Result of FASTA (omim) for
pFN21AB5592
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5592, 494 aa
1>>>pF1KB5592 494 - 494 aa - 494 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7614+/-0.000512; mu= 12.9270+/- 0.031
mean_var=237.4320+/-48.003, 0's: 0 Z-trim(117.4): 417 B-trim: 98 in 2/50
Lambda= 0.083235
statistics sampled from 28771 (29276) to 28771 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.343), width: 16
Scan time: 8.310
The best scores are: opt bits E(85289)
NP_004782 (OMIM: 604234) integrin beta-like protei ( 494) 3968 490.2 5.8e-138
XP_005254157 (OMIM: 604234) PREDICTED: integrin be ( 494) 3968 490.2 5.8e-138
NP_001258685 (OMIM: 604234) integrin beta-like pro ( 401) 3178 395.2 1.9e-109
NP_001258683 (OMIM: 604234) integrin beta-like pro ( 353) 2877 358.9 1.3e-98
NP_001258684 (OMIM: 604234) integrin beta-like pro ( 445) 2854 356.3 1e-97
XP_016878163 (OMIM: 612454) PREDICTED: multiple ep ( 854) 538 78.6 7.7e-14
XP_016878164 (OMIM: 612454) PREDICTED: multiple ep ( 854) 538 78.6 7.7e-14
XP_006724064 (OMIM: 116920,600065) PREDICTED: inte ( 700) 499 73.8 1.8e-12
NP_001290167 (OMIM: 116920,600065) integrin beta-2 ( 700) 499 73.8 1.8e-12
XP_016883830 (OMIM: 116920,600065) PREDICTED: inte ( 700) 499 73.8 1.8e-12
NP_000202 (OMIM: 116920,600065) integrin beta-2 is ( 769) 499 73.9 1.9e-12
NP_001120963 (OMIM: 116920,600065) integrin beta-2 ( 769) 499 73.9 1.9e-12
NP_001005731 (OMIM: 131800,147557,226650,226730) i (1752) 492 73.6 5.3e-12
NP_001308052 (OMIM: 131800,147557,226650,226730) i (1752) 492 73.6 5.3e-12
XP_006721933 (OMIM: 131800,147557,226650,226730) P (1787) 492 73.6 5.4e-12
NP_001005619 (OMIM: 131800,147557,226650,226730) i (1805) 492 73.6 5.4e-12
XP_011523053 (OMIM: 131800,147557,226650,226730) P (1807) 492 73.6 5.4e-12
NP_000204 (OMIM: 131800,147557,226650,226730) inte (1822) 492 73.6 5.4e-12
XP_006721931 (OMIM: 131800,147557,226650,226730) P (1840) 492 73.6 5.4e-12
XP_006721930 (OMIM: 131800,147557,226650,226730) P (1857) 492 73.6 5.5e-12
XP_005257366 (OMIM: 131800,147557,226650,226730) P (1875) 492 73.6 5.5e-12
XP_005257368 (OMIM: 131800,147557,226650,226730) P (1875) 492 73.6 5.5e-12
XP_006721929 (OMIM: 131800,147557,226650,226730) P (1910) 492 73.6 5.6e-12
XP_011539190 (OMIM: 604266) PREDICTED: multiple ep (1364) 489 73.0 5.9e-12
XP_011539189 (OMIM: 604266) PREDICTED: multiple ep (1395) 489 73.1 6e-12
XP_006710469 (OMIM: 604266) PREDICTED: multiple ep (1436) 489 73.1 6.1e-12
NP_001400 (OMIM: 604266) multiple epidermal growth (1541) 489 73.1 6.3e-12
XP_016856022 (OMIM: 604266) PREDICTED: multiple ep (1559) 489 73.1 6.4e-12
XP_011539188 (OMIM: 604266) PREDICTED: multiple ep (1560) 489 73.1 6.4e-12
XP_011539187 (OMIM: 604266) PREDICTED: multiple ep (1603) 489 73.1 6.5e-12
NP_002202 (OMIM: 135630) integrin beta-1 isoform 1 ( 798) 481 71.7 8.5e-12
NP_596867 (OMIM: 135630) integrin beta-1 isoform 1 ( 798) 481 71.7 8.5e-12
NP_391988 (OMIM: 135630) integrin beta-1 isoform 1 ( 801) 481 71.7 8.5e-12
NP_001243474 (OMIM: 612453,614399) multiple epider (1140) 456 69.0 8.3e-11
NP_115822 (OMIM: 612453,614399) multiple epidermal (1140) 456 69.0 8.3e-11
