634  B-trim: 0 in 0/51
 Lambda= 0.074669
 statistics sampled from 8269 (9041) to 8269 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.730

The best scores are:                                      opt bits E(32554)
CCDS8744.1 IRAK4 gene_id:51135|Hs108|chr12         ( 460) 3031 341.1 1.4e-93
CCDS44862.1 IRAK4 gene_id:51135|Hs108|chr12        ( 336) 2206 252.1 6.5e-67


>>CCDS8744.1 IRAK4 gene_id:51135|Hs108|chr12              (460 aa)
 initn: 3031 init1: 3031 opt: 3031  Z-score: 1793.6  bits: 341.1 E(32554): 1.4e-93
Smith-Waterman score: 3031; 100.0% identity (100.0% similar) in 460 aa overlap (1-460:1-460)

               10        20        30        40        50        60
pF1KB5 MNKPITPSTYVRCLNVGLIRKLSDFIDPQEGWKKLAVAIKKPSGDDRYNQFHIRRFEALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MNKPITPSTYVRCLNVGLIRKLSDFIDPQEGWKKLAVAIKKPSGDDRYNQFHIRRFEALL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QTGKSPTSELLFDWGTTNCTVGDLVDLLIQNEFFAPASLLLPDAVPKTANTLPSKEAITV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 QTGKSPTSELLFDWGTTNCTVGDLVDLLIQNEFFAPASLLLPDAVPKTANTLPSKEAITV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QQKQMPFCDKDRTLMTPVQNLEQSYMPPDSSSPENKSLEVSDTRFHSFSFYELKNVTNNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 QQKQMPFCDKDRTLMTPVQNLEQSYMPPDSSSPENKSLEVSDTRFHSFSFYELKNVTNNF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 DERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 QHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGIN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 FLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 RGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 RGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMND
              370       380       390       400       410       420

              430       440       450       460
pF1KB5 ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS
       ::::::::::::::::::::::::::::::::::::::::
CCDS87 ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS
              430       440       450       460

>>CCDS44862.1 IRAK4 gene_id:51135|Hs108|chr12             (336 aa)
 initn: 2206 init1: 2206 opt: 2206  Z-score: 1314.8  bits: 252.1 E(32554): 6.5e-67
Smith-Waterman score: 2206; 100.0% identity (100.0% similar) in 336 aa overlap (125-460:1-336)

          100       110       120       130       140       150    
pF1KB5 APASLLLPDAVPKTANTLPSKEAITVQQKQMPFCDKDRTLMTPVQNLEQSYMPPDSSSPE
                                     ::::::::::::::::::::::::::::::
CCDS44                               MPFCDKDRTLMTPVQNLEQSYMPPDSSSPE
                                             10        20        30

          160       170       180       190       200       210    
pF1KB5 NKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKK
               40        50        60        70        80        90

          220       230       240       250       260       270    
pF1KB5 LAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL
              100       110       120       130       140       150

          280       290       300       310       320       330    
pF1KB5 SCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR
              160       170       180       190       200       210

          340       350       360       370       380       390    
pF1KB5 ASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQ
              220       230       240       250       260       270

          400       410       420       430       440       450    
pF1KB5 LLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL
              280       290       300       310       320       330

          460
pF1KB5 QEMTAS
       ::::::
CCDS44 QEMTAS
             




460 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:33:19 2016 done: Mon Nov  7 01:33:19 2016
 Total Scan time:  2.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]