Result of FASTA (ccds) for
pFN21AB5820
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5820, 531 aa
1>>>pF1KB5820 531 - 531 aa - 531 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7821+/-0.00106; mu= -3.1370+/- 0.064
mean_var=420.8938+/-86.228, 0's: 0 Z-trim(115.5): 20 B-trim: 170 in 1/53
Lambda= 0.062516
statistics sampled from 16036 (16049) to 16036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.493), width: 16
Scan time: 4.020
The best scores are: opt bits E(32554)
CCDS45756.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 531) 3639 342.3 8.1e-94
CCDS82188.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 483) 3119 295.4 9.9e-80
CCDS82187.1 SMARCD2 gene_id:6603|Hs108|chr17 ( 456) 3084 292.2 8.5e-79
CCDS8797.2 SMARCD1 gene_id:6602|Hs108|chr12 ( 515) 2164 209.3 8.8e-54
CCDS5924.1 SMARCD3 gene_id:6604|Hs108|chr7 ( 470) 1855 181.4 2e-45
CCDS34780.1 SMARCD3 gene_id:6604|Hs108|chr7 ( 483) 1842 180.2 4.7e-45
CCDS8798.2 SMARCD1 gene_id:6602|Hs108|chr12 ( 474) 1688 166.3 7e-41
>>CCDS45756.1 SMARCD2 gene_id:6603|Hs108|chr17 (531 aa)
initn: 3639 init1: 3639 opt: 3639 Z-score: 1797.8 bits: 342.3 E(32554): 8.1e-94
Smith-Waterman score: 3639; 100.0% identity (100.0% similar) in 531 aa overlap (1-531:1-531)
10 20 30 40 50 60
pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK
430 440 450 460 470 480
490 500 510 520 530
pF1KB5 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
490 500 510 520 530
>>CCDS82188.1 SMARCD2 gene_id:6603|Hs108|chr17 (483 aa)
initn: 3119 init1: 3119 opt: 3119 Z-score: 1544.9 bits: 295.4 E(32554): 9.9e-80
Smith-Waterman score: 3119; 99.6% identity (99.8% similar) in 463 aa overlap (69-531:21-483)
40 50 60 70 80 90
pF1KB5 GPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFG
:. :::::::::::::::::::::::::::
CCDS82 MGRRVGVEVTPRWAPQKCQGARPQRPGMSPGNRMPMAGLQVGPPAGSPFG
10 20 30 40 50
100 110 120 130 140 150
pF1KB5 AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQA
60 70 80 90 100 110
160 170 180 190 200 210
pF1KB5 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTP
120 130 140 150 160 170
220 230 240 250 260 270
pF1KB5 GGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMP
180 190 200 210 220 230
280 290 300 310 320 330
pF1KB5 TTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLY
240 250 260 270 280 290
340 350 360 370 380 390
pF1KB5 IKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPN
300 310 320 330 340 350
400 410 420 430 440 450
pF1KB5 DQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFML
360 370 380 390 400 410
460 470 480 490 500 510
pF1KB5 SFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQR
420 430 440 450 460 470
520 530
pF1KB5 RQELEQVLGIRLT
:::::::::::::
CCDS82 RQELEQVLGIRLT
480
>>CCDS82187.1 SMARCD2 gene_id:6603|Hs108|chr17 (456 aa)
initn: 3084 init1: 3084 opt: 3084 Z-score: 1528.1 bits: 292.2 E(32554): 8.5e-79
Smith-Waterman score: 3084; 100.0% identity (100.0% similar) in 456 aa overlap (76-531:1-456)
50 60 70 80 90 100
pF1KB5 GPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRP
::::::::::::::::::::::::::::::
CCDS82 MSPGNRMPMAGLQVGPPAGSPFGAAAPLRP
10 20 30
110 120 130 140 150 160
pF1KB5 GMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAF
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB5 ERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGD
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB5 KVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDG
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB5 FQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQ
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB5 DGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTAC
280 290 300 310 320 330
410 420 430 440 450 460
pF1KB5 YDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQ
340 350 360 370 380 390
470 480 490 500 510 520
pF1KB5 DFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQV
400 410 420 430 440 450
530
pF1KB5 LGIRLT
::::::
CCDS82 LGIRLT
>>CCDS8797.2 SMARCD1 gene_id:6602|Hs108|chr12 (515 aa)
initn: 2222 init1: 1539 opt: 2164 Z-score: 1079.0 bits: 209.3 E(32554): 8.8e-54
Smith-Waterman score: 2208; 63.8% identity (80.0% similar) in 544 aa overlap (1-531:1-515)
10 20 30 40 50 60
pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