XP_011541996 (OMIM: 612453,614399) PREDICTED: mult (1140) 456 69.0 8.3e-11
XP_016865476 (OMIM: 612453,614399) PREDICTED: mult (1195) 456 69.0 8.5e-11
XP_016865477 (OMIM: 612453,614399) PREDICTED: mult ( 760) 446 67.5 1.5e-10
NP_000203 (OMIM: 173470,187800,273800,608446) inte ( 788) 431 65.7 5.4e-10
NP_001269319 (OMIM: 147558,616221) integrin beta-6 ( 650) 428 65.3 6.2e-10
NP_001269283 (OMIM: 147558,616221) integrin beta-6 ( 693) 428 65.3 6.5e-10
NP_001269318 (OMIM: 147558,616221) integrin beta-6 ( 715) 428 65.3 6.6e-10
NP_001269317 (OMIM: 147558,616221) integrin beta-6 ( 746) 428 65.3 6.7e-10
NP_000879 (OMIM: 147558,616221) integrin beta-6 is ( 788) 428 65.4 6.9e-10
NP_001269282 (OMIM: 147558,616221) integrin beta-6 ( 788) 428 65.4 6.9e-10
XP_016861844 (OMIM: 147561) PREDICTED: integrin be ( 661) 412 63.3 2.4e-09
XP_016861843 (OMIM: 147561) PREDICTED: integrin be ( 683) 412 63.4 2.4e-09
XP_016861842 (OMIM: 147561) PREDICTED: integrin be ( 691) 412 63.4 2.4e-09
XP_016861841 (OMIM: 147561) PREDICTED: integrin be ( 691) 412 63.4 2.4e-09
XP_016861840 (OMIM: 147561) PREDICTED: integrin be ( 691) 412 63.4 2.4e-09
>>NP_004782 (OMIM: 604234) integrin beta-like protein 1 (494 aa)
initn: 3968 init1: 3968 opt: 3968 Z-score: 2597.9 bits: 490.2 E(85289): 5.8e-138
Smith-Waterman score: 3968; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)
10 20 30 40 50 60
pF1KB5 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW
430 440 450 460 470 480
490
pF1KB5 NGNACEIWLGSEYP
::::::::::::::
NP_004 NGNACEIWLGSEYP
490
>>XP_005254157 (OMIM: 604234) PREDICTED: integrin beta-l (494 aa)
initn: 3968 init1: 3968 opt: 3968 Z-score: 2597.9 bits: 490.2 E(85289): 5.8e-138
Smith-Waterman score: 3968; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)
10 20 30 40 50 60
pF1KB5 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW
430 440 450 460 470 480
490
pF1KB5 NGNACEIWLGSEYP
::::::::::::::
XP_005 NGNACEIWLGSEYP
490
>>NP_001258685 (OMIM: 604234) integrin beta-like protein (401 aa)
initn: 3174 init1: 3174 opt: 3178 Z-score: 2086.1 bits: 395.2 E(85289): 1.9e-109
Smith-Waterman score: 3178; 99.0% identity (99.2% similar) in 394 aa overlap (101-494:8-401)
80 90 100 110 120 130
pF1KB5 CGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQGWYGDACQYPT
:. :::::::::::::::::::::::::
NP_001 MNLVAVMGAFNKGHGKCDCGKCKCDQGWYGDACQYPT
10 20 30
140 150 160 170 180 190
pF1KB5 NCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCECDDRECIDDET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCECDDRECIDDET
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB5 EEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICSNRGTCVCGEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICSNRGTCVCGEC
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB5 TCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKAGWYGKKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKAGWYGKKC
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 EHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKTCECDDRRCED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKTCECDDRRCED
