Result of FASTA (omim) for
pFN21AB5810
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5810, 448 aa
1>>>pF1KB5810 448 - 448 aa - 448 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0216+/-0.000294; mu= 10.8256+/- 0.019
mean_var=106.2736+/-21.367, 0's: 0 Z-trim(120.4): 413 B-trim: 49 in 1/52
Lambda= 0.124412
statistics sampled from 35095 (35518) to 35095 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.416), width: 16
Scan time: 10.460
The best scores are: opt bits E(85289)
NP_000956 (OMIM: 180220,615524) retinoic acid rece ( 448) 3017 551.6 1.5e-156
NP_001277145 (OMIM: 180220,615524) retinoic acid r ( 455) 2651 485.9 9.3e-137
NP_001277195 (OMIM: 180220,615524) retinoic acid r ( 399) 2650 485.7 9.4e-137
NP_001277229 (OMIM: 180220,615524) retinoic acid r ( 405) 2650 485.7 9.5e-137
NP_001036193 (OMIM: 180190) retinoic acid receptor ( 443) 2276 418.6 1.7e-116
NP_001019980 (OMIM: 180240,612376) retinoic acid r ( 457) 2276 418.6 1.7e-116
XP_005257609 (OMIM: 180240,612376) PREDICTED: reti ( 478) 2231 410.5 4.8e-114
XP_011523397 (OMIM: 180240,612376) PREDICTED: reti ( 462) 2227 409.8 7.7e-114
NP_000955 (OMIM: 180240,612376) retinoic acid rece ( 462) 2227 409.8 7.7e-114
XP_005257611 (OMIM: 180240,612376) PREDICTED: reti ( 462) 2227 409.8 7.7e-114
XP_005257610 (OMIM: 180240,612376) PREDICTED: reti ( 462) 2227 409.8 7.7e-114
NP_001138773 (OMIM: 180240,612376) retinoic acid r ( 462) 2227 409.8 7.7e-114
XP_011523398 (OMIM: 180240,612376) PREDICTED: reti ( 404) 2225 409.4 8.7e-114
NP_057236 (OMIM: 180220,615524) retinoic acid rece ( 336) 2222 408.8 1.1e-113
NP_001277146 (OMIM: 180220,615524) retinoic acid r ( 336) 2222 408.8 1.1e-113
NP_001277205 (OMIM: 180220,615524) retinoic acid r ( 336) 2222 408.8 1.1e-113
NP_000957 (OMIM: 180190) retinoic acid receptor ga ( 454) 2199 404.8 2.5e-112
NP_001230659 (OMIM: 180190) retinoic acid receptor ( 382) 2116 389.8 6.5e-108
NP_001230661 (OMIM: 180190) retinoic acid receptor ( 432) 1858 343.6 6.3e-94
XP_016880409 (OMIM: 180240,612376) PREDICTED: reti ( 343) 1828 338.1 2.1e-92
NP_001277206 (OMIM: 180220,615524) retinoic acid r ( 402) 1806 334.2 3.8e-91
NP_001230660 (OMIM: 180190) retinoic acid receptor ( 333) 1777 329.0 1.2e-89
NP_001138774 (OMIM: 180240,612376) retinoic acid r ( 365) 1557 289.5 9.9e-78
NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 719 139.1 1.9e-32
NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 719 139.1 2.2e-32
NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 719 139.1 2.3e-32
XP_005246679 (OMIM: 168600,601828) PREDICTED: nucl ( 535) 714 138.3 4.9e-32
XP_016859708 (OMIM: 168600,601828) PREDICTED: nucl ( 598) 714 138.3 5.4e-32
NP_006177 (OMIM: 168600,601828) nuclear receptor s ( 598) 714 138.3 5.4e-32
XP_005246678 (OMIM: 168600,601828) PREDICTED: nucl ( 609) 714 138.3 5.5e-32
NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 712 137.9 6.3e-32
XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 695 134.8 4.2e-31
XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 695 134.8 4.4e-31
NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 695 134.9 5.2e-31
NP_775180 (OMIM: 139139) nuclear receptor subfamil ( 598) 693 134.5 7.4e-31
XP_006719427 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 693 134.5 7.4e-31
NP_002126 (OMIM: 139139) nuclear receptor subfamil ( 598) 693 134.5 7.4e-31
XP_005268881 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 693 134.5 7.4e-31
XP_006719426 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 693 134.5 7.4e-31
XP_016874736 (OMIM: 139139) PREDICTED: nuclear rec ( 602) 693 134.5 7.4e-31
NP_001189162 (OMIM: 139139) nuclear receptor subfa ( 611) 693 134.5 7.5e-31
NP_001189163 (OMIM: 139139) nuclear receptor subfa ( 652) 693 134.5 7.9e-31
XP_005268879 (OMIM: 139139) PREDICTED: nuclear rec ( 670) 693 134.5 8.1e-31
NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 673 130.8 5.5e-30
XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 673 130.9 6.5e-30
XP_016870651 (OMIM: 600542,612237) PREDICTED: nucl ( 626) 663 129.1 3.2e-29
NP_008912 (OMIM: 600542,612237) nuclear receptor s ( 626) 663 129.1 3.2e-29
