FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5844, 484 aa
  1>>>pF1KB5844 484 - 484 aa - 484 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4435+/-0.000782; mu= 10.1630+/- 0.048
 mean_var=147.5180+/-29.646, 0's: 0 Z-trim(113.6): 3  B-trim: 67 in 1/52
 Lambda= 0.105597
 statistics sampled from 14227 (14229) to 14227 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.437), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(32554)
CCDS7537.1 SUFU gene_id:51684|Hs108|chr10          ( 484) 3348 521.4 8.7e-148
CCDS53571.1 SUFU gene_id:51684|Hs108|chr10         ( 433) 3009 469.7 2.8e-132


>>CCDS7537.1 SUFU gene_id:51684|Hs108|chr10               (484 aa)
 initn: 3348 init1: 3348 opt: 3348  Z-score: 2766.7  bits: 521.4 E(32554): 8.7e-148
Smith-Waterman score: 3348; 100.0% identity (100.0% similar) in 484 aa overlap (1-484:1-484)

               10        20        30        40        50        60
pF1KB5 MAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 TFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCSGDHVSWHSPLDNSESRIQHMLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCSGDHVSWHSPLDNSESRIQHMLLT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GETIFEIDPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GETIFEIDPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAHDRAPSRKDSLESDSSTAIIPHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAHDRAPSRKDSLESDSSTAIIPHEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 IRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 EHPYAAHGPWLQILLTEEFVEKMLEDLEDLTSPEEFKLPKEYSWPEKKLKVSILPDVVFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EHPYAAHGPWLQILLTEEFVEKMLEDLEDLTSPEEFKLPKEYSWPEKKLKVSILPDVVFD
              430       440       450       460       470       480

           
pF1KB5 SPLH
       ::::
CCDS75 SPLH
           

>>CCDS53571.1 SUFU gene_id:51684|Hs108|chr10              (433 aa)
 initn: 3107 init1: 3009 opt: 3009  Z-score: 2488.3  bits: 469.7 E(32554): 2.8e-132
Smith-Waterman score: 3009; 99.8% identity (100.0% similar) in 433 aa overlap (1-433:1-433)

               10        20        30        40        50        60
pF1KB5 MAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 TFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCSGDHVSWHSPLDNSESRIQHMLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCSGDHVSWHSPLDNSESRIQHMLLT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GETIFEIDPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GETIFEIDPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAHDRAPSRKDSLESDSSTAIIPHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAHDRAPSRKDSLESDSSTAIIPHEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 IRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 EHPYAAHGPWLQILLTEEFVEKMLEDLEDLTSPEEFKLPKEYSWPEKKLKVSILPDVVFD
       ::::::::::::.                                               
CCDS53 EHPYAAHGPWLQL                                               
              430                                                  




484 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:33:54 2016 done: Mon Nov  7 01:33:55 2016
 Total Scan time:  3.520 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]