Result of FASTA (ccds) for
pFN21AB5592
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5592, 494 aa
1>>>pF1KB5592 494 - 494 aa - 494 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1981+/-0.00124; mu= 16.2768+/- 0.075
mean_var=220.3811+/-41.990, 0's: 0 Z-trim(110.7): 169 B-trim: 45 in 1/49
Lambda= 0.086395
statistics sampled from 11613 (11798) to 11613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.362), width: 16
Scan time: 3.190
The best scores are: opt bits E(32554)
CCDS9499.1 ITGBL1 gene_id:9358|Hs108|chr13 ( 494) 3968 507.9 9.8e-144
CCDS61361.1 ITGBL1 gene_id:9358|Hs108|chr13 ( 401) 3178 409.3 3.8e-114
CCDS61362.1 ITGBL1 gene_id:9358|Hs108|chr13 ( 353) 2877 371.7 7.1e-103
CCDS73594.1 ITGBL1 gene_id:9358|Hs108|chr13 ( 445) 2854 369.0 5.8e-102
CCDS13716.1 ITGB2 gene_id:3689|Hs108|chr21 ( 769) 499 75.9 1.8e-13
CCDS58599.1 ITGB4 gene_id:3691|Hs108|chr17 (1752) 492 75.5 5.1e-13
CCDS32736.1 ITGB4 gene_id:3691|Hs108|chr17 (1805) 492 75.6 5.2e-13
CCDS11727.1 ITGB4 gene_id:3691|Hs108|chr17 (1822) 492 75.6 5.2e-13
CCDS41237.1 MEGF6 gene_id:1953|Hs108|chr1 (1541) 489 75.1 6.2e-13
CCDS7174.1 ITGB1 gene_id:3688|Hs108|chr10 ( 798) 481 73.6 8.7e-13
CCDS4142.1 MEGF10 gene_id:84466|Hs108|chr5 (1140) 456 70.8 9.1e-12
CCDS11511.1 ITGB3 gene_id:3690|Hs108|chr17 ( 788) 431 67.4 6.5e-11
CCDS74597.1 ITGB6 gene_id:3694|Hs108|chr2 ( 693) 428 66.9 7.8e-11
CCDS74596.1 ITGB6 gene_id:3694|Hs108|chr2 ( 746) 428 67.0 8.2e-11
CCDS2212.1 ITGB6 gene_id:3694|Hs108|chr2 ( 788) 428 67.0 8.4e-11
>>CCDS9499.1 ITGBL1 gene_id:9358|Hs108|chr13 (494 aa)
initn: 3968 init1: 3968 opt: 3968 Z-score: 2694.0 bits: 507.9 E(32554): 9.8e-144
Smith-Waterman score: 3968; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494)
10 20 30 40 50 60
pF1KB5 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW
430 440 450 460 470 480
490
pF1KB5 NGNACEIWLGSEYP
::::::::::::::
CCDS94 NGNACEIWLGSEYP
490
>>CCDS61361.1 ITGBL1 gene_id:9358|Hs108|chr13 (401 aa)
initn: 3174 init1: 3174 opt: 3178 Z-score: 2162.7 bits: 409.3 E(32554): 3.8e-114
Smith-Waterman score: 3178; 99.0% identity (99.2% similar) in 394 aa overlap (101-494:8-401)
80 90 100 110 120 130
pF1KB5 CGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQGWYGDACQYPT
:. :::::::::::::::::::::::::
CCDS61 MNLVAVMGAFNKGHGKCDCGKCKCDQGWYGDACQYPT
10 20 30
140 150 160 170 180 190
pF1KB5 NCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCECDDRECIDDET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 NCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCECDDRECIDDET
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB5 EEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICSNRGTCVCGEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 EEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICSNRGTCVCGEC
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB5 TCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKAGWYGKKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 TCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKAGWYGKKC
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB5 EHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKTCECDDRRCED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 EHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKTCECDDRRCED
220 230 240 250 260 270
380 390 400 410 420 430
pF1KB5 LDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADGILCSGKGSCH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADGILCSGKGSCH
280 290 300 310 320 330
440 450 460 470 480 490
pF1KB5 CGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 CGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLG
340 350 360 370 380 390
pF1KB5 SEYP
::::
CCDS61 SEYP
400
>>CCDS61362.1 ITGBL1 gene_id:9358|Hs108|chr13 (353 aa)
initn: 2877 init1: 2877 opt: 2877 Z-score: 1960.5 bits: 371.7 E(32554): 7.1e-103
Smith-Waterman score: 2877; 100.0% identity (100.0% similar) in 353 aa overlap (142-494:1-353)