NP_775292 (OMIM: 600542,612237) nuclear receptor s ( 637) 663 129.1 3.2e-29
NP_001127757 (OMIM: 602969) estrogen-related recep ( 435) 626 122.4 2.3e-27
XP_016856130 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 626 122.4 2.3e-27
>>NP_000956 (OMIM: 180220,615524) retinoic acid receptor (448 aa)
initn: 3017 init1: 3017 opt: 3017 Z-score: 2931.3 bits: 551.6 E(85289): 1.5e-156
Smith-Waterman score: 3017; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KB5 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS
370 380 390 400 410 420
430 440
pF1KB5 SGNTAEHSPSISPSSVENSGVSQSPLVQ
::::::::::::::::::::::::::::
NP_000 SGNTAEHSPSISPSSVENSGVSQSPLVQ
430 440
>>NP_001277145 (OMIM: 180220,615524) retinoic acid recep (455 aa)
initn: 2651 init1: 2651 opt: 2651 Z-score: 2576.2 bits: 485.9 E(85289): 9.3e-137
Smith-Waterman score: 2651; 99.7% identity (100.0% similar) in 396 aa overlap (53-448:60-455)
30 40 50 60 70 80
pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF
.:::::::::::::::::::::::::::::
NP_001 PPVIGGLSLPPLHGLHGHPPPSGCSTPSPATIETQSTSSEELVPSPPSPLPPPRVYKPCF
30 40 50 60 70 80
90 100 110 120 130 140
pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
330 340 350 360 370 380
390 400 410 420 430 440
pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS
390 400 410 420 430 440
pF1KB5 QSPLVQ
::::::
NP_001 QSPLVQ
450
>>NP_001277195 (OMIM: 180220,615524) retinoic acid recep (399 aa)
initn: 2650 init1: 2650 opt: 2650 Z-score: 2576.1 bits: 485.7 E(85289): 9.4e-137
Smith-Waterman score: 2650; 99.7% identity (100.0% similar) in 396 aa overlap (53-448:4-399)
30 40 50 60 70 80
pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF
.:::::::::::::::::::::::::::::
NP_001 MENAIETQSTSSEELVPSPPSPLPPPRVYKPCF
10 20 30
90 100 110 120 130 140
pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS
340 350 360 370 380 390
pF1KB5 QSPLVQ
::::::
NP_001 QSPLVQ
>>NP_001277229 (OMIM: 180220,615524) retinoic acid recep (405 aa)
initn: 2650 init1: 2650 opt: 2650 Z-score: 2576.0 bits: 485.7 E(85289): 9.5e-137
Smith-Waterman score: 2650; 99.7% identity (100.0% similar) in 396 aa overlap (53-448:10-405)
30 40 50 60 70 80
pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF
.:::::::::::::::::::::::::::::
NP_001 MKLSRIAFPAIETQSTSSEELVPSPPSPLPPPRVYKPCF
10 20 30
90 100 110 120 130 140
pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVS
340 350 360 370 380 390
pF1KB5 QSPLVQ
::::::
NP_001 QSPLVQ
400
>>NP_001036193 (OMIM: 180190) retinoic acid receptor gam (443 aa)
initn: 2277 init1: 2240 opt: 2276 Z-score: 2212.6 bits: 418.6 E(85289): 1.7e-116
Smith-Waterman score: 2276; 74.4% identity (89.7% similar) in 445 aa overlap (1-445:1-442)
10 20 30 40 50 60
pF1KB5 MFDCMDVLSVSPGQILDFYTASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTS
:.:::.... .: .. . .:.:.. .:.. . .::.:: . : . . ::.::::::
NP_001 MYDCMETFAPGPRRL--YGAAGPGAGLLRRATGGSCFAGLESFAWPQPASLQSVETQSTS
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRD
:::.::: ::: ::::::::::::.:::::::::::.::::::::::::::::.::::::
NP_001 SEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 KNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDL
:::.:::::::::::::::::::::::::.:::::::::::.... .:::.. .:..:
NP_001 KNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYELSPQLEEL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 TEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLP
:. ::::::::::::::::::::::::::.::::::::::::::::::::::::::::
NP_001 ITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLP
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 GFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD
:::::.::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_001 GFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 LVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRR
:::.::.:::::::::::::::::::::::::.::::: :::::::::::::..: :.::
NP_001 LVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRR
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 PSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSS
::.:.:::..::::::::.::.:::::.::::::::: :::::.::::: : : . .