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB5 LDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADGILCSGKGSCH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADGILCSGKGSCH
280 290 300 310 320 330
440 450 460 470 480 490
pF1KB5 CGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLG
340 350 360 370 380 390
pF1KB5 SEYP
::::
NP_001 SEYP
400
>>NP_001258683 (OMIM: 604234) integrin beta-like protein (353 aa)
initn: 2877 init1: 2877 opt: 2877 Z-score: 1891.3 bits: 358.9 E(85289): 1.3e-98
Smith-Waterman score: 2877; 100.0% identity (100.0% similar) in 353 aa overlap (142-494:1-353)
120 130 140 150 160 170
pF1KB5 CGKCKCDQGWYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSG
::::::::::::::::::::::::::::::
NP_001 MCKNSQDIICSNAGTCHCGRCKCDNSDGSG
10 20 30
180 190 200 210 220 230
pF1KB5 LVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRC
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB5 TSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGH
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB5 GQCNCGRCDCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQCNCGRCDCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPP
160 170 180 190 200 210
360 370 380 390 400 410
pF1KB5 GDRRVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDRRVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQS
220 230 240 250 260 270
420 430 440 450 460 470
pF1KB5 KNLCESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNLCESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSC
280 290 300 310 320 330
480 490
pF1KB5 GNCECWDGWNGNACEIWLGSEYP
:::::::::::::::::::::::
NP_001 GNCECWDGWNGNACEIWLGSEYP
340 350
>>NP_001258684 (OMIM: 604234) integrin beta-like protein (445 aa)
initn: 2789 init1: 2789 opt: 2854 Z-score: 1875.4 bits: 356.3 E(85289): 1e-97
Smith-Waterman score: 3470; 90.1% identity (90.1% similar) in 494 aa overlap (1-494:1-445)
10 20 30 40 50 60
pF1KB5 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAG--------------
70 80 90 100
130 140 150 160 170 180
pF1KB5 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC
:::::::::::::::::::::::::
NP_001 -----------------------------------TCHCGRCKCDNSDGSGLVYGKFCEC
110 120 130
190 200 210 220 230 240
pF1KB5 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB5 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB5 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB5 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB5 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW
380 390 400 410 420 430
490
pF1KB5 NGNACEIWLGSEYP
::::::::::::::
NP_001 NGNACEIWLGSEYP
440
>>XP_016878163 (OMIM: 612454) PREDICTED: multiple epider (854 aa)
initn: 196 init1: 100 opt: 538 Z-score: 369.5 bits: 78.6 E(85289): 7.7e-14
Smith-Waterman score: 554; 29.3% identity (44.8% similar) in 475 aa overlap (63-485:24-450)
40 50 60 70 80 90
pF1KB5 RSWPGAACRLSRAESERRCRAPGQPPGAALCHGRGRCD--CGVCICHVTEPGMFFGPLCE
::. :.:. :.: : ::: . :: .
XP_016 MGDRCQEECPFGSFGFQCSQHCDCHNGGQCSPTTGACEC---EPG-YKGP--R
10 20 30 40
100 110 120 130
pF1KB5 CHEWVC-ETYDGSTCAGHGKCD------C----GKCKCDQGWYGDACQYPTNCDLTKKKS
:.: .: : : :. :: : : : :. :: : :. .: . .
