Result of FASTA (omim) for
pFN21AB5803
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5803, 450 aa
1>>>pF1KB5803 450 - 450 aa - 450 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8866+/-0.000363; mu= 16.5959+/- 0.023
mean_var=113.8210+/-24.750, 0's: 0 Z-trim(115.4): 30 B-trim: 1154 in 1/55
Lambda= 0.120216
statistics sampled from 25829 (25853) to 25829 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.303), width: 16
Scan time: 8.210
The best scores are: opt bits E(85289)
NP_068834 (OMIM: 605465) zinc finger protein 277 [ ( 450) 3080 545.2 1.3e-154
XP_011514070 (OMIM: 605465) PREDICTED: zinc finger ( 372) 2542 451.9 1.4e-126
XP_016867209 (OMIM: 605465) PREDICTED: zinc finger ( 332) 2216 395.3 1.3e-109
XP_005250186 (OMIM: 605465) PREDICTED: zinc finger ( 332) 2216 395.3 1.3e-109
>>NP_068834 (OMIM: 605465) zinc finger protein 277 [Homo (450 aa)
initn: 3080 init1: 3080 opt: 3080 Z-score: 2897.0 bits: 545.2 E(85289): 1.3e-154
Smith-Waterman score: 3080; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)
10 20 30 40 50 60
pF1KB5 MAASKTQGAVARMQEDRDGSCSTVGGVGYGDSKDCILEPLSLPESPGGTTTLEGSPSVPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MAASKTQGAVARMQEDRDGSCSTVGGVGYGDSKDCILEPLSLPESPGGTTTLEGSPSVPC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IFCEEHFPVAEQDKLLKHMIIEHKIVIADVKLVADFQRYILYWRKRFTEQPITDFCSVIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 IFCEEHFPVAEQDKLLKHMIIEHKIVIADVKLVADFQRYILYWRKRFTEQPITDFCSVIR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 INSTAPFEEQENYFLLCDVLPEDRILREELQKQRLREILEQQQQERNDTNFHGVCMFCNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 INSTAPFEEQENYFLLCDVLPEDRILREELQKQRLREILEQQQQERNDTNFHGVCMFCNE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 EFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQCLYCEKTFRDKNTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 EFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQCLYCEKTFRDKNTLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQEDDWSDWEEHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 DHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQEDDWSDWEEHPA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 SAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVNFIRRQVHQCRCY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 SAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVNFIRRQVHQCRCY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 GCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYYFPTYENDTLLCTLSDSESDLTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 GCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYYFPTYENDTLLCTLSDSESDLTAQ
370 380 390 400 410 420
430 440 450
pF1KB5 EQNENVPIISEDTSKLYALKQSSILNQLLL
::::::::::::::::::::::::::::::
NP_068 EQNENVPIISEDTSKLYALKQSSILNQLLL
430 440 450
>>XP_011514070 (OMIM: 605465) PREDICTED: zinc finger pro (372 aa)
initn: 2542 init1: 2542 opt: 2542 Z-score: 2393.8 bits: 451.9 E(85289): 1.4e-126
Smith-Waterman score: 2542; 100.0% identity (100.0% similar) in 372 aa overlap (79-450:1-372)
50 60 70 80 90 100
pF1KB5 TTTLEGSPSVPCIFCEEHFPVAEQDKLLKHMIIEHKIVIADVKLVADFQRYILYWRKRFT
::::::::::::::::::::::::::::::
XP_011 MIIEHKIVIADVKLVADFQRYILYWRKRFT
10 20 30
110 120 130 140 150 160
pF1KB5 EQPITDFCSVIRINSTAPFEEQENYFLLCDVLPEDRILREELQKQRLREILEQQQQERND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQPITDFCSVIRINSTAPFEEQENYFLLCDVLPEDRILREELQKQRLREILEQQQQERND
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB5 TNFHGVCMFCNEEFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQCLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TNFHGVCMFCNEEFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQCLY
