Result of FASTA (omim) for
pFN21AB4689
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4689, 440 aa
1>>>pF1KB4689 440 - 440 aa - 440 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9063+/-0.000392; mu= 4.8244+/- 0.025
mean_var=335.3521+/-70.872, 0's: 0 Z-trim(122.8): 43 B-trim: 769 in 1/58
Lambda= 0.070036
statistics sampled from 41456 (41501) to 41456 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.487), width: 16
Scan time: 10.960
The best scores are: opt bits E(85289)
NP_001305116 (OMIM: 600712,616580) heterogeneous n ( 440) 3032 319.8 8.7e-87
XP_005252020 (OMIM: 600712,616580) PREDICTED: hete ( 440) 3032 319.8 8.7e-87
XP_005252022 (OMIM: 600712,616580) PREDICTED: hete ( 440) 3032 319.8 8.7e-87
XP_011516918 (OMIM: 600712,616580) PREDICTED: hete ( 439) 2993 315.9 1.3e-85
NP_001305115 (OMIM: 600712,616580) heterogeneous n ( 439) 2993 315.9 1.3e-85
XP_016870158 (OMIM: 600712,616580) PREDICTED: hete ( 439) 2993 315.9 1.3e-85
NP_002131 (OMIM: 600712,616580) heterogeneous nucl ( 464) 2340 249.9 1e-65
NP_112553 (OMIM: 600712,616580) heterogeneous nucl ( 464) 2340 249.9 1e-65
XP_005252017 (OMIM: 600712,616580) PREDICTED: hete ( 464) 2340 249.9 1e-65
NP_001305117 (OMIM: 600712,616580) heterogeneous n ( 463) 2301 246.0 1.5e-64
XP_016870157 (OMIM: 600712,616580) PREDICTED: hete ( 463) 2301 246.0 1.5e-64
NP_112552 (OMIM: 600712,616580) heterogeneous nucl ( 463) 2301 246.0 1.5e-64
NP_001122386 (OMIM: 601210) poly(rC)-binding prote ( 318) 345 48.2 3.8e-05
NP_001092090 (OMIM: 601210) poly(rC)-binding prote ( 331) 345 48.2 3.9e-05
NP_001122384 (OMIM: 601210) poly(rC)-binding prote ( 361) 345 48.2 4.1e-05
NP_114366 (OMIM: 601210) poly(rC)-binding protein ( 362) 345 48.2 4.1e-05
NP_065389 (OMIM: 608502) poly(rC)-binding protein ( 371) 344 48.1 4.5e-05
XP_016862407 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 342 47.9 4.8e-05
XP_016862408 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 342 47.9 4.8e-05
XP_016862406 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 342 47.9 4.8e-05
XP_006713334 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 346) 342 47.9 5e-05
NP_001167571 (OMIM: 608503) poly(rC)-binding prote ( 403) 342 48.0 5.5e-05
XP_006713331 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 342 48.0 5.5e-05
NP_127501 (OMIM: 608503) poly(rC)-binding protein ( 403) 342 48.0 5.5e-05
NP_127503 (OMIM: 608503) poly(rC)-binding protein ( 403) 342 48.0 5.5e-05
XP_005265388 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 342 48.0 5.5e-05
XP_006713332 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 342 48.0 5.5e-05
XP_005265387 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 426) 342 48.0 5.6e-05
XP_016862405 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 426) 342 48.0 5.6e-05
NP_001122385 (OMIM: 601210) poly(rC)-binding prote ( 335) 283 41.9 0.003
>>NP_001305116 (OMIM: 600712,616580) heterogeneous nucle (440 aa)
initn: 3032 init1: 3032 opt: 3032 Z-score: 1679.1 bits: 319.8 E(85289): 8.7e-87
Smith-Waterman score: 3032; 100.0% identity (100.0% similar) in 440 aa overlap (1-440:1-440)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
370 380 390 400 410 420
430 440
pF1KB4 QNAQYLLQNSVKQYADVEGF
::::::::::::::::::::
NP_001 QNAQYLLQNSVKQYADVEGF
430 440
>>XP_005252020 (OMIM: 600712,616580) PREDICTED: heteroge (440 aa)
initn: 3032 init1: 3032 opt: 3032 Z-score: 1679.1 bits: 319.8 E(85289): 8.7e-87
Smith-Waterman score: 3032; 100.0% identity (100.0% similar) in 440 aa overlap (1-440:1-440)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
370 380 390 400 410 420
430 440
pF1KB4 QNAQYLLQNSVKQYADVEGF
::::::::::::::::::::
XP_005 QNAQYLLQNSVKQYADVEGF
430 440
>>XP_005252022 (OMIM: 600712,616580) PREDICTED: heteroge (440 aa)
initn: 3032 init1: 3032 opt: 3032 Z-score: 1679.1 bits: 319.8 E(85289): 8.7e-87
Smith-Waterman score: 3032; 100.0% identity (100.0% similar) in 440 aa overlap (1-440:1-440)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
370 380 390 400 410 420
430 440
pF1KB4 QNAQYLLQNSVKQYADVEGF
::::::::::::::::::::
XP_005 QNAQYLLQNSVKQYADVEGF
430 440
>>XP_011516918 (OMIM: 600712,616580) PREDICTED: heteroge (439 aa)
initn: 3071 init1: 2993 opt: 2993 Z-score: 1657.8 bits: 315.9 E(85289): 1.3e-85
Smith-Waterman score: 2993; 99.8% identity (100.0% similar) in 435 aa overlap (1-435:1-435)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
370 380 390 400 410 420
430 440
pF1KB4 QNAQYLLQNSVKQYADVEGF
::::::::::::::.