:..: .:: ..:.::: :.. .. ::: ::: .: ::: :: . .:
CCDS87 MAAR--AGFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR
10 20 30 40 50
70 80 90 100 110
pF1KB5 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRL
:: :.: : :::: ::.:: : ..:::. .:. .:::. . :: :::
CCDS87 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP
60 70 80 90 100
120 130 140 150 160 170
pF1KB5 LVPQAQP--PMPAQRRG--LKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR
: : . .: :. :..:::::.::::::::::::::::::::::::::::: :
CCDS87 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB5 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV
::..::::.:.:. :::::::.:::::.:.:... :. :: ::::::::
CCDS87 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV
170 180 190 200 210
240 250 260 270 280
pF1KB5 EGKLLDDP-------SKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ
::.::.: .:::::::::::::::::::.::::::::::::: :::::::::
CCDS87 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB5 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG
::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..:::
CCDS87 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB5 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD
::::.. :..:..::: :..:::::..: .::. :.::.:::::::::::::::::::
CCDS87 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB5 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF
::::::: ::.::..:: ::..:::::.:: :::::::.::::::::.:::::. ::: :
CCDS87 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGF
400 410 420 430 440 450
470 480 490 500 510 520
pF1KB5 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG
:..::.:: :::: .:::.::::::::: :: :::::::: :....:::::::::::.::
CCDS87 INDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG
460 470 480 490 500 510
530
pF1KB5 IRLT
:: :
CCDS87 IRNT
>>CCDS5924.1 SMARCD3 gene_id:6604|Hs108|chr7 (470 aa)
initn: 2197 init1: 1676 opt: 1855 Z-score: 928.9 bits: 181.4 E(32554): 2e-45
Smith-Waterman score: 2259; 70.4% identity (84.6% similar) in 480 aa overlap (63-531:4-470)
40 50 60 70 80 90
pF1KB5 GPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPP
: : . ::::: : ::: : .:::
CCDS59 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPP
10 20 30
100 110 120 130 140
pF1KB5 AGSPFGAAAPLRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMAD
:::. .. .:::. :. :.: ::: : ::: : ::. :. :::::::
CCDS59 -GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB5 KVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTF
:.::::::::::::::::::::::::::::: :::..::::.:.:. ::::::.::::::
CCDS59 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB5 SPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD
.:.: .. :: :. .::::::::::::::::::::::::::::::::::
CCDS59 NPAKPDAEDSDGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELD
160 170 180 190 200
270 280 290 300 310 320
pF1KB5 KELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLL
:.::::::::::::: :::::::::::::::::.:.::::::::.::::.::::::::::
CCDS59 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLL
210 220 230 240 250 260
330 340 350 360 370 380
pF1KB5 GVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLL
:.:::.:.::.:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..::
CCDS59 GLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALL
270 280 290 300 310 320
390 400 410 420 430 440
pF1KB5 QHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIH
::::::::::::::.::::::::::::::..:::.:::.:: ::.:::::..:: :::
CCDS59 LPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIH
330 340 350 360 370 380
450 460 470 480 490 500
pF1KB5 ETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQP
:::::::::: ::::::::: ::. ..:. :::: ::::..::: ::::::::: :::::
CCDS59 ETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQP
390 400 410 420 430 440
510 520 530
pF1KB5 WAQEAVGRHIFAKVQQRRQELEQVLGIRLT
:.::::.:... :.::::::::: : .: :
CCDS59 WSQEAVSRYFYCKIQQRRQELEQSLVVRNT
450 460 470
>>CCDS34780.1 SMARCD3 gene_id:6604|Hs108|chr7 (483 aa)
initn: 2191 init1: 1676 opt: 1842 Z-score: 922.4 bits: 180.2 E(32554): 4.7e-45
Smith-Waterman score: 2246; 71.3% identity (85.5% similar) in 470 aa overlap (73-531:27-483)
50 60 70 80 90 100
pF1KB5 RGPGPAGGVGGPGAAAFRPMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAP
:::: : ::: : .::: :::. ..