120 130 140 150 160 170
pF1KB5 CGKCKCDQGWYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSG
::::::::::::::::::::::::::::::
CCDS61 MCKNSQDIICSNAGTCHCGRCKCDNSDGSG
10 20 30
180 190 200 210 220 230
pF1KB5 LVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRC
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB5 TSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 TSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGH
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB5 GQCNCGRCDCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 GQCNCGRCDCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPP
160 170 180 190 200 210
360 370 380 390 400 410
pF1KB5 GDRRVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 GDRRVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQS
220 230 240 250 260 270
420 430 440 450 460 470
pF1KB5 KNLCESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 KNLCESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSC
280 290 300 310 320 330
480 490
pF1KB5 GNCECWDGWNGNACEIWLGSEYP
:::::::::::::::::::::::
CCDS61 GNCECWDGWNGNACEIWLGSEYP
340 350
>>CCDS73594.1 ITGBL1 gene_id:9358|Hs108|chr13 (445 aa)
initn: 2789 init1: 2789 opt: 2854 Z-score: 1944.0 bits: 369.0 E(32554): 5.8e-102
Smith-Waterman score: 3470; 90.1% identity (90.1% similar) in 494 aa overlap (1-494:1-445)
10 20 30 40 50 60
pF1KB5 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG
::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAG--------------
70 80 90 100
130 140 150 160 170 180
pF1KB5 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC
:::::::::::::::::::::::::
CCDS73 -----------------------------------TCHCGRCKCDNSDGSGLVYGKFCEC
110 120 130
190 200 210 220 230 240
pF1KB5 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB5 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB5 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB5 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB5 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW
380 390 400 410 420 430
490
pF1KB5 NGNACEIWLGSEYP
::::::::::::::
CCDS73 NGNACEIWLGSEYP
440
>>CCDS13716.1 ITGB2 gene_id:3689|Hs108|chr21 (769 aa)
initn: 218 init1: 218 opt: 499 Z-score: 355.3 bits: 75.9 E(32554): 1.8e-13
Smith-Waterman score: 501; 34.0% identity (56.6% similar) in 235 aa overlap (87-310:443-643)
60 70 80 90 100 110
pF1KB5 PPGAALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVC--ETYDGSTCAGHGKCDCGK
: :::. : .. : : : :.: .::
CCDS13 VKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECR---CRDQSRDRSLCHGKGFLECGI
420 430 440 450 460
120 130 140 150 160 170
pF1KB5 CKCDQGWYGDACQYPTNCDLTKKKSNQM---C-KNSQDIICSNAGTCHCGRCKCDNSDGS
:.:: :. : :. :. ..:... : :....::::. : : ::.: : .::
CCDS13 CRCDTGYIGKNCE----CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVP
470 480 490 500 510 520
180 190 200 210 220
pF1KB5 G-LVYGKFCECDDRECIDDETEEICGGHGK--CYCGNCYCKAGWHGDKCEFQCDITPWES
: :.::..:::: .: . . ..::: :. :.::.: :. :..:. : ::. ..
CCDS13 GKLIYGQYCECDTINC-ERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC--QCE----RT
530 540 550 560 570
230 240 250 260 270 280
pF1KB5 KRRCTSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTC-ECDERDCRAVYDRYSDD
. : .: ::.:: : :. : :: .: . : :: : . .:
CCDS13 TEGCLNPRRVECSGRGRCRCNVCECH----SG----YQLPLCQECP--GCPSPCGKY---
580 590 600 610 620
290 300 310 320 330 340
pF1KB5 FCSGHGQCNCGRC-DCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGK
.:..: . : .::.:
CCDS13 -------ISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQ
630 640 650 660 670
>>CCDS58599.1 ITGB4 gene_id:3691|Hs108|chr17 (1752 aa)
initn: 212 init1: 212 opt: 492 Z-score: 347.2 bits: 75.5 E(32554): 5.1e-13
Smith-Waterman score: 534; 34.4% identity (58.5% similar) in 224 aa overlap (267-486:453-649)
240 250 260 270 280 290
pF1KB5 KICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECD-ERDCRAVYDRYSDDFCSGHGQCN
:.: :. ... :.. :: .:.