XP_016 CQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCN--ESCPVGYYGD
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB5 NQMCKNSQDIICSNAGTCHC--GRCKCDNSDG-SGLVYGKFCECDDR--ECIDDETEEIC
. :. :.:.. :: : : : . : : : . : .: . . :
XP_016 G--CQ--LPCTCQNGADCHSITGGCTC--APGFMGEVCAVSCAAGTYGPNCSSICS---C
110 120 130 140 150
200 210 220 230 240 250
pF1KB5 GGHGKC--YCGNCYCKAGWHGDKCEFQCDITPW--ESKRRCTSPDGKICSNRGTCVCGEC
.. : : :.: :: ::.: : . : : . .. :: .: :: . : :
XP_016 NNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSP----IDGSC
160 170 180 190 200 210
260 270 280 290 300
pF1KB5 TCHDVDPTGDWGDIHGDTCE--CDERDCRAVYDRYSDDFCSGHGQCN--CGRCDCKAGWY
.: : : ::::: : . ... : :: :. :.: : :::
XP_016 SC-----TPGW---LGDTCELPCPDGTFGLNCSEHCD--CSHADGCDPVTGHCCCLAGWT
220 230 240 250 260
310 320 330 340 350 360
pF1KB5 GKK---CEHPQ-SCTLSAEESIRKCQGSSDLPCSGRGKC--ECGKCTCYPPGDRRVYGKT
:. :.:: : . . . : . : . :.: : :.: : :: : :
XP_016 GNLPLLCHHPGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCEC-APGFR---GPL
270 280 290 300 310
370 380 390 400
pF1KB5 CECDDRRCED-LDGVVCGG------HGTCSC----GRCVCERGWFGKLCQHPRKCNMTEE
:. : : . : :. :.. : : : : :. : ::.. .. .
XP_016 CQ---RICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQ
320 330 340 350 360 370
410 420 430 440 450 460
pF1KB5 QSKNLCESADGILCSG-KGSCHC-----GK-C--ICSAEEWYISGEFCDCDDRDCDKHDG
. .:: :.. :: :::.: :: : : : : : . :. :.:
XP_016 DCAQLCSCANNGTCSPIDGSCQCFPGWIGKDCSQACPPGFW---GPAC---FHACSCHNG
380 390 400 410 420
470 480 490
pF1KB5 LICTGNGICSCGNCECWDGWNGNACEIWLGSEYP
:... : :.: ::.: :
XP_016 ASCSAED----GACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQNGASCDHISGKCTCR
430 440 450 460 470 480
>>XP_016878164 (OMIM: 612454) PREDICTED: multiple epider (854 aa)
initn: 196 init1: 100 opt: 538 Z-score: 369.5 bits: 78.6 E(85289): 7.7e-14
Smith-Waterman score: 554; 29.3% identity (44.8% similar) in 475 aa overlap (63-485:24-450)
40 50 60 70 80 90
pF1KB5 RSWPGAACRLSRAESERRCRAPGQPPGAALCHGRGRCD--CGVCICHVTEPGMFFGPLCE
::. :.:. :.: : ::: . :: .
XP_016 MGDRCQEECPFGSFGFQCSQHCDCHNGGQCSPTTGACEC---EPG-YKGP--R
10 20 30 40
100 110 120 130
pF1KB5 CHEWVC-ETYDGSTCAGHGKCD------C----GKCKCDQGWYGDACQYPTNCDLTKKKS
:.: .: : : :. :: : : : :. :: : :. .: . .