CCDS34 MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPP-GSPYMGSPA
10 20 30 40 50
110 120 130 140 150
pF1KB5 LRPGMPPTMMDPFRKRLLVP----QAQ------PPMPAQRRGLKRRKMADKVLPQRIREL
.:::. :. :.: ::: : ::: : ::. :. ::::::::.::::::::
CCDS34 VRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIREL
60 70 80 90 100 110
160 170 180 190 200 210
pF1KB5 VPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DS
::::::::::::::::::::: :::..::::.:.:. ::::::.::::::.:.: .. ::
CCDS34 VPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDS
120 130 140 150 160 170
220 230 240 250 260 270
pF1KB5 AGTAGTPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHL
:. .:::::::::::::::::::::::::::::::::::.::::::::
CCDS34 DGS------------IASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHL
180 190 200 210 220
280 290 300 310 320 330
pF1KB5 VEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAI
::::: :::::::::::::::::.:.::::::::.::::.:::::::::::.:::.:.::
CCDS34 VEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAI
230 240 250 260 270 280
340 350 360 370 380 390
pF1KB5 MQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINH
.:::: :.: :.:::.:..:::: ..::.:::.: ::.:::::..:..:: ::::::::
CCDS34 VQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINH
290 300 310 320 330 340
400 410 420 430 440 450
pF1KB5 VISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLK
::::::.::::::::::::::..:::.:::.:: ::.:::::..:: :::::::::::::
CCDS34 VISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLK
350 360 370 380 390 400
460 470 480 490 500 510
pF1KB5 TQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHI
::::::::: ::. ..:. :::: ::::..::: ::::::::: ::::::.::::.:..
CCDS34 IQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYF
410 420 430 440 450 460
520 530
pF1KB5 FAKVQQRRQELEQVLGIRLT
. :.::::::::: : .: :
CCDS34 YCKIQQRRQELEQSLVVRNT
470 480
>>CCDS8798.2 SMARCD1 gene_id:6602|Hs108|chr12 (474 aa)
initn: 1990 init1: 1056 opt: 1688 Z-score: 847.4 bits: 166.3 E(32554): 7e-41
Smith-Waterman score: 1899; 57.9% identity (73.0% similar) in 544 aa overlap (1-531:1-474)
10 20 30 40 50 60
pF1KB5 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
:..: .:: ..:.::: :.. .. ::: ::: .: ::: :: . .:
CCDS87 MAAR--AGFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR
10 20 30 40 50
70 80 90 100 110
pF1KB5 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRL
:: :.: : :::: ::.:: : ..:::. .:. .:::. . :: :::
CCDS87 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP
60 70 80 90 100
120 130 140 150 160 170
pF1KB5 LVPQAQP--PMPAQRRG--LKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR
: : . .: :. :..:::::.::::::::::::::::::::::::::::: :
CCDS87 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB5 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV
::..::::.:.:. :::::::.:::::.:.:... :. :: ::::::::
CCDS87 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV
170 180 190 200 210
240 250 260 270 280
pF1KB5 EGKLLDDP-------SKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ
::.::.: .:::::::::::::::::::.::::::::::::: :::::::::
CCDS87 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB5 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG
::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..:::
CCDS87 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB5 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD
::::.. :..:..::: :..:::::..: .::. :.::.:::::::::::::::::::
CCDS87 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB5 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF
::::::: ::.::..:: ::..:::::.:: :
CCDS87 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKT---------------------------
400 410 420
470 480 490 500 510 520
pF1KB5 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG
.:::.::::::::: :: :::::::: :....:::::::::::.::
CCDS87 --------------MTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG
430 440 450 460 470
530
pF1KB5 IRLT
:: :
CCDS87 IRNT
531 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 10:37:56 2016 done: Sun Nov 6 10:37:56 2016
Total Scan time: 4.020 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]