XP_011 QNAQYLLQNSVKQYSGKFF
430
>>NP_001305115 (OMIM: 600712,616580) heterogeneous nucle (439 aa)
initn: 3071 init1: 2993 opt: 2993 Z-score: 1657.8 bits: 315.9 E(85289): 1.3e-85
Smith-Waterman score: 2993; 99.8% identity (100.0% similar) in 435 aa overlap (1-435:1-435)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
370 380 390 400 410 420
430 440
pF1KB4 QNAQYLLQNSVKQYADVEGF
::::::::::::::.
NP_001 QNAQYLLQNSVKQYSGKFF
430
>>XP_016870158 (OMIM: 600712,616580) PREDICTED: heteroge (439 aa)
initn: 3071 init1: 2993 opt: 2993 Z-score: 1657.8 bits: 315.9 E(85289): 1.3e-85
Smith-Waterman score: 2993; 99.8% identity (100.0% similar) in 435 aa overlap (1-435:1-435)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEYQHYKGSDFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI
370 380 390 400 410 420
430 440
pF1KB4 QNAQYLLQNSVKQYADVEGF
::::::::::::::.
XP_016 QNAQYLLQNSVKQYSGKFF
430
>>NP_002131 (OMIM: 600712,616580) heterogeneous nuclear (464 aa)
initn: 3018 init1: 2340 opt: 2340 Z-score: 1300.9 bits: 249.9 E(85289): 1e-65
Smith-Waterman score: 2974; 94.8% identity (94.8% similar) in 464 aa overlap (1-440:1-464)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEE----------
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
70 80 90 100 110 120
120 130 140 150
pF1KB4 --------------YQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB4 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB4 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB4 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
370 380 390 400 410 420
400 410 420 430 440
pF1KB4 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
::::::::::::::::::::::::::::::::::::::::::::
NP_002 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
430 440 450 460
>>NP_112553 (OMIM: 600712,616580) heterogeneous nuclear (464 aa)
initn: 3018 init1: 2340 opt: 2340 Z-score: 1300.9 bits: 249.9 E(85289): 1e-65
Smith-Waterman score: 2974; 94.8% identity (94.8% similar) in 464 aa overlap (1-440:1-464)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEE----------
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
70 80 90 100 110 120
120 130 140 150
pF1KB4 --------------YQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
::::::::::::::::::::::::::::::::::::::::::::::
NP_112 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB4 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB4 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB4 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
370 380 390 400 410 420
400 410 420 430 440
pF1KB4 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
::::::::::::::::::::::::::::::::::::::::::::
NP_112 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
430 440 450 460
>>XP_005252017 (OMIM: 600712,616580) PREDICTED: heteroge (464 aa)
initn: 3018 init1: 2340 opt: 2340 Z-score: 1300.9 bits: 249.9 E(85289): 1e-65
Smith-Waterman score: 2974; 94.8% identity (94.8% similar) in 464 aa overlap (1-440:1-464)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEE----------
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
70 80 90 100 110 120
120 130 140 150
pF1KB4 --------------YQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB4 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB4 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB4 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
370 380 390 400 410 420
400 410 420 430 440
pF1KB4 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
::::::::::::::::::::::::::::::::::::::::::::
XP_005 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
430 440 450 460
>>NP_001305117 (OMIM: 600712,616580) heterogeneous nucle (463 aa)
initn: 3057 init1: 2301 opt: 2301 Z-score: 1279.6 bits: 246.0 E(85289): 1.5e-64
Smith-Waterman score: 2935; 94.6% identity (94.8% similar) in 459 aa overlap (1-435:1-459)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEE----------
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
70 80 90 100 110 120
120 130 140 150
pF1KB4 --------------YQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB4 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB4 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB4 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
370 380 390 400 410 420
400 410 420 430 440
pF1KB4 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
::::::::::::::::::::::::::::::::::::::.
NP_001 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF
430 440 450 460
440 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:22:23 2016 done: Thu Nov 3 15:22:24 2016
Total Scan time: 10.960 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]