XP_016 CQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCN--ESCPVGYYGD
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB5 NQMCKNSQDIICSNAGTCHC--GRCKCDNSDG-SGLVYGKFCECDDR--ECIDDETEEIC
. :. :.:.. :: : : : . : : : . : .: . . :
XP_016 G--CQ--LPCTCQNGADCHSITGGCTC--APGFMGEVCAVSCAAGTYGPNCSSICS---C
110 120 130 140 150
200 210 220 230 240 250
pF1KB5 GGHGKC--YCGNCYCKAGWHGDKCEFQCDITPW--ESKRRCTSPDGKICSNRGTCVCGEC
.. : : :.: :: ::.: : . : : . .. :: .: :: . : :
XP_016 NNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSP----IDGSC
160 170 180 190 200 210
260 270 280 290 300
pF1KB5 TCHDVDPTGDWGDIHGDTCE--CDERDCRAVYDRYSDDFCSGHGQCN--CGRCDCKAGWY
.: : : ::::: : . ... : :: :. :.: : :::
XP_016 SC-----TPGW---LGDTCELPCPDGTFGLNCSEHCD--CSHADGCDPVTGHCCCLAGWT
220 230 240 250 260
310 320 330 340 350 360
pF1KB5 GKK---CEHPQ-SCTLSAEESIRKCQGSSDLPCSGRGKC--ECGKCTCYPPGDRRVYGKT
:. :.:: : . . . : . : . :.: : :.: : :: : :
XP_016 GNLPLLCHHPGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCEC-APGFR---GPL
270 280 290 300 310
370 380 390 400
pF1KB5 CECDDRRCED-LDGVVCGG------HGTCSC----GRCVCERGWFGKLCQHPRKCNMTEE
:. : : . : :. :.. : : : : :. : ::.. .. .
XP_016 CQ---RICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQ
320 330 340 350 360 370
410 420 430 440 450 460
pF1KB5 QSKNLCESADGILCSG-KGSCHC-----GK-C--ICSAEEWYISGEFCDCDDRDCDKHDG
. .:: :.. :: :::.: :: : : : : : . :. :.:
XP_016 DCAQLCSCANNGTCSPIDGSCQCFPGWIGKDCSQACPPGFW---GPAC---FHACSCHNG
380 390 400 410 420
470 480 490
pF1KB5 LICTGNGICSCGNCECWDGWNGNACEIWLGSEYP
:... : :.: ::.: :
XP_016 ASCSAED----GACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQNGASCDHISGKCTCR
430 440 450 460 470 480
>>XP_006724064 (OMIM: 116920,600065) PREDICTED: integrin (700 aa)
initn: 218 init1: 218 opt: 499 Z-score: 345.0 bits: 73.8 E(85289): 1.8e-12
Smith-Waterman score: 501; 34.0% identity (56.6% similar) in 235 aa overlap (87-310:374-574)
60 70 80 90 100 110
pF1KB5 PPGAALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVC--ETYDGSTCAGHGKCDCGK
: :::. : .. : : : :.: .::
XP_006 VKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECR---CRDQSRDRSLCHGKGFLECGI
350 360 370 380 390 400
120 130 140 150 160 170
pF1KB5 CKCDQGWYGDACQYPTNCDLTKKKSNQM---C-KNSQDIICSNAGTCHCGRCKCDNSDGS
:.:: :. : :. :. ..:... : :....::::. : : ::.: : .::
XP_006 CRCDTGYIGKNCE----CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVP
410 420 430 440 450
180 190 200 210 220
pF1KB5 G-LVYGKFCECDDRECIDDETEEICGGHGK--CYCGNCYCKAGWHGDKCEFQCDITPWES
: :.::..:::: .: . . ..::: :. :.::.: :. :..:. : ::. ..
