Result of FASTA (ccds) for
pFN21AB5788
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5788, 352 aa
1>>>pF1KB5788 352 - 352 aa - 352 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.4525+/-0.00106; mu= -13.4011+/- 0.064
mean_var=417.7706+/-83.423, 0's: 0 Z-trim(115.9): 12 B-trim: 0 in 0/54
Lambda= 0.062749
statistics sampled from 16466 (16478) to 16466 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.506), width: 16
Scan time: 3.420
The best scores are: opt bits E(32554)
CCDS11502.1 MAPT gene_id:4137|Hs108|chr17 ( 352) 2340 225.2 6.6e-59
CCDS56033.1 MAPT gene_id:4137|Hs108|chr17 ( 410) 2039 198.0 1.2e-50
CCDS11500.1 MAPT gene_id:4137|Hs108|chr17 ( 383) 1722 169.3 4.9e-42
CCDS11499.1 MAPT gene_id:4137|Hs108|chr17 ( 441) 1421 142.0 8.8e-34
CCDS45716.1 MAPT gene_id:4137|Hs108|chr17 ( 412) 1415 141.5 1.2e-33
CCDS11501.1 MAPT gene_id:4137|Hs108|chr17 ( 758) 1183 120.7 4.1e-27
CCDS45715.1 MAPT gene_id:4137|Hs108|chr17 ( 776) 1066 110.1 6.4e-24
CCDS2385.1 MAP2 gene_id:4133|Hs108|chr2 ( 471) 930 97.6 2.2e-20
CCDS2384.1 MAP2 gene_id:4133|Hs108|chr2 (1827) 930 98.0 6.4e-20
CCDS33369.1 MAP2 gene_id:4133|Hs108|chr2 ( 559) 793 85.3 1.4e-16
>>CCDS11502.1 MAPT gene_id:4137|Hs108|chr17 (352 aa)
initn: 2340 init1: 2340 opt: 2340 Z-score: 1171.0 bits: 225.2 E(32554): 6.6e-59
Smith-Waterman score: 2340; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)
10 20 30 40 50 60
pF1KB5 MAEPRQEFEVMEDHAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKAEEAGIGDTPSLEDEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEPRQEFEVMEDHAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKAEEAGIGDTPSLEDEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPGQKGQANATRIPAKTPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPGQKGQANATRIPAKTPPA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 PKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 AKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQIVYKPVDLSKVTSKCGSLGNIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQIVYKPVDLSKVTSKCGSLGNIH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 HKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAKTDHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAKTDHG
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 AEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQGL
310 320 330 340 350
>>CCDS56033.1 MAPT gene_id:4137|Hs108|chr17 (410 aa)
initn: 2038 init1: 2038 opt: 2039 Z-score: 1022.8 bits: 198.0 E(32554): 1.2e-50
Smith-Waterman score: 2039; 94.5% identity (95.8% similar) in 330 aa overlap (25-352:81-410)
10 20 30 40 50
pF1KB5 MAEPRQEFEVMEDHAGTYGLGDRKDQG--GYTMHQDQEGDTDAGLKAEEAGIGD
:.: : . . . : ::::::::
CCDS56 PTEDGSEEPGSETSDAKSTPTAEDVTAPLVDEGAPGKQAAAQPHTEIPEGTTAEEAGIGD
60 70 80 90 100 110
60 70 80 90 100 110
pF1KB5 TPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPGQKGQANATR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPGQKGQANATR
120 130 140 150 160 170
120 130 140 150 160 170
pF1KB5 IPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVR
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB5 TPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQIVYKPVDLSKVTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQIVYKPVDLSKVTSK
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB5 CGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFREN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFREN
300 310 320 330 340 350
300 310 320 330 340 350
pF1KB5 AKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQGL
360 370 380 390 400 410
>>CCDS11500.1 MAPT gene_id:4137|Hs108|chr17 (383 aa)
initn: 1720 init1: 1614 opt: 1722 Z-score: 868.1 bits: 169.3 E(32554): 4.9e-42
Smith-Waterman score: 2268; 91.9% identity (91.9% similar) in 383 aa overlap (1-352:1-383)
10 20 30 40 50 60
pF1KB5 MAEPRQEFEVMEDHAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKAEEAGIGDTPSLEDEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEPRQEFEVMEDHAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKAEEAGIGDTPSLEDEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPGQKGQANATRIPAKTPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPGQKGQANATRIPAKTPPA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 PKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSS
