Result of FASTA (ccds) for
pFN21AB5056
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5056, 557 aa
1>>>pF1KB5056 557 - 557 aa - 557 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0285+/-0.00088; mu= 12.0928+/- 0.053
mean_var=146.2491+/-30.434, 0's: 0 Z-trim(111.9): 57 B-trim: 39 in 1/50
Lambda= 0.106054
statistics sampled from 12663 (12718) to 12663 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.391), width: 16
Scan time: 3.810
The best scores are: opt bits E(32554)
CCDS7551.1 NEURL1 gene_id:9148|Hs108|chr10 ( 574) 3786 591.1 1.2e-168
CCDS47342.1 NEURL1B gene_id:54492|Hs108|chr5 ( 555) 962 159.0 1.4e-38
CCDS83042.1 NEURL1B gene_id:54492|Hs108|chr5 ( 373) 913 151.3 1.9e-36
CCDS78085.1 NEURL1B gene_id:54492|Hs108|chr5 ( 315) 591 102.0 1.1e-21
CCDS74542.1 NEURL3 gene_id:93082|Hs108|chr2 ( 262) 474 84.0 2.4e-16
>>CCDS7551.1 NEURL1 gene_id:9148|Hs108|chr10 (574 aa)
initn: 3786 init1: 3786 opt: 3786 Z-score: 3141.1 bits: 591.1 E(32554): 1.2e-168
Smith-Waterman score: 3786; 99.8% identity (100.0% similar) in 548 aa overlap (10-557:27-574)
10 20 30 40
pF1KB5 MGGQITRSTLHDSIGGPFPVTSHRCHHKQKHCPAVLPSGGLPA
:.::::::::::::::::::::::::::::::::
CCDS75 MGNNFSSIPSLPRGNPSRAPRGHPQNLKDSIGGPFPVTSHRCHHKQKHCPAVLPSGGLPA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB5 TPLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TPLLFHPHTKGSQILMDLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSGA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB5 LRLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWVDKKGRVFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LRLGFTSKDPSRIHPDSLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWVDKKGRVFH
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB5 RINDSAVMLFFSGVRTADPLWALVDVYGLTRGVQLLDSELVLPDCLRPRSFTALRRPSLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RINDSAVMLFFSGVRTADPLWALVDVYGLTRGVQLLDSELVLPDCLRPRSFTALRRPSLR
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB5 READDARLSVSLCDLNVPGADGDEAAPAAGCPIPQNSLNSQHSRALPAQLDGDLRFHALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 READDARLSVSLCDLNVPGADGDEAAPAAGCPIPQNSLNSQHSRALPAQLDGDLRFHALR
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB5 AGAHVRILDEQTVARVEHGRDERALVFTSRPVRVAETIFVKVTRSGGARPGALSFGVTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AGAHVRILDEQTVARVEHGRDERALVFTSRPVRVAETIFVKVTRSGGARPGALSFGVTTC
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB5 DPGTLRPADLPFSPEALVDRKEFWAVCRVPGPLHSGDILGLVVNADGELHLSHNGAAAGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DPGTLRPADLPFSPEALVDRKEFWAVCRVPGPLHSGDILGLVVNADGELHLSHNGAAAGM
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB5 QLCVDASQPLWMLFGLHGTITQIRILGSTILAERGIPSLPCSPASTPTSPSALGSRLSDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QLCVDASQPLWMLFGLHGTITQIRILGSTILAERGIPSLPCSPASTPTSPSALGSRLSDP
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB5 LLSTCSSGPLGSSAGGTAPNSPVSLPESPVTPGLGQWSDECTICYEHAVDTVIYTCGHMC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LLSTCSSGPLGSSAGGTAPNSPVSLPESPVTPGLGQWSDECTICYEHAVDTVIYTCGHMC
490 500 510 520 530 540
530 540 550
pF1KB5 LCYACGLRLKKALHACCPICRRPIKDIIKTYRSS
::::::::::::::::::::::::::::::::::
CCDS75 LCYACGLRLKKALHACCPICRRPIKDIIKTYRSS
550 560 570
>>CCDS47342.1 NEURL1B gene_id:54492|Hs108|chr5 (555 aa)
initn: 1374 init1: 588 opt: 962 Z-score: 806.1 bits: 159.0 E(32554): 1.4e-38
Smith-Waterman score: 1493; 43.6% identity (67.5% similar) in 567 aa overlap (8-555:3-554)
10 20 30 40 50
pF1KB5 MGGQITRSTLHDSIGGPFPVTSHRCHHKQKHC-PAVLPSGGLPATPLLFHPHTKGSQILM
.:.: .. : : . : . : :. : .: :: ..::... .