XP_006 GKLIYGQYCECDTINC-ERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC--QCE----RT
460 470 480 490 500
230 240 250 260 270 280
pF1KB5 KRRCTSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTC-ECDERDCRAVYDRYSDD
. : .: ::.:: : :. : :: .: . : :: : . .:
XP_006 TEGCLNPRRVECSGRGRCRCNVCECH----SG----YQLPLCQECP--GCPSPCGKY---
510 520 530 540 550
290 300 310 320 330 340
pF1KB5 FCSGHGQCNCGRC-DCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGK
.:..: . : .::.:
XP_006 -------ISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQ
560 570 580 590 600
>>NP_001290167 (OMIM: 116920,600065) integrin beta-2 iso (700 aa)
initn: 218 init1: 218 opt: 499 Z-score: 345.0 bits: 73.8 E(85289): 1.8e-12
Smith-Waterman score: 501; 34.0% identity (56.6% similar) in 235 aa overlap (87-310:374-574)
60 70 80 90 100 110
pF1KB5 PPGAALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVC--ETYDGSTCAGHGKCDCGK
: :::. : .. : : : :.: .::
NP_001 VKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECR---CRDQSRDRSLCHGKGFLECGI
350 360 370 380 390 400
120 130 140 150 160 170
pF1KB5 CKCDQGWYGDACQYPTNCDLTKKKSNQM---C-KNSQDIICSNAGTCHCGRCKCDNSDGS
:.:: :. : :. :. ..:... : :....::::. : : ::.: : .::
NP_001 CRCDTGYIGKNCE----CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVP
410 420 430 440 450
180 190 200 210 220
pF1KB5 G-LVYGKFCECDDRECIDDETEEICGGHGK--CYCGNCYCKAGWHGDKCEFQCDITPWES
: :.::..:::: .: . . ..::: :. :.::.: :. :..:. : ::. ..
NP_001 GKLIYGQYCECDTINC-ERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC--QCE----RT
460 470 480 490 500
230 240 250 260 270 280
pF1KB5 KRRCTSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTC-ECDERDCRAVYDRYSDD
. : .: ::.:: : :. : :: .: . : :: : . .:
NP_001 TEGCLNPRRVECSGRGRCRCNVCECH----SG----YQLPLCQECP--GCPSPCGKY---
510 520 530 540 550
290 300 310 320 330 340
pF1KB5 FCSGHGQCNCGRC-DCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGK
.:..: . : .::.:
NP_001 -------ISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQ
560 570 580 590 600
>>XP_016883830 (OMIM: 116920,600065) PREDICTED: integrin (700 aa)
initn: 218 init1: 218 opt: 499 Z-score: 345.0 bits: 73.8 E(85289): 1.8e-12
Smith-Waterman score: 501; 34.0% identity (56.6% similar) in 235 aa overlap (87-310:374-574)
60 70 80 90 100 110
pF1KB5 PPGAALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVC--ETYDGSTCAGHGKCDCGK
: :::. : .. : : : :.: .::
XP_016 VKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECR---CRDQSRDRSLCHGKGFLECGI
350 360 370 380 390 400
120 130 140 150 160 170
pF1KB5 CKCDQGWYGDACQYPTNCDLTKKKSNQM---C-KNSQDIICSNAGTCHCGRCKCDNSDGS
:.:: :. : :. :. ..:... : :....::::. : : ::.: : .::
XP_016 CRCDTGYIGKNCE----CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVP
410 420 430 440 450
180 190 200 210 220
pF1KB5 G-LVYGKFCECDDRECIDDETEEICGGHGK--CYCGNCYCKAGWHGDKCEFQCDITPWES
: :.::..:::: .: . . ..::: :. :.::.: :. :..:. : ::. ..
XP_016 GKLIYGQYCECDTINC-ERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC--QCE----RT
460 470 480 490 500
230 240 250 260 270 280
pF1KB5 KRRCTSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTC-ECDERDCRAVYDRYSDD
. : .: ::.:: : :. : :: .: . : :: : . .:
XP_016 TEGCLNPRRVECSGRGRCRCNVCECH----SG----YQLPLCQECP--GCPSPCGKY---
510 520 530 540 550
290 300 310 320 330 340
pF1KB5 FCSGHGQCNCGRC-DCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGK
.:..: . : .::.:
XP_016 -------ISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQ
560 570 580 590 600
494 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:36:22 2016 done: Mon Nov 7 20:36:23 2016
Total Scan time: 8.310 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]