130 140 150 160 170 180
190 200 210
pF1KB5 AKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQI---------------------
:::::::::::::::::::::::::::::::::::::::
CCDS11 AKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQIINKKLDLSNVQSKCGSKDNIK
190 200 210 220 230 240
220 230 240 250 260
pF1KB5 ----------VYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLD
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HVPGGGSVQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLD
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB5 NITHVPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NITHVPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSID
310 320 330 340 350 360
330 340 350
pF1KB5 MVDSPQLATLADEVSASLAKQGL
:::::::::::::::::::::::
CCDS11 MVDSPQLATLADEVSASLAKQGL
370 380
>>CCDS11499.1 MAPT gene_id:4137|Hs108|chr17 (441 aa)
initn: 1418 init1: 1312 opt: 1421 Z-score: 720.0 bits: 142.0 E(32554): 8.8e-34
Smith-Waterman score: 1967; 86.4% identity (87.5% similar) in 361 aa overlap (25-352:81-441)
10 20 30 40 50
pF1KB5 MAEPRQEFEVMEDHAGTYGLGDRKDQG--GYTMHQDQEGDTDAGLKAEEAGIGD
:.: : . . . : ::::::::
CCDS11 PTEDGSEEPGSETSDAKSTPTAEDVTAPLVDEGAPGKQAAAQPHTEIPEGTTAEEAGIGD
60 70 80 90 100 110
60 70 80 90 100 110
pF1KB5 TPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPGQKGQANATR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPGQKGQANATR
120 130 140 150 160 170
120 130 140 150 160 170
pF1KB5 IPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVR
180 190 200 210 220 230
180 190 200 210
pF1KB5 TPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQI-------------
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQIINKKLDLSNVQSK
240 250 260 270 280 290
220 230 240 250 260
pF1KB5 ------------------VYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRV
::::::::::::::::::::::::::::::::::::::::::
CCDS11 CGSKDNIKHVPGGGSVQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRV
300 310 320 330 340 350
270 280 290 300 310 320
pF1KB5 QSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPVVSGDTSPRHLSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPVVSGDTSPRHLSN
360 370 380 390 400 410
330 340 350
pF1KB5 VSSTGSIDMVDSPQLATLADEVSASLAKQGL
:::::::::::::::::::::::::::::::
CCDS11 VSSTGSIDMVDSPQLATLADEVSASLAKQGL
420 430 440
>>CCDS45716.1 MAPT gene_id:4137|Hs108|chr17 (412 aa)
initn: 1413 init1: 1307 opt: 1415 Z-score: 717.5 bits: 141.5 E(32554): 1.2e-33
Smith-Waterman score: 2200; 85.4% identity (85.4% similar) in 412 aa overlap (1-352:1-412)
10 20 30 40
pF1KB5 MAEPRQEFEVMEDHAGTYGLGDRKDQGGYTMHQDQEGDTDAGLK----------------
::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAEPRQEFEVMEDHAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKESPLQTPTEDGSEEPG
10 20 30 40 50 60
50 60 70 80 90
pF1KB5 -------------AEEAGIGDTPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGADGKT
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SETSDAKSTPTAEAEEAGIGDTPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGADGKT
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 KIATPRGAAPPGQKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KIATPRGAAPPGQKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSR
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 SRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQ
190 200 210 220 230 240
220 230 240
pF1KB5 PGGGKVQI-------------------------------VYKPVDLSKVTSKCGSLGNIH
:::::::: :::::::::::::::::::::
CCDS45 PGGGKVQIINKKLDLSNVQSKCGSKDNIKHVPGGGSVQIVYKPVDLSKVTSKCGSLGNIH
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB5 HKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAKTDHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAKTDHG
310 320 330 340 350 360
310 320 330 340 350
pF1KB5 AEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQGL
370 380 390 400 410
>>CCDS11501.1 MAPT gene_id:4137|Hs108|chr17 (758 aa)
initn: 1470 init1: 1070 opt: 1183 Z-score: 600.3 bits: 120.7 E(32554): 4.1e-27
Smith-Waterman score: 1729; 82.5% identity (85.8% similar) in 331 aa overlap (53-352:428-758)
30 40 50 60 70 80
pF1KB5 RKDQGGYTMHQDQEGDTDAGLKAEEAGIGDTPSLEDEAAGHVTQARMVSKSKDGTGSDDK
.:.. : . . :.. ..:. .