CCDS47 MGNTVHRTLPDPSPPA--RLLATRPCCGPGPERRPVLGEAPR-FHAQAKGKNVRL
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 DLSHKAVKRQASFCNAITFSNRPVLIYEQVRLKITKKQCCWSGALRLGFTSKDPSRIHPD
: . . :. ::::..::..::. .::::::... . ::::::.:::..::: . .
CCDS47 DGHSRRATRRNSFCNGVTFTQRPIRLYEQVRLRLVAVRPGWSGALRFGFTAHDPSLMSAQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 SLPKYACPDLVSQSGFWAKALPEEFANEGNIIAFWVDKKGRVFHRINDSAVMLFFSGVRT
..:::::::::.. :.:::::::..: . ...:.:.:..::::. .::. .:: :: .
CCDS47 DIPKYACPDLVTRPGYWAKALPENLALRDTVLAYWADRHGRVFYSVNDGEPVLFHCGVAV
120 130 140 150 160 170
180 190 200 210 220
pF1KB5 ADPLWALVDVYGLTRGVQLLDS---ELVLPDCLRPRSFTALRRPSLR-------READDA
. :::::.::::.: ::::.: . . : : :.: :: . : ..
CCDS47 GGPLWALIDVYGITDEVQLLESAFADTLTPARLSQARFSACLPPSSHDAANFDNNELENN
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB5 RLSVSLCDLNVPGADGDEAAPAAGCPIPQNSLNSQHSRALPAQLDGDLRFHALRAGAHVR
.. ..: : . : : : ::. :: . . . . :: :..:::::: : : :
CCDS47 QVVAKLGHLALGRAPGPPPADAAAAAIPCGPRERPRPASSPALLEADLRFHATR-GPDVS
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB5 ILDEQTVARVEHGRDERALVFTSRPVRVAETIFVKVTRSGGARPGALSFGVTTCDPGTLR
. .. :: . . :.:::. ::.: .:..::.: : : : ::::.::.:.::::.::
CCDS47 LSADRKVACAPRPDGGRTLVFSERPLRPGESLFVEVGRPGLAAPGALAFGITSCDPGVLR
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB5 PADLPFSPEALVDRKEFWAVCRVPGPLHSG-DILGLVVNADGELHLSHNGAAAGMQLCVD
: .:: .:.::.::::.:.: :. ::. :: : :.... :.. :. :: : ::::
CCDS47 PNELPADPDALLDRKEYWVVARA-GPVPSGGDALSFTLRPGGDVLLGINGRPRGRLLCVD
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB5 ASQPLWMLFGLHGTIT-QIRILGSTILAERGIPSLPCSPASTPTSPSALGSRL---SDPL
..: :: .:...: .. :.:.::. : :::.: : : ::. ::
CCDS47 TTQALWAFFAVRGGVAGQLRLLGT----------LQSSPATTTPSGSLSGSQDDSDSDMT
420 430 440 450 460
470 480 490 500 510 520
pF1KB5 LSTCSSGPLGSSAGGTAPNSPVSLPESPV-TPG--LGQWSDECTICYEHAVDTVIYTCGH
.:. .:. . :. :::.::.: : ::: .: : . :::.:.. ::::::::::
CCDS47 FSVNQSSSASESSLVTAPSSPLSPPVSPVFSPPEPAGIKNGECTVCFDGEVDTVIYTCGH
470 480 490 500 510 520
530 540 550
pF1KB5 MCLCYACGLRLKKALHACCPICRRPIKDIIKTYRSS
::::..::::::. .::::::::::::.:: ::
CCDS47 MCLCHSCGLRLKRQARACCPICRRPIKDVIKIYRP