CCDS58 VCQLPEDQKGNIHLKPSFSDGLKMDAGIICDVCTCELQKEVRSAR-------CSFNGDFV
430 440 450 460 470
300 310 320 330 340 350
pF1KB5 CGRCDCKAGWYGKKCEHPQSCTLSAEESIRKC-QGSSDLPCSGRGKCECGKCTCYPPGDR
::.: :. :: :. : .:. .. .:. : . . : ::::::.:.::.:.:: :.
CCDS58 CGQCVCSEGWSGQTC----NCSTGSLSDIQPCLREGEDKPCSGRGECQCGHCVCY--GEG
480 490 500 510 520
360 370 380 390 400 410
pF1KB5 RVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNL
: :. :: :. .: .: .:. .: :: :.:::: :: : :. : :.
CCDS58 RYEGQFCEYDNFQCPRTSGFLCNDRGRCSMGQCVCEPGWTGPSCDCP--------LSNAT
530 540 550 560 570 580
420 430 440 450 460 470
pF1KB5 CESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNC
: ...: .:.:.: :.::.: : . : . .:. . : :: : . . :: .:
CCDS58 CIDSNGGICNGRGHCECGRCHCHQQSLY-TDTICEINYSAI--HPGL-C--EDLRSCVQC
590 600 610 620 630
480 490
pF1KB5 ECWDGWN--GNACEIWLGSEYP
. : . : .::
CCDS58 QAWGTGEKKGRTCEECNFKVKMVDELKRAEEVVVRCSFRDEDDDCTYSYTMEGDGAPGPN
640 650 660 670 680 690
>>CCDS32736.1 ITGB4 gene_id:3691|Hs108|chr17 (1805 aa)
initn: 212 init1: 212 opt: 492 Z-score: 347.1 bits: 75.6 E(32554): 5.2e-13
Smith-Waterman score: 534; 34.4% identity (58.5% similar) in 224 aa overlap (267-486:453-649)
240 250 260 270 280 290
pF1KB5 KICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECD-ERDCRAVYDRYSDDFCSGHGQCN
:.: :. ... :.. :: .:.
CCDS32 VCQLPEDQKGNIHLKPSFSDGLKMDAGIICDVCTCELQKEVRSAR-------CSFNGDFV
430 440 450 460 470
300 310 320 330 340 350
pF1KB5 CGRCDCKAGWYGKKCEHPQSCTLSAEESIRKC-QGSSDLPCSGRGKCECGKCTCYPPGDR
::.: :. :: :. : .:. .. .:. : . . : ::::::.:.::.:.:: :.
CCDS32 CGQCVCSEGWSGQTC----NCSTGSLSDIQPCLREGEDKPCSGRGECQCGHCVCY--GEG
480 490 500 510 520
360 370 380 390 400 410
pF1KB5 RVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNL
: :. :: :. .: .: .:. .: :: :.:::: :: : :. : :.
CCDS32 RYEGQFCEYDNFQCPRTSGFLCNDRGRCSMGQCVCEPGWTGPSCDCP--------LSNAT
530 540 550 560 570 580
420 430 440 450 460 470
pF1KB5 CESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNC
: ...: .:.:.: :.::.: : . : . .:. . : :: : . . :: .:
CCDS32 CIDSNGGICNGRGHCECGRCHCHQQSLY-TDTICEINYSAI--HPGL-C--EDLRSCVQC
590 600 610 620 630
480 490
pF1KB5 ECWDGWN--GNACEIWLGSEYP
. : . : .::
CCDS32 QAWGTGEKKGRTCEECNFKVKMVDELKRAEEVVVRCSFRDEDDDCTYSYTMEGDGAPGPN
640 650 660 670 680 690
>>CCDS11727.1 ITGB4 gene_id:3691|Hs108|chr17 (1822 aa)
initn: 212 init1: 212 opt: 492 Z-score: 347.0 bits: 75.6 E(32554): 5.2e-13
Smith-Waterman score: 534; 34.4% identity (58.5% similar) in 224 aa overlap (267-486:453-649)
240 250 260 270 280 290
pF1KB5 KICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECD-ERDCRAVYDRYSDDFCSGHGQCN
:.: :. ... :.. :: .:.