CCDS11 RSSAKTLKNRPCLSPKHPTPGSSDPLIQPSSPAVCPEPPSSPKYVSSVTSRTGSSGAKEM
400 410 420 430 440 450
90 100 110 120 130 140
pF1KB5 KAKGADGKTKIATPRGAAPPGQKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSP
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KLKGADGKTKIATPRGAAPPGQKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSP
460 470 480 490 500 510
150 160 170 180 190 200
pF1KB5 GSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKI
520 530 540 550 560 570
210 220 230
pF1KB5 GSTENLKHQPGGGKVQI-------------------------------VYKPVDLSKVTS
::::::::::::::::: ::::::::::::
CCDS11 GSTENLKHQPGGGKVQIINKKLDLSNVQSKCGSKDNIKHVPGGGSVQIVYKPVDLSKVTS
580 590 600 610 620 630
240 250 260 270 280 290
pF1KB5 KCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRE
640 650 660 670 680 690
300 310 320 330 340 350
pF1KB5 NAKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NAKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQG
700 710 720 730 740 750
pF1KB5 L
:
CCDS11 L
>>CCDS45715.1 MAPT gene_id:4137|Hs108|chr17 (776 aa)
initn: 1573 init1: 981 opt: 1066 Z-score: 542.9 bits: 110.1 E(32554): 6.4e-24
Smith-Waterman score: 1683; 78.2% identity (81.4% similar) in 349 aa overlap (53-352:428-776)
30 40 50 60 70 80
pF1KB5 RKDQGGYTMHQDQEGDTDAGLKAEEAGIGDTPSLEDEAAGHVTQARMVSKSKDGTGSDDK
.:.. : . . :.. ..:. .
CCDS45 RSSAKTLKNRPCLSPKHPTPGSSDPLIQPSSPAVCPEPPSSPKYVSSVTSRTGSSGAKEM
400 410 420 430 440 450
90 100 110 120
pF1KB5 KAKGADGKTKIATPRGAAPPGQKGQANATRIPAKTPPAPKTPPSS---------------
: :::::::::::::::::::::::::::::::::::::::::::
CCDS45 KLKGADGKTKIATPRGAAPPGQKGQANATRIPAKTPPAPKTPPSSATKQVQRRPPPAGPR
460 470 480 490 500 510
130 140 150 160 170 180
pF1KB5 ---GEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SERGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSR
520 530 540 550 560 570
190 200 210
pF1KB5 LQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQI-------------------------
:::::::::::::::::::::::::::::::::::
CCDS45 LQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQIINKKLDLSNVQSKCGSKDNIKHVPG
580 590 600 610 620 630
220 230 240 250 260 270
pF1KB5 ------VYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITH
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GGSVQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSLDNITH
640 650 660 670 680 690
280 290 300 310 320 330
pF1KB5 VPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDS
700 710 720 730 740 750
340 350
pF1KB5 PQLATLADEVSASLAKQGL
:::::::::::::::::::
CCDS45 PQLATLADEVSASLAKQGL
760 770
>>CCDS2385.1 MAP2 gene_id:4133|Hs108|chr2 (471 aa)
initn: 837 init1: 760 opt: 930 Z-score: 479.4 bits: 97.6 E(32554): 2.2e-20
Smith-Waterman score: 937; 46.4% identity (69.2% similar) in 373 aa overlap (23-352:107-471)
10 20 30 40 50
pF1KB5 MAEPRQEFEVMEDHAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKAEE-AGIG
. .: ..:.:: . : ::: :..