530 540 550
>>CCDS83042.1 NEURL1B gene_id:54492|Hs108|chr5 (373 aa)
initn: 852 init1: 406 opt: 913 Z-score: 767.9 bits: 151.3 E(32554): 1.9e-36
Smith-Waterman score: 929; 44.7% identity (66.3% similar) in 356 aa overlap (208-555:31-372)
180 190 200 210 220 230
pF1KB5 RTADPLWALVDVYGLTRGVQLLDSELVLPDCLRPRSFTALRRPSLRREADDARLSVSLCD
:: : : : . : .. .. ..:
CCDS83 MGNTVHRTLPESAFADTLTPARLSQARFSACLPPSSHDAANFDN--NELENNQVVAKLGH
10 20 30 40 50
240 250 260 270 280 290
pF1KB5 LNVPGADGDEAAPAAGCPIPQNSLNSQHSRALPAQLDGDLRFHALRAGAHVRILDEQTVA
: . : : : ::. :: . . . . :: :..:::::: : : : . .. ::
CCDS83 LALGRAPGPPPADAAAAAIPCGPRERPRPASSPALLEADLRFHATR-GPDVSLSADRKVA
60 70 80 90 100 110
300 310 320 330 340 350
pF1KB5 RVEHGRDERALVFTSRPVRVAETIFVKVTRSGGARPGALSFGVTTCDPGTLRPADLPFSP
. . :.:::. ::.: .:..::.: : : : ::::.::.:.::::.::: .:: .:
CCDS83 CAPRPDGGRTLVFSERPLRPGESLFVEVGRPGLAAPGALAFGITSCDPGVLRPNELPADP
120 130 140 150 160 170
360 370 380 390 400 410
pF1KB5 EALVDRKEFWAVCRVPGPLHSG-DILGLVVNADGELHLSHNGAAAGMQLCVDASQPLWML
.::.::::.:.: :. ::. :: : :.... :.. :. :: : ::::..: :: .
CCDS83 DALLDRKEYWVVARA-GPVPSGGDALSFTLRPGGDVLLGINGRPRGRLLCVDTTQALWAF
180 190 200 210 220 230
420 430 440 450 460 470
pF1KB5 FGLHGTIT-QIRILGSTILAERGIPSLPCSPASTPTSPSALGSRL---SDPLLSTCSSGP
:...: .. :.:.::. : :::.: : : ::. :: .:. .:.
CCDS83 FAVRGGVAGQLRLLGT----------LQSSPATTTPSGSLSGSQDDSDSDMTFSVNQSSS
240 250 260 270 280
480 490 500 510 520
pF1KB5 LGSSAGGTAPNSPVSLPESPV-TPG--LGQWSDECTICYEHAVDTVIYTCGHMCLCYACG
. :. :::.::.: : ::: .: : . :::.:.. ::::::::::::::..::
CCDS83 ASESSLVTAPSSPLSPPVSPVFSPPEPAGIKNGECTVCFDGEVDTVIYTCGHMCLCHSCG
290 300 310 320 330 340
530 540 550
pF1KB5 LRLKKALHACCPICRRPIKDIIKTYRSS
::::. .::::::::::::.:: ::
CCDS83 LRLKRQARACCPICRRPIKDVIKIYRP
350 360 370
>>CCDS78085.1 NEURL1B gene_id:54492|Hs108|chr5 (315 aa)
initn: 912 init1: 582 opt: 591 Z-score: 502.6 bits: 102.0 E(32554): 1.1e-21
Smith-Waterman score: 607; 39.0% identity (61.7% similar) in 287 aa overlap (278-555:40-314)
250 260 270 280 290 300
pF1KB5 AAPAAGCPIPQNSLNSQHSRALPAQLDGDLRFHALRAGAHVRILDEQTVARVEHGRDERA
:::: : .:: :: .. .... .