CCDS11 VCQLPEDQKGNIHLKPSFSDGLKMDAGIICDVCTCELQKEVRSAR-------CSFNGDFV
430 440 450 460 470
300 310 320 330 340 350
pF1KB5 CGRCDCKAGWYGKKCEHPQSCTLSAEESIRKC-QGSSDLPCSGRGKCECGKCTCYPPGDR
::.: :. :: :. : .:. .. .:. : . . : ::::::.:.::.:.:: :.
CCDS11 CGQCVCSEGWSGQTC----NCSTGSLSDIQPCLREGEDKPCSGRGECQCGHCVCY--GEG
480 490 500 510 520
360 370 380 390 400 410
pF1KB5 RVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNL
: :. :: :. .: .: .:. .: :: :.:::: :: : :. : :.
CCDS11 RYEGQFCEYDNFQCPRTSGFLCNDRGRCSMGQCVCEPGWTGPSCDCP--------LSNAT
530 540 550 560 570 580
420 430 440 450 460 470
pF1KB5 CESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNC
: ...: .:.:.: :.::.: : . : . .:. . : :: : . . :: .:
CCDS11 CIDSNGGICNGRGHCECGRCHCHQQSLY-TDTICEINYSAI--HPGL-C--EDLRSCVQC
590 600 610 620 630
480 490
pF1KB5 ECWDGWN--GNACEIWLGSEYP
. : . : .::
CCDS11 QAWGTGEKKGRTCEECNFKVKMVDELKRAEEVVVRCSFRDEDDDCTYSYTMEGDGAPGPN
640 650 660 670 680 690
>>CCDS41237.1 MEGF6 gene_id:1953|Hs108|chr1 (1541 aa)
initn: 306 init1: 120 opt: 489 Z-score: 345.7 bits: 75.1 E(32554): 6.2e-13
Smith-Waterman score: 567; 28.7% identity (44.4% similar) in 464 aa overlap (63-486:789-1203)
40 50 60 70 80 90
pF1KB5 RSWPGAACRLSRAESERRCRAPGQPPGAALCHGRGRCD--CGVCICHVTEPGMFFGPLCE
:. .::: :.:.: :: : : :.
CCDS41 RCPPGRTGEDCEADCPEGRWGLGCQEICPACQHAARCDPETGACLCL---PG-FVGSRCQ
760 770 780 790 800 810
100 110 120 130 140
pF1KB5 --CHE-WV---CETYDGSTCAGHGKCD--CGKCKCDQGWYGDACQYPTNCDLTKKKSNQM
: : :.: .::. :.: :.:.: :: : .:: :: . .
CCDS41 DVCPAGWYGPSCQTR--CSCANDGHCHPATGHCSCAPGWTGFSCQR--ACDTGHWGPD--
820 830 840 850 860
150 160 170 180 190
pF1KB5 CKNSQDIICSNA-GTCHC--GRCKCDNSDGSGLVYGKFCECDDRECIDDETEEICGGHGK
: :. :: . :.: : : :. .: : : :: ..: . . : . .
CCDS41 C--SHPCNCSAGHGSCDAISGLCLCE----AGYV-GPRCE---QQCPQGHFGPGCEQRCQ
870 880 890 900 910
200 210 220 230 240
pF1KB5 CY----C----GNCYCKAGWHGDKCEFQCDITPW--ESKRRCTSPDGKICSNRGTCVCGE
: : : : : :::.: :: : . . . :. : :. : :
CCDS41 CQHGAACDHVSGACTCPAGWRGTFCEHACPAGFFGLDCRSACNCTAGAACDA----VNGS
920 930 940 950 960 970
250 260 270 280 290 300
pF1KB5 CTCHDVDPTGDWGDIHGDTCECDE--RDCRAVYDRYSDDFCSG-HGQCNCGRCDCKAGWY
: : :.: : ..:: ..: . .. :. ::::.:. ::.
