Result of FASTA (omim) for
pFN21AB5272
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5272, 248 aa
1>>>pF1KB5272 248 - 248 aa - 248 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.7683+/-0.000628; mu= -19.0410+/- 0.039
mean_var=535.4217+/-111.670, 0's: 0 Z-trim(117.9): 60 B-trim: 452 in 1/54
Lambda= 0.055428
statistics sampled from 30293 (30349) to 30293 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.356), width: 16
Scan time: 5.820
The best scores are: opt bits E(85289)
NP_001036816 (OMIM: 191030,255310,609284) tropomyo ( 248) 1511 135.0 1.2e-31
NP_705935 (OMIM: 191030,255310,609284) tropomyosin ( 248) 1431 128.6 1e-29
NP_001036818 (OMIM: 191030,255310,609284) tropomyo ( 247) 1351 122.2 8.8e-28
NP_001265118 (OMIM: 191030,255310,609284) tropomyo ( 248) 1284 116.8 3.6e-26
NP_001036817 (OMIM: 191030,255310,609284) tropomyo ( 247) 1271 115.8 7.4e-26
NP_001288218 (OMIM: 115196,191010,611878) tropomyo ( 248) 1246 113.8 3e-25
NP_003281 (OMIM: 600317) tropomyosin alpha-4 chain ( 248) 1238 113.1 4.6e-25
XP_005260099 (OMIM: 600317) PREDICTED: tropomyosin ( 248) 1209 110.8 2.3e-24
NP_001317275 (OMIM: 115196,191010,611878) tropomyo ( 248) 1190 109.3 6.6e-24
NP_001018008 (OMIM: 115196,191010,611878) tropomyo ( 245) 1184 108.8 9.2e-24
XP_005254704 (OMIM: 115196,191010,611878) PREDICTE ( 251) 1179 108.4 1.2e-23
XP_016878029 (OMIM: 115196,191010,611878) PREDICTE ( 275) 1161 107.0 3.6e-23
NP_001317273 (OMIM: 115196,191010,611878) tropomyo ( 248) 1158 106.7 3.9e-23
NP_689476 (OMIM: 191030,255310,609284) tropomyosin ( 285) 1125 104.1 2.7e-22
XP_005254708 (OMIM: 115196,191010,611878) PREDICTE ( 248) 1107 102.6 6.6e-22
NP_001018004 (OMIM: 115196,191010,611878) tropomyo ( 284) 1104 102.5 8.6e-22
XP_005254707 (OMIM: 115196,191010,611878) PREDICTE ( 248) 1102 102.2 8.7e-22
XP_005254694 (OMIM: 115196,191010,611878) PREDICTE ( 326) 1104 102.5 9.5e-22
NP_001018007 (OMIM: 115196,191010,611878) tropomyo ( 284) 1100 102.1 1.1e-21
NP_001317280 (OMIM: 115196,191010,611878) tropomyo ( 245) 1096 101.8 1.2e-21
NP_001288155 (OMIM: 108120,190990,255310,601680,60 ( 284) 1087 101.1 2.2e-21
XP_005254703 (OMIM: 115196,191010,611878) PREDICTE ( 275) 1073 100.0 4.7e-21
XP_016882677 (OMIM: 600317) PREDICTED: tropomyosin ( 268) 1063 99.2 8e-21
NP_001138632 (OMIM: 600317) tropomyosin alpha-4 ch ( 284) 1063 99.2 8.3e-21
NP_001018005 (OMIM: 115196,191010,611878) tropomyo ( 284) 1048 98.0 1.9e-20
XP_016870580 (OMIM: 108120,190990,255310,601680,60 ( 284) 1046 97.8 2.1e-20
NP_003280 (OMIM: 108120,190990,255310,601680,60928 ( 284) 1046 97.8 2.1e-20
NP_001288173 (OMIM: 115196,191010,611878) tropomyo ( 284) 1044 97.7 2.4e-20
XP_016882678 (OMIM: 600317) PREDICTED: tropomyosin ( 245) 1038 97.1 3e-20
XP_011526533 (OMIM: 600317) PREDICTED: tropomyosin ( 245) 1038 97.1 3e-20
XP_005254702 (OMIM: 115196,191010,611878) PREDICTE ( 365) 1042 97.6 3.2e-20
XP_006722928 (OMIM: 600317) PREDICTED: tropomyosin ( 284) 1034 96.9 4.2e-20
XP_005254695 (OMIM: 115196,191010,611878) PREDICTE ( 371) 1037 97.2 4.3e-20
NP_998839 (OMIM: 108120,190990,255310,601680,60928 ( 284) 1022 95.9 8.1e-20