CCDS78 PDPSPPARLLATRPCCGPGPERRPVLGEAPRFHAQAKGKNVR-LDGHSRRATRRNSFCNG
10 20 30 40 50 60
310 320 330 340 350 360
pF1KB5 LVFTSRPVRVAETIFVKVTRSGGARPGALSFGVTTCDPGTLRPADLP-FSPEALVDRKEF
..::.::.:. : . .... . ::: :: :. ::. . :.: .. :: : .
CCDS78 VTFTQRPIRLYEQVRLRLVAVRPGWSGALRFGFTAHDPSLMSAQDIPKYACPDLVTRPGY
70 80 90 100 110 120
370 380 390 400 410 420
pF1KB5 WAVCRVPGPLHSGD-ILGLVVNADGELHLSHNGAAAGMQLC-VDASQPLWMLFGLHGTIT
:: .: : : .:. .. :.. : : . . : : .. ::: :. ..:
CCDS78 WAKA-LPENLALRDTVLAYWADRHGRVFYSVNDGEPVLFHCGVAVGGPLWALIDVYGITD
130 140 150 160 170 180
430 440 450 460 470 480
pF1KB5 QIRILGSTILAERGIPSLPCSPASTPTSPSALGSRL---SDPLLSTCSSGPLGSSAGGTA
....::. : :::.: : : ::. :: .:. .:. . :. ::
CCDS78 EVQLLGT----------LQSSPATTTPSGSLSGSQDDSDSDMTFSVNQSSSASESSLVTA
190 200 210 220 230
490 500 510 520 530
pF1KB5 PNSPVSLPESPV-TPG--LGQWSDECTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHA
:.::.: : ::: .: : . :::.:.. ::::::::::::::..::::::. .:
CCDS78 PSSPLSPPVSPVFSPPEPAGIKNGECTVCFDGEVDTVIYTCGHMCLCHSCGLRLKRQARA
240 250 260 270 280 290
540 550
pF1KB5 CCPICRRPIKDIIKTYRSS
:::::::::::.:: ::
CCDS78 CCPICRRPIKDVIKIYRP
300 310
>>CCDS74542.1 NEURL3 gene_id:93082|Hs108|chr2 (262 aa)
initn: 680 init1: 474 opt: 474 Z-score: 406.9 bits: 84.0 E(32554): 2.4e-16
Smith-Waterman score: 474; 41.5% identity (70.4% similar) in 159 aa overlap (42-200:14-172)
20 30 40 50 60 70
pF1KB5 DSIGGPFPVTSHRCHHKQKHCPAVLPSGGLPATPLLFHPHTKGSQILMDLSHKAVKRQAS
: : :: ..::.:. .: ..:...
CCDS74 MGAQLCFEANAKAPREALRFHAEAKGAQVRLDTRGCIAHRRTT
10 20 30 40
80 90 100 110 120 130
pF1KB5 FCNAITFSNRPVLIYEQVRLKITKKQCCWSGALRLGFTSKDPSRIHPDSLPKYACPDLVS
: ..:.::.::: . :.: :.. ... : :.::.::: ::. . ::: . ::::
CCDS74 FHDGIVFSQRPVRLGERVALRVLREESGWCGGLRVGFTRLDPACVSVPSLPPFLCPDLEE
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB5 QSGFWAKALPEEFANEGNIIAFWVDKKGRVFHRINDSAVMLFFSGVRTADPLWALVDVYG
:: :: .::: : :... ::::..: .: ..: . .:. :: .. ::::..::::
CCDS74 QSPTWAAVLPEGCALTGDLVRFWVDRRGCLFAKVNAGCRLLLREGVPVGAPLWAVMDVYG
110 120 130 140 150 160
200 210 220 230 240 250
pF1KB5 LTRGVQLLDSELVLPDCLRPRSFTALRRPSLRREADDARLSVSLCDLNVPGADGDEAAPA
:....:::
CCDS74 TTKAIELLDPTASRLPTPMPWDLSNKAVPEPKATPGEECAICFYHAANTRLVPCGHTYFC
170 180 190 200 210 220
557 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:04:26 2016 done: Mon Nov 7 04:04:26 2016
Total Scan time: 3.810 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]