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB5 CEKTFRDKNTLKDHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CEKTFRDKNTLKDHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQ
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB5 EDDWSDWEEHPASAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDDWSDWEEHPASAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKLVN
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB5 FIRRQVHQCRCYGCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYYFPTYENDTLLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FIRRQVHQCRCYGCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYYFPTYENDTLLC
280 290 300 310 320 330
410 420 430 440 450
pF1KB5 TLSDSESDLTAQEQNENVPIISEDTSKLYALKQSSILNQLLL
::::::::::::::::::::::::::::::::::::::::::
XP_011 TLSDSESDLTAQEQNENVPIISEDTSKLYALKQSSILNQLLL
340 350 360 370
>>XP_016867209 (OMIM: 605465) PREDICTED: zinc finger pro (332 aa)
initn: 2216 init1: 2216 opt: 2216 Z-score: 2088.8 bits: 395.3 E(85289): 1.3e-109
Smith-Waterman score: 2216; 100.0% identity (100.0% similar) in 323 aa overlap (128-450:10-332)
100 110 120 130 140 150
pF1KB5 RYILYWRKRFTEQPITDFCSVIRINSTAPFEEQENYFLLCDVLPEDRILREELQKQRLRE
::::::::::::::::::::::::::::::
XP_016 MSSWLLISKEEQENYFLLCDVLPEDRILREELQKQRLRE
10 20 30
160 170 180 190 200 210
pF1KB5 ILEQQQQERNDTNFHGVCMFCNEEFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILEQQQQERNDTNFHGVCMFCNEEFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTL
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB5 QKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQ
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB5 LEDDRELLDHQEDDWSDWEEHPASAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEDDRELLDHQEDDWSDWEEHPASAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELG
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB5 LNFYQQVKLVNFIRRQVHQCRCYGCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNFYQQVKLVNFIRRQVHQCRCYGCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYY
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB5 FPTYENDTLLCTLSDSESDLTAQEQNENVPIISEDTSKLYALKQSSILNQLLL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FPTYENDTLLCTLSDSESDLTAQEQNENVPIISEDTSKLYALKQSSILNQLLL
280 290 300 310 320 330
>>XP_005250186 (OMIM: 605465) PREDICTED: zinc finger pro (332 aa)
initn: 2216 init1: 2216 opt: 2216 Z-score: 2088.8 bits: 395.3 E(85289): 1.3e-109
Smith-Waterman score: 2216; 100.0% identity (100.0% similar) in 323 aa overlap (128-450:10-332)
100 110 120 130 140 150
pF1KB5 RYILYWRKRFTEQPITDFCSVIRINSTAPFEEQENYFLLCDVLPEDRILREELQKQRLRE
::::::::::::::::::::::::::::::
XP_005 MSSWLLISKEEQENYFLLCDVLPEDRILREELQKQRLRE
10 20 30
160 170 180 190 200 210
pF1KB5 ILEQQQQERNDTNFHGVCMFCNEEFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILEQQQQERNDTNFHGVCMFCNEEFLGNRSVILNHMAREHAFNIGLPDNIVNCNEFLCTL
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB5 QKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRKINPKNREYDRFYVINYLELGKSWEEVQ
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB5 LEDDRELLDHQEDDWSDWEEHPASAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEDDRELLDHQEDDWSDWEEHPASAVCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELG
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB5 LNFYQQVKLVNFIRRQVHQCRCYGCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNFYQQVKLVNFIRRQVHQCRCYGCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYY
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB5 FPTYENDTLLCTLSDSESDLTAQEQNENVPIISEDTSKLYALKQSSILNQLLL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FPTYENDTLLCTLSDSESDLTAQEQNENVPIISEDTSKLYALKQSSILNQLLL
280 290 300 310 320 330
450 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 18:06:14 2016 done: Mon Nov 7 18:06:15 2016
Total Scan time: 8.210 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]