CCDS41 CLC----PAGRRGPRCAETCPAHTYGHNCSQACACFNGASCDPVHGQCHCA-----PGWM
980 990 1000 1010 1020
310 320 330 340 350 360
pF1KB5 GKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCE--CGKCTCYPPGDRRVYGKTCE--
: .: . : ... ..: :.. : :. :.:.: : : : .::
CCDS41 GPSCLQACPAGLYGDNCRHSCL------CQNGGTCDPVSGHCAC-PEG---WAGLACEKE
1030 1040 1050 1060 1070
370 380 390 400 410
pF1KB5 CDDRR----CEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESA
: : :. : . :: :::.: :: : :: : . : . :
CCDS41 CLPRDVRAGCRHSGGCLNGGLCDPHTGRCLCPAGWTGDKCQSPCLRGWFGEACAQRCSCP
1080 1090 1100 1110 1120 1130
420 430 440 450 460 470
pF1KB5 DGILCSG-KGSCHC--GKCICSAEEWYISGEFCDCDDRDCDKHDGLICTG-NGIC--SCG
: : :.:.: : . :. : : .:: . : : : : . :
CCDS41 PGAACHHVTGACRCPPGFTGSGCEQACPPGSF----GEDCAQM--CQCPGENPACHPATG
1140 1150 1160 1170 1180
480 490
pF1KB5 NCECWDGWNGNACEIWLGSEYP
.: : :..: .:.
CCDS41 TCSCAAGYHGPSCQQRCPPGRYGPGCEQLCGCLNGGSCDAATGACRCPTGFLGTDCNLTC
1190 1200 1210 1220 1230 1240
>>CCDS7174.1 ITGB1 gene_id:3688|Hs108|chr10 (798 aa)
initn: 545 init1: 276 opt: 481 Z-score: 343.1 bits: 73.6 E(32554): 8.7e-13
Smith-Waterman score: 500; 32.8% identity (56.5% similar) in 253 aa overlap (88-334:461-680)
60 70 80 90 100 110
pF1KB5 PGAALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTC-AGHGKCDCGKCK
.:::. .. : :.: .:: :.
CCDS71 TSNKCPKKDSDSFKIRPLGFTEEVEVILQYICECECQSEGIPESPKCHEGNGTFECGACR
440 450 460 470 480 490
120 130 140 150 160 170
pF1KB5 CDQGWYGDACQYPTNCDLTKKKSNQMCK--NSQDIICSNAGTCHCGRCKCDNSDGSGLVY
:..: : :. :. ..... . .:. ::..: ::: : : ::.: : . :... .:
CCDS71 CNEGRVGRHCECSTD-EVNSEDMDAYCRKENSSEI-CSNNGECVCGQCVCRKRDNTNEIY
500 510 520 530 540
180 190 200 210 220 230
pF1KB5 -GKFCECDDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTS
:::::::. .: : . ::::.: : : : :. .. :. :. . : . : .
CCDS71 SGKFCECDNFNC-DRSNGLICGGNGVCKCRVCECNPNYTGSACDCSLDTST------CEA
550 560 570 580 590 600
240 250 260 270 280 290
pF1KB5 PDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCE-CDERDCRAVYDRYSDDFCSGHG
.:.::..:: : :: : : .:: ..:.::: : . : .: :. :
CCDS71 SNGQICNGRGICECGVCKC--TDPK-----FQGQTCEMC--QTCLGV--------CAEHK
610 620 630 640
300 310 320 330 340 350
pF1KB5 QCNCGRCDCKAGWYGKKCEH-PQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPP
.: .:.: :.: . : :. .: : .. . ::
CCDS71 EC----VQCRAFNKGEKKDTCTQECSYF---NITKVESRDKLPQPVQPDPVSHCKEKDVD
650 660 670 680 690
360 370 380 390 400 410
pF1KB5 GDRRVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQS
CCDS71 DCWFYFTYSVNGNNEVMVHVVENPECPTGPDIIPIVAGVVAGIVLIGLALLLIWKLLMII
700 710 720 730 740 750
494 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:36:21 2016 done: Mon Nov 7 20:36:21 2016
Total Scan time: 3.190 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]