NP_001 PSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEMFEDDSSQP
360 370 380 390 400 410
430 440
pF1KB5 SGNTAEHSPSISPSSVENSGVSQSPLVQ
. . : . :.. ...: .::
NP_001 GPHPNASSEDEVPGG-QGKGGLKSPA
420 430 440
>>NP_001019980 (OMIM: 180240,612376) retinoic acid recep (457 aa)
initn: 2277 init1: 2225 opt: 2276 Z-score: 2212.4 bits: 418.6 E(85289): 1.7e-116
Smith-Waterman score: 2302; 75.7% identity (88.0% similar) in 460 aa overlap (1-445:1-457)
10 20 30 40 50
pF1KB5 MFDCMDVLSVSPGQIL--DFYTASPSSCMLQEKALKAC--FSGLTQTE-WQHRHTAQSIE
:.. ..: . .:. .: :::. . .:.: ::.: : .: .: :. . .:::
NP_001 MYESVEVGGPTPNPFLVVDFYNQN-RACLLPEKGLPAPGPYSTPLRTPLWN--GSNHSIE
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 TQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIY
:::.::::.::::::: : ::.::::::::::::::::::::::::::::::::::::.:
NP_001 TQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 TCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTA
::::::::.:::::::::::::::::::::::::::::::::::::. : ::.::: .:
NP_001 TCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 ELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEF
:. .: ::.:::::::::.::::::::::.:...:: ::. ::::::::.:::::: :::
NP_001 EVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEF
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 AKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF
::.::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIY
::::::::.::::::::::::.:::::::::::::::::::.: .:: ::::::::::.:
NP_001 GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVY
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB5 IRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEP
.::::::.::::::.:::::::::::::::::::::::::::::::::::::::::: .
NP_001 VRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLDT
360 370 380 390 400 410
420 430 440
pF1KB5 LT--PSSSGNTA--------EHSPSISPSSVENSGVSQSPLVQ
:. :...: . :::.:::: ..: ...::
NP_001 LSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP
420 430 440 450
>>XP_005257609 (OMIM: 180240,612376) PREDICTED: retinoic (478 aa)
initn: 2301 init1: 2218 opt: 2231 Z-score: 2168.5 bits: 410.5 E(85289): 4.8e-114
Smith-Waterman score: 2257; 81.8% identity (92.1% similar) in 406 aa overlap (50-445:73-478)
20 30 40 50 60 70
pF1KB5 TASPSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYK
:...:::::.::::.::::::: : ::.::
XP_005 SPRLRGRWPGSAGQGAGGRAPRAGWRAGDVTGSAIETQSSSSEEIVPSPPSPPPLPRIYK
50 60 70 80 90 100
80 90 100 110 120 130
pF1KB5 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQ
::::::::::::::::::::::::::::::::::.:::::::::.:::::::::::::::
XP_005 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQ
110 120 130 140 150 160
140 150 160 170 180 190
pF1KB5 KCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG
::::::::::::::::::::::. : ::.::: .: :. .: ::.:::::::::.:::::
XP_005 KCFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLG
170 180 190 200 210 220
200 210 220 230 240 250
pF1KB5 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL
:::::.:...:: ::. ::::::::.:::::: :::::.::::: :::::::::::::::
XP_005 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL
230 240 250 260 270 280
260 270 280 290 300 310
pF1KB5 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTET
::::::::::::::::::::::::::::::::::::::::::::.::::::::::::.::
XP_005 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAET
290 300 310 320 330 340
320 330 340 350 360 370
pF1KB5 GLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRS
:::::::::::::::::.: .:: ::::::::::.:.::::::.::::::.:::::::::
XP_005 GLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS
350 360 370 380 390 400
380 390 400 410 420
pF1KB5 ISAKGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLT--PSSSGNTA--------EHSP
::::::::::::::::::::::::::::::::: . :. :...: . ::
XP_005 ISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSP
410 420 430 440 450 460
430 440
pF1KB5 SISPSSVENSGVSQSPLVQ
:.:::: ..: ...::
XP_005 SLSPSSNRSSPATHSP
470
>>XP_011523397 (OMIM: 180240,612376) PREDICTED: retinoic (462 aa)
initn: 2301 init1: 2218 opt: 2227 Z-score: 2164.8 bits: 409.8 E(85289): 7.7e-114
Smith-Waterman score: 2253; 82.1% identity (92.1% similar) in 403 aa overlap (53-445:60-462)
30 40 50 60 70 80
pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF
.:::::.::::.::::::: : ::.:::::
XP_011 PMLGGLSPPGALTTLQHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF
30 40 50 60 70 80
90 100 110 120 130 140
pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