CCDS23 GELTSADRETAEEVSARIVQVVTAEAVAVLKGEQEKEAQHKDQTAALP--LAAEETANLP
80 90 100 110 120 130
60 70 80 90 100
pF1KB5 DTP----------SLEDEAAGHVTQARMVSK-SKDGTGSDDKKAKGADGKTKIATPRGAA
.: ..:. :.:. . : : : .:: .. : .:. . .... : .
CCDS23 PSPPPSPASEQTVTVEEAAGGESALAPSVFKQAKDKVS--DGVTKSPEKRSSLPRPSSIL
140 150 160 170 180 190
110 120 130
pF1KB5 PP--GQKGQ------------ANATRIPAKTPP----------APKTPPSSGEPPKSGDR
:: : .:. ....: ... : .: :: :.. : :
CCDS23 PPRRGVSGDRDENSFSLNSSISSSARRTTRSEPIRRAGKSGTSTPTTPGSTAITP--GTP
200 210 220 230 240 250
140 150 160 170 180
pF1KB5 SGYSS--PGSPGTPGSRSRTPSLPTPPTRE---P--KKVAVVRTPPKSPSSAKSRLQTAP
.::: ::.:::: : ::: : : : ::::..:::::::.. : .:.
CCDS23 PSYSSRTPGTPGTP-SYPRTPHTPGTPKSAILVPSEKKVAIIRTPPKSPATPK-QLRLIN
260 270 280 290 300
190 200 210 220 230 240
pF1KB5 VPMPDLKNVKSKIGSTENLKHQPGGGKVQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVE
:.:::::::::::::.:.:.:: ::.:::: : .:::.:::::::: ::.:.::::.:.
CCDS23 QPLPDLKNVKSKIGSTDNIKYQPKGGQVQIVTKKIDLSHVTSKCGSLKNIRHRPGGGRVK
310 320 330 340 350 360
250 260 270 280 290 300
pF1KB5 VKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPV
..: :::::...:.:.::::: ::::::: ::...::.:::.:::..::::::. .::
CCDS23 IESVKLDFKEKAQAKVGSLDNAHHVPGGGNVKIDSQKLNFREHAKARVDHGAEIITQSPG
370 380 390 400 410 420
310 320 330 340 350
pF1KB5 VSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQGL
:. .:::.::::::.:::....::::::::..:.:.::::::
CCDS23 RSSVASPRRLSNVSSSGSINLLESPQLATLAEDVTAALAKQGL
430 440 450 460 470
>>CCDS2384.1 MAP2 gene_id:4133|Hs108|chr2 (1827 aa)
initn: 837 init1: 760 opt: 930 Z-score: 471.1 bits: 98.0 E(32554): 6.4e-20
Smith-Waterman score: 930; 48.6% identity (74.4% similar) in 317 aa overlap (43-352:1520-1827)
20 30 40 50 60 70
pF1KB5 DHAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKAEEAGIGDTPSLEDEAAGHVTQARMVSK
.: . ..: . : . . . .
CCDS23 AIKYTRPTHLSCVKRKTTAAGGESALAPSVFKQAKDKVSDGVTKSPEKRSSLPRPSSILP
1490 1500 1510 1520 1530 1540
80 90 100 110 120 130
pF1KB5 SKDGTGSD-DKKAKGADGKTKIATPRGA-APPGQKGQANATRIPAKTPPAPKTPPSSGEP
. :...: :... . ... . .. : . . : ... ..: :. :: . : : :
CCDS23 PRRGVSGDRDENSFSLNSSISSSARRTTRSEPIRRAGKSGTSTPT-TPGSTAITP--GTP
1550 1560 1570 1580 1590 1600
140 150 160 170 180
pF1KB5 PKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTRE---P--KKVAVVRTPPKSPSSAKSRL
:. ..:. ::.:::: : ::: : : : ::::..:::::::.. : .:
CCDS23 PSYSSRT----PGTPGTP-SYPRTPHTPGTPKSAILVPSEKKVAIIRTPPKSPATPK-QL
1610 1620 1630 1640 1650 1660
190 200 210 220 230 240
pF1KB5 QTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQIVYKPVDLSKVTSKCGSLGNIHHKPGG
. :.:::::::::::::.:.:.:: ::.:::: : .:::.:::::::: ::.:.:::
CCDS23 RLINQPLPDLKNVKSKIGSTDNIKYQPKGGQVQIVTKKIDLSHVTSKCGSLKNIRHRPGG
1670 1680 1690 1700 1710 1720
250 260 270 280 290 300
pF1KB5 GQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAKTDHGAEIVY
:.:...: :::::...:.:.::::: ::::::: ::...::.:::.:::..::::::.
