Result of FASTA (ccds) for
pFN21AB5739
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5739, 789 aa
1>>>pF1KB5739 789 - 789 aa - 789 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8941+/-0.00112; mu= 17.1204+/- 0.067
mean_var=69.8861+/-14.203, 0's: 0 Z-trim(102.5): 31 B-trim: 0 in 0/50
Lambda= 0.153419
statistics sampled from 6965 (6969) to 6965 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.563), E-opt: 0.2 (0.214), width: 16
Scan time: 3.520
The best scores are: opt bits E(32554)
CCDS46591.1 TRPC4AP gene_id:26133|Hs108|chr20 ( 789) 5141 1147.7 0
CCDS13246.1 TRPC4AP gene_id:26133|Hs108|chr20 ( 797) 5115 1142.0 0
>>CCDS46591.1 TRPC4AP gene_id:26133|Hs108|chr20 (789 aa)
initn: 5141 init1: 5141 opt: 5141 Z-score: 6144.2 bits: 1147.7 E(32554): 0
Smith-Waterman score: 5141; 100.0% identity (100.0% similar) in 789 aa overlap (1-789:1-789)
10 20 30 40 50 60
pF1KB5 MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FLTERDKQSKWSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FLTERDKQSKWSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 TKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVER
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 LCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQGASEENGLPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQGASEENGLPH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 TSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 WRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 WRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAIS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 LKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 YADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 KFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 LFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNN
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 FHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIEEPYM
730 740 750 760 770 780
pF1KB5 DIDRDFTEE
:::::::::
CCDS46 DIDRDFTEE
>>CCDS13246.1 TRPC4AP gene_id:26133|Hs108|chr20 (797 aa)
initn: 2890 init1: 2890 opt: 5115 Z-score: 6113.0 bits: 1142.0 E(32554): 0
Smith-Waterman score: 5115; 99.0% identity (99.0% similar) in 797 aa overlap (1-789:1-797)
10 20 30 40 50 60
pF1KB5 MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FLTERDKQSKWSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FLTERDKQSKWSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 TKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVER
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 LCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQ--------GA
:::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS13 LCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQASIVFPPPGA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB5 SEENGLPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SEENGLPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGL
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB5 NNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQE
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB5 LNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVE
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB5 SFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRF
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB5 NKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYIS
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB5 QVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKK
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB5 YPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALV
730 740 750 760 770 780
780
pF1KB5 SYIEEPYMDIDRDFTEE
:::::::::::::::::
CCDS13 SYIEEPYMDIDRDFTEE
790
789 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:05:49 2016 done: Sun Nov 6 21:05:49 2016
Total Scan time: 3.520 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]