:::::::::::::::::::::::::::::::.:::::::::.::::::::::::::::::
XP_011 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
:::::::::::::::::::. : ::.::: .: :. .: ::.:::::::::.::::::::
XP_011 EVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYT
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
::.:...:: ::. ::::::::.:::::: :::::.::::: ::::::::::::::::::
XP_011 TNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
:::::::::::::::::::::::::::::::::::::::::.::::::::::::.:::::
XP_011 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
::::::::::::::.: .:: ::::::::::.:.::::::.::::::.::::::::::::
XP_011 SAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISA
330 340 350 360 370 380
390 400 410 420 430
pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLT--PSSSGNTA--------EHSPSIS
:::::::::::::::::::::::::::::: . :. :...: . :::.:
XP_011 KGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLS
390 400 410 420 430 440
440
pF1KB5 PSSVENSGVSQSPLVQ
::: ..: ...::
XP_011 PSSNRSSPATHSP
450 460
>>NP_000955 (OMIM: 180240,612376) retinoic acid receptor (462 aa)
initn: 2301 init1: 2218 opt: 2227 Z-score: 2164.8 bits: 409.8 E(85289): 7.7e-114
Smith-Waterman score: 2253; 82.1% identity (92.1% similar) in 403 aa overlap (53-445:60-462)
30 40 50 60 70 80
pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF
.:::::.::::.::::::: : ::.:::::
NP_000 PMLGGLSPPGALTTLQHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF
30 40 50 60 70 80
90 100 110 120 130 140
pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
:::::::::::::::::::::::::::::::.:::::::::.::::::::::::::::::
NP_000 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
:::::::::::::::::::. : ::.::: .: :. .: ::.:::::::::.::::::::
NP_000 EVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYT
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
::.:...:: ::. ::::::::.:::::: :::::.::::: ::::::::::::::::::
NP_000 TNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
:::::::::::::::::::::::::::::::::::::::::.::::::::::::.:::::
NP_000 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
::::::::::::::.: .:: ::::::::::.:.::::::.::::::.::::::::::::
NP_000 SAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISA
330 340 350 360 370 380
390 400 410 420 430
pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLT--PSSSGNTA--------EHSPSIS
:::::::::::::::::::::::::::::: . :. :...: . :::.:
NP_000 KGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLS
390 400 410 420 430 440
440
pF1KB5 PSSVENSGVSQSPLVQ
::: ..: ...::
NP_000 PSSNRSSPATHSP
450 460
>>XP_005257611 (OMIM: 180240,612376) PREDICTED: retinoic (462 aa)
initn: 2301 init1: 2218 opt: 2227 Z-score: 2164.8 bits: 409.8 E(85289): 7.7e-114
Smith-Waterman score: 2253; 82.1% identity (92.1% similar) in 403 aa overlap (53-445:60-462)
30 40 50 60 70 80
pF1KB5 PSSCMLQEKALKACFSGLTQTEWQHRHTAQSIETQSTSSEELVPSPPSPLPPPRVYKPCF
.:::::.::::.::::::: : ::.:::::
XP_005 PMLGGLSPPGALTTLQHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF
30 40 50 60 70 80
90 100 110 120 130 140
pF1KB5 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCF
:::::::::::::::::::::::::::::::.:::::::::.::::::::::::::::::
XP_005 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB5 EVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYT
:::::::::::::::::::. : ::.::: .: :. .: ::.:::::::::.::::::::
XP_005 EVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYT
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB5 TNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL
::.:...:: ::. ::::::::.:::::: :::::.::::: ::::::::::::::::::
XP_005 TNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB5 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
:::::::::::::::::::::::::::::::::::::::::.::::::::::::.:::::
XP_005 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB5 SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISA
::::::::::::::.: .:: ::::::::::.:.::::::.::::::.::::::::::::
XP_005 SAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISA
330 340 350 360 370 380
390 400 410 420 430
pF1KB5 KGAERVITLKMEIPGSMPPLIQEMLENSEGHEPLT--PSSSGNTA--------EHSPSIS
:::::::::::::::::::::::::::::: . :. :...: . :::.:
XP_005 KGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLS
390 400 410 420 430 440
440
pF1KB5 PSSVENSGVSQSPLVQ
::: ..: ...::
XP_005 PSSNRSSPATHSP
450 460
448 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:53:48 2016 done: Sun Nov 6 17:53:50 2016
Total Scan time: 10.460 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]