CCDS23 GRVKIESVKLDFKEKAQAKVGSLDNAHHVPGGGNVKIDSQKLNFREHAKARVDHGAEIIT
1730 1740 1750 1760 1770 1780
310 320 330 340 350
pF1KB5 KSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQGL
.:: :. .:::.::::::.:::....::::::::..:.:.::::::
CCDS23 QSPGRSSVASPRRLSNVSSSGSINLLESPQLATLAEDVTAALAKQGL
1790 1800 1810 1820
>>CCDS33369.1 MAP2 gene_id:4133|Hs108|chr2 (559 aa)
initn: 834 init1: 698 opt: 793 Z-score: 411.3 bits: 85.3 E(32554): 1.4e-16
Smith-Waterman score: 873; 44.9% identity (67.8% similar) in 354 aa overlap (37-352:216-559)
10 20 30 40 50 60
pF1KB5 EFEVMEDHAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKAEEAGIGDTPSLEDEAAGHVTQ
:.:: : ..: : . : . . .
CCDS33 TKSPRYSSACPSTTKRATFSDSLLIQPTSAGSTDR-LPYSKSGNKDGVTKSPEKRSSLPR
190 200 210 220 230 240
70 80 90 100 110 120
pF1KB5 ARMVSKSKDGTGSD-DKKAKGADGKTKIATPRGA-APPGQKGQANATRIPAKTPPAPKTP
. . :...: :... . ... . .. : . . : ... ..: :. :: .
CCDS33 PSSILPPRRGVSGDRDENSFSLNSSISSSARRTTRSEPIRRAGKSGTSTPT-TPGSTAIT
250 260 270 280 290 300
130 140 150 160 170
pF1KB5 PSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTRE---P--KKVAVVRTPPKSPS
: : ::. ..:. ::.:::: : ::: : : : ::::..:::::::.
CCDS33 P--GTPPSYSSRT----PGTPGTP-SYPRTPHTPGTPKSAILVPSEKKVAIIRTPPKSPA
310 320 330 340 350
180 190 200 210
pF1KB5 SAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQP---------------------------
. : .:. :.:::::::::::::.:.:.::
CCDS33 TPK-QLRLINQPLPDLKNVKSKIGSTDNIKYQPKGGQVRILNKKIDFSKVQSRCGSKDNI
360 370 380 390 400 410
220 230 240 250 260
pF1KB5 ----GGGKVQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLDFKDRVQSKIGSL
:::.:::: : .:::.:::::::: ::.:.::::.:...: :::::...:.:.:::
CCDS33 KHSAGGGNVQIVTKKIDLSHVTSKCGSLKNIRHRPGGGRVKIESVKLDFKEKAQAKVGSL
420 430 440 450 460 470
270 280 290 300 310 320
pF1KB5 DNITHVPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSI
:: ::::::: ::...::.:::.:::..::::::. .:: :. .:::.::::::.:::
CCDS33 DNAHHVPGGGNVKIDSQKLNFREHAKARVDHGAEIITQSPGRSSVASPRRLSNVSSSGSI
480 490 500 510 520 530
330 340 350
pF1KB5 DMVDSPQLATLADEVSASLAKQGL
....::::::::..:.:.::::::
CCDS33 NLLESPQLATLAEDVTAALAKQGL
540 550
352 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 15:34:21 2016 done: Mon Nov 7 15:34:22 2016
Total Scan time: 3.420 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]