FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5194, 163 aa
  1>>>pF1KB5194 163 - 163 aa - 163 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0224+/-0.000257; mu= 14.6082+/- 0.016
 mean_var=67.8117+/-13.456, 0's: 0 Z-trim(120.9): 13  B-trim: 0 in 0/53
 Lambda= 0.155748
 statistics sampled from 36840 (36853) to 36840 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.432), width:  16
 Scan time:  5.850

The best scores are:                                      opt bits E(85289)
NP_733779 (OMIM: 601434) S-phase kinase-associated ( 163) 1102 255.3 3.1e-68
NP_008861 (OMIM: 601434) S-phase kinase-associated ( 160) 1029 238.9 2.7e-63


>>NP_733779 (OMIM: 601434) S-phase kinase-associated pro  (163 aa)
 initn: 1102 init1: 1102 opt: 1102  Z-score: 1346.0  bits: 255.3 E(85289): 3.1e-68
Smith-Waterman score: 1102; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KB5 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
               70        80        90       100       110       120

              130       140       150       160   
pF1KB5 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
       :::::::::::::::::::::::::::::::::::::::::::
NP_733 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
              130       140       150       160   

>>NP_008861 (OMIM: 601434) S-phase kinase-associated pro  (160 aa)
 initn: 1023 init1: 1023 opt: 1029  Z-score: 1257.4  bits: 238.9 E(85289): 2.7e-63
Smith-Waterman score: 1029; 96.9% identity (98.8% similar) in 160 aa overlap (1-160:1-159)

               10        20        30        40        50        60
pF1KB5 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
               70        80        90       100       110       120

              130       140       150       160   
pF1KB5 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
       ::::::::::::::::::::::::::::::::: . .:.:   
NP_008 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVGS-TQFCL  
              130       140       150        160  




163 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:23:36 2016 done: Thu Nov  3 22:23:37 2016
 Total Scan time:  5.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]