FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5261, 202 aa
  1>>>pF1KB5261 202 - 202 aa - 202 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0991+/-0.000584; mu= 16.2460+/- 0.035
 mean_var=80.3922+/-16.267, 0's: 0 Z-trim(114.5): 11  B-trim: 724 in 1/50
 Lambda= 0.143043
 statistics sampled from 15050 (15060) to 15050 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.463), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS9292.1 IL17D gene_id:53342|Hs108|chr13         ( 202) 1423 302.0 1.6e-82
CCDS42217.1 IL17C gene_id:27189|Hs108|chr16        ( 197)  272 64.4 5.2e-11


>>CCDS9292.1 IL17D gene_id:53342|Hs108|chr13              (202 aa)
 initn: 1423 init1: 1423 opt: 1423  Z-score: 1594.8  bits: 302.0 E(32554): 1.6e-82
Smith-Waterman score: 1423; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB5 MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 GPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 TGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 TGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSI
              130       140       150       160       170       180

              190       200  
pF1KB5 NSSIDKQGAKLLLGPNDAPAGP
       ::::::::::::::::::::::
CCDS92 NSSIDKQGAKLLLGPNDAPAGP
              190       200  

>>CCDS42217.1 IL17C gene_id:27189|Hs108|chr16             (197 aa)
 initn: 285 init1: 203 opt: 272  Z-score: 311.2  bits: 64.4 E(32554): 5.2e-11
Smith-Waterman score: 272; 33.5% identity (60.5% similar) in 167 aa overlap (17-170:32-192)

                             10        20        30        40      
pF1KB5               MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQ--LYG
                                     :.:.       : : :  : .:: .   .:
CCDS42 TLLPGLLFLTWLHTCLAHHDPSLRGHPHSHGTPHCYSAEELPLGQA--PPHLLARGAKWG
              10        20        30        40          50         

            50        60        70         80        90       100  
pF1KB5 R-LAAGVLSAFHHTLQLGPREQARNAS-CPAGGRPADRRFRPPTNLRSVSPWAYRISYDP
       . : ....:... . . : .:.   .. ::.  :: .. ..  :. ::.::: ::.. : 
CCDS42 QALPVALVSSLEAASHRGRHERPSATTQCPVL-RP-EEVLEADTHQRSISPWRYRVDTDE
      60        70        80        90         100       110       

            110       120       130       140       150            
pF1KB5 ARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRTPACA---------GGR
        :::. :  : ::::::. .  :.: . . :. . .  .:::: : :.         :. 
CCDS42 DRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRRRP-CSRDGSGLPTPGAF
       120       130       140       150       160        170      

           160       170       180       190       200  
pF1KB5 SVYTEAYVTIPVGCTCVPEPEKDADSINSSIDKQGAKLLLGPNDAPAGP
       . .:: .. .:::::::                                
CCDS42 AFHTE-FIHVPVGCTCVLPRSV                           
        180        190                                  




202 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:47:10 2016 done: Sun Nov  6 23:47:11 2016
 Total Scan time:  2.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]