NP_001018006 (OMIM: 115196,191010,611878) tropomyo ( 284) 1016 95.4 1.1e-19
XP_016878023 (OMIM: 115196,191010,611878) PREDICTE ( 395) 1019 95.8 1.2e-19
XP_016878024 (OMIM: 115196,191010,611878) PREDICTE ( 311) 1015 95.4 1.3e-19
NP_001018020 (OMIM: 115196,191010,611878) tropomyo ( 284) 1012 95.1 1.4e-19
NP_001265119 (OMIM: 191030,255310,609284) tropomyo ( 227) 1008 94.7 1.5e-19
XP_016870579 (OMIM: 108120,190990,255310,601680,60 ( 284) 981 92.6 7.8e-19
NP_001288156 (OMIM: 108120,190990,255310,601680,60 ( 284) 981 92.6 7.8e-19
NP_001265120 (OMIM: 191030,255310,609284) tropomyo ( 158) 971 91.6 9e-19
NP_000357 (OMIM: 115196,191010,611878) tropomyosin ( 284) 965 91.3 1.9e-18
XP_016878027 (OMIM: 115196,191010,611878) PREDICTE ( 368) 965 91.5 2.3e-18
XP_006720730 (OMIM: 115196,191010,611878) PREDICTE ( 368) 960 91.1 3e-18
XP_016878028 (OMIM: 115196,191010,611878) PREDICTE ( 365) 954 90.6 4.2e-18
XP_005254696 (OMIM: 115196,191010,611878) PREDICTE ( 371) 949 90.2 5.6e-18
XP_016878025 (OMIM: 115196,191010,611878) PREDICTE ( 395) 931 88.8 1.6e-17
XP_016878026 (OMIM: 115196,191010,611878) PREDICTE ( 311) 927 88.3 1.7e-17
NP_001265117 (OMIM: 191030,255310,609284) tropomyo ( 182) 910 86.8 2.9e-17
>>NP_001036816 (OMIM: 191030,255310,609284) tropomyosin (248 aa)
initn: 1511 init1: 1511 opt: 1511 Z-score: 688.9 bits: 135.0 E(85289): 1.2e-31
Smith-Waterman score: 1511; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KB5 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
190 200 210 220 230 240
pF1KB5 TLLDLNEM
::::::::
NP_001 TLLDLNEM
>>NP_705935 (OMIM: 191030,255310,609284) tropomyosin alp (248 aa)
initn: 1431 init1: 1431 opt: 1431 Z-score: 654.3 bits: 128.6 E(85289): 1e-29
Smith-Waterman score: 1431; 94.0% identity (97.2% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KB5 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::.: :..:... . .::: : : :::::
NP_705 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
190 200 210 220 230 240
pF1KB5 TLLDLNEM
::::::::
NP_705 TLLDLNEM
>>NP_001036818 (OMIM: 191030,255310,609284) tropomyosin (247 aa)
initn: 1351 init1: 1351 opt: 1351 Z-score: 619.7 bits: 122.2 E(85289): 8.8e-28
Smith-Waterman score: 1351; 93.1% identity (95.1% similar) in 245 aa overlap (1-245:1-245)
10 20 30 40 50 60
pF1KB5 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
:::::::::::::::::::::::::::::::::::::::::..: :.. . :
NP_001 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL
190 200 210 220 230 240
pF1KB5 TLLDLNEM
:: ::
NP_001 TLHDLCD
>>NP_001265118 (OMIM: 191030,255310,609284) tropomyosin (248 aa)
initn: 1432 init1: 1284 opt: 1284 Z-score: 590.8 bits: 116.8 E(85289): 3.6e-26
Smith-Waterman score: 1284; 85.9% identity (93.1% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KB5 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::.: :..:... . .::: : : :::::
NP_001 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
::::::::::::::::::::::::::::::::::::::::::.: : .. .. ::.
NP_001 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDH
190 200 210 220 230 240
pF1KB5 TLLDLNEM
.: :.. .
NP_001 ALNDMTSI
>>NP_001036817 (OMIM: 191030,255310,609284) tropomyosin (247 aa)
initn: 1271 init1: 1271 opt: 1271 Z-score: 585.2 bits: 115.8 E(85289): 7.4e-26
Smith-Waterman score: 1271; 86.9% identity (92.2% similar) in 245 aa overlap (1-245:1-245)
10 20 30 40 50 60
pF1KB5 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::.: :..:... . .::: : : :::::
NP_001 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
:::::::::::::::::::::::::::::::::::::::::..: :.. . :
NP_001 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL
190 200 210 220 230 240
pF1KB5 TLLDLNEM
:: ::
NP_001 TLHDLCD
>>NP_001288218 (OMIM: 115196,191010,611878) tropomyosin (248 aa)
initn: 1351 init1: 1246 opt: 1246 Z-score: 574.3 bits: 113.8 E(85289): 3e-25
Smith-Waterman score: 1246; 81.9% identity (94.8% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KB5 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
::: ...:::.:::. ::.::: ::::: ::::.. ::. :: :::.::::::::::::
NP_001 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
:::::::::::::::::::::::::::::::::::.:: :::::::.:::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
.::::::::::::::::.::::.::::::.:.::.:::::::.:::::::::::::::::
NP_001 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
:::.::::::.:.:::::::::::::::::.::::.:::::.:. .:::.: ..::::
NP_001 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ
190 200 210 220 230 240
pF1KB5 TLLDLNEM
:::.::.:
NP_001 TLLELNNM
>>NP_003281 (OMIM: 600317) tropomyosin alpha-4 chain iso (248 aa)
initn: 1238 init1: 1238 opt: 1238 Z-score: 570.9 bits: 113.1 E(85289): 4.6e-25
Smith-Waterman score: 1238; 80.9% identity (95.9% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB5 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
:::....::::::::.::::::.::.::. ::::..:::. ::.::..::.:::::::::
NP_003 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
::::::::::::::::::::::::::::::::::::::.:::::::.::.::::::::::
NP_003 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
:::::::::::::::.::.:::.:::::..: ::..::::::::::::::::: .::::.
NP_003 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
::::::::::.:.:::::::::::::::.::::::::::::.:: .:::.. .. :::
NP_003 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ
190 200 210 220 230 240
pF1KB5 TLLDLNEM
:: .::
NP_003 TLNELNCI
>>XP_005260099 (OMIM: 600317) PREDICTED: tropomyosin alp (248 aa)
initn: 1372 init1: 1209 opt: 1209 Z-score: 558.4 bits: 110.8 E(85289): 2.3e-24
Smith-Waterman score: 1209; 78.2% identity (94.4% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KB5 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
:::....::::::::.::::::.::.::. ::::..:::. ::.::..::.:::::::::
XP_005 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
::::::::::::::::::::::::::::::::::::::.:::::::.::.::::::::::
XP_005 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
:::::::::::::::.::.:::.:::::..: ::..::::::::::::::::: .::::.
XP_005 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
::::::::::.:.:::::::::::::::.:::::::::::::.: : .. .. ::.
XP_005 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEDELYAQKLKYKAISEELDH
190 200 210 220 230 240
pF1KB5 TLLDLNEM
.: :.. .
XP_005 ALNDMTSL
>>NP_001317275 (OMIM: 115196,191010,611878) tropomyosin (248 aa)
initn: 1295 init1: 1190 opt: 1190 Z-score: 550.1 bits: 109.3 E(85289): 6.6e-24
Smith-Waterman score: 1190; 78.6% identity (92.3% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KB5 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
::: ...:::.:::. ::.::: ::::: ::::.. ::. :: :::.::::::::::::
NP_001 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
:::::::::::::::::::::::::::::::::::.:: :::::::.:::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
.::::::::::::::::.::::.::::::.:.::.:::::::.:::::::::::::::::
NP_001 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
:::.::::::.:.:::::::::::::::::.::::.::::::.: : .. .. ::.
NP_001 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH
190 200 210 220 230 240
pF1KB5 TLLDLNEM
.: :.. .
NP_001 ALNDMTSI
>>NP_001018008 (OMIM: 115196,191010,611878) tropomyosin (245 aa)
initn: 1169 init1: 1169 opt: 1184 Z-score: 547.6 bits: 108.8 E(85289): 9.2e-24
Smith-Waterman score: 1184; 79.4% identity (91.9% similar) in 247 aa overlap (1-247:1-244)
10 20 30 40 50 60
pF1KB5 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
::: ...:::.:::. ::.::: ::::: ::::.. ::. :: :::.::::::::::::
NP_001 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
:::::::::::::::::::::::::::::::::::.:: :::::::.:::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
.::::::::::::::::.::::.::::::.:.::.:::::::.:::::::::::::::::
NP_001 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
:::.::::::.:.:::::::::::::::::.::::.::::::.: :.. .:. ..
NP_001 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQN---RRLTNE
190 200 210 220 230
pF1KB5 TLLDLNEM
: :::
NP_001 LKLALNED
240
248 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:22:27 2016 done: Sat Nov 5 12:22:28 2016
Total Scan time: 5.820 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]