Result of FASTA (omim) for
pFN21AB4605
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4605, 472 aa
1>>>pF1KB4605 472 - 472 aa - 472 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2801+/-0.000374; mu= 17.7645+/- 0.023
mean_var=63.5502+/-12.675, 0's: 0 Z-trim(111.9): 42 B-trim: 116 in 1/50
Lambda= 0.160885
statistics sampled from 20575 (20616) to 20575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.242), width: 16
Scan time: 8.400
The best scores are: opt bits E(85289)
NP_001406 (OMIM: 300161,300987) eukaryotic transla ( 472) 3080 723.9 2.4e-208
XP_016862469 (OMIM: 607695) PREDICTED: selenocyste ( 491) 278 73.5 1.5e-12
XP_016862466 (OMIM: 607695) PREDICTED: selenocyste ( 553) 278 73.5 1.6e-12
XP_016862465 (OMIM: 607695) PREDICTED: selenocyste ( 571) 278 73.5 1.7e-12
XP_016862464 (OMIM: 607695) PREDICTED: selenocyste ( 575) 278 73.5 1.7e-12
NP_068756 (OMIM: 607695) selenocysteine-specific e ( 596) 278 73.6 1.7e-12
XP_005247753 (OMIM: 607695) PREDICTED: selenocyste ( 541) 243 65.4 4.4e-10
XP_016879108 (OMIM: 602389,610678) PREDICTED: elon ( 455) 223 60.7 9.6e-09
NP_003312 (OMIM: 602389,610678) elongation factor ( 455) 223 60.7 9.6e-09
XP_011544230 (OMIM: 602389,610678) PREDICTED: elon ( 427) 207 57.0 1.2e-07
XP_016862468 (OMIM: 607695) PREDICTED: selenocyste ( 525) 173 49.2 3.4e-05
XP_016862467 (OMIM: 607695) PREDICTED: selenocyste ( 536) 173 49.2 3.4e-05
NP_060564 (OMIM: 300418) eukaryotic peptide chain ( 628) 173 49.2 3.9e-05
NP_001123479 (OMIM: 139259) eukaryotic peptide cha ( 499) 165 47.3 0.00012
NP_001123478 (OMIM: 139259) eukaryotic peptide cha ( 636) 165 47.3 0.00014
NP_002085 (OMIM: 139259) eukaryotic peptide chain ( 637) 165 47.3 0.00014
NP_001949 (OMIM: 602959,616393,616409) elongation ( 463) 158 45.6 0.00034
NP_001393 (OMIM: 130590) elongation factor 1-alpha ( 462) 151 44.0 0.001
XP_011533816 (OMIM: 130590) PREDICTED: elongation ( 462) 151 44.0 0.001
>>NP_001406 (OMIM: 300161,300987) eukaryotic translation (472 aa)
initn: 3080 init1: 3080 opt: 3080 Z-score: 3861.6 bits: 723.9 E(85289): 2.4e-208
Smith-Waterman score: 3080; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KB4 MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV
370 380 390 400 410 420
430 440 450 460 470
pF1KB4 KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD
430 440 450 460 470
>>XP_016862469 (OMIM: 607695) PREDICTED: selenocysteine- (491 aa)
initn: 243 init1: 109 opt: 278 Z-score: 346.5 bits: 73.5 E(85289): 1.5e-12
Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297)
10 20 30 40 50 60
pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT
:....:.:..::. ::.....:.: . :
XP_016 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST
10 20 30
70 80 90 100 110 120
pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN
. : .. ::.::. ::.. : : : :: : : :: . .
XP_016 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP
40 50 60 70 80
130 140 150 160 170 180
pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK
. . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: :
XP_016 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK
90 100 110 120 130 140
190 200 210 220
pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK
...: :::::. :.. . ... .: :. . ::::::..:.
XP_016 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP
150 160 170 180 190
230 240 250 260 270 280
pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK
.: . : ....: .: :: : : :. : : : .: : :.::.: ..
XP_016 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC
.:. .:. :.. . .:. :. : . : : .:. :..:: :
XP_016 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL
260 270 280 290
350 360 370 380 390 400
pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI
XP_016 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF
300 310 320 330 340 350
>>XP_016862466 (OMIM: 607695) PREDICTED: selenocysteine- (553 aa)
initn: 243 init1: 109 opt: 278 Z-score: 345.7 bits: 73.5 E(85289): 1.6e-12
Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297)
10 20 30 40 50 60
pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT
:....:.:..::. ::.....:.: . :
XP_016 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST
10 20 30
70 80 90 100 110 120
pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN
. : .. ::.::. ::.. : : : :: : : :: . .
XP_016 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP
40 50 60 70 80
130 140 150 160 170 180
pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK
. . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: :
XP_016 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK
90 100 110 120 130 140
190 200 210 220
pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK
...: :::::. :.. . ... .: :. . ::::::..:.
XP_016 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP
150 160 170 180 190
230 240 250 260 270 280
pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK
.: . : ....: .: :: : : :. : : : .: : :.::.: ..
XP_016 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC
.:. .:. :.. . .:. :. : . : : .:. :..:: :
XP_016 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL
260 270 280 290
350 360 370 380 390 400
pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI
XP_016 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF
300 310 320 330 340 350
>>XP_016862465 (OMIM: 607695) PREDICTED: selenocysteine- (571 aa)
initn: 243 init1: 109 opt: 278 Z-score: 345.5 bits: 73.5 E(85289): 1.7e-12
Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297)
10 20 30 40 50 60
pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT
:....:.:..::. ::.....:.: . :
XP_016 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST
10 20 30
70 80 90 100 110 120
pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN
. : .. ::.::. ::.. : : : :: : : :: . .
XP_016 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP
40 50 60 70 80
130 140 150 160 170 180
pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK
. . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: :
XP_016 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK
90 100 110 120 130 140
190 200 210 220
pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK
...: :::::. :.. . ... .: :. . ::::::..:.
XP_016 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP
150 160 170 180 190
230 240 250 260 270 280
pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK
.: . : ....: .: :: : : :. : : : .: : :.::.: ..
XP_016 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC
.:. .:. :.. . .:. :. : . : : .:. :..:: :
XP_016 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL
260 270 280 290
350 360 370 380 390 400
pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI
XP_016 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF
300 310 320 330 340 350
>>XP_016862464 (OMIM: 607695) PREDICTED: selenocysteine- (575 aa)
initn: 243 init1: 109 opt: 278 Z-score: 345.4 bits: 73.5 E(85289): 1.7e-12
Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297)
10 20 30 40 50 60
pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT
:....:.:..::. ::.....:.: . :
XP_016 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST
10 20 30
70 80 90 100 110 120
pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN
. : .. ::.::. ::.. : : : :: : : :: . .
XP_016 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP
40 50 60 70 80
130 140 150 160 170 180
pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK
. . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: :
XP_016 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK
90 100 110 120 130 140
190 200 210 220
pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK
...: :::::. :.. . ... .: :. . ::::::..:.
XP_016 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP
150 160 170 180 190
230 240 250 260 270 280
pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK
.: . : ....: .: :: : : :. : : : .: : :.::.: ..
XP_016 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC
.:. .:. :.. . .:. :. : . : : .:. :..:: :
XP_016 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL
260 270 280 290
350 360 370 380 390 400
pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI
XP_016 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF
300 310 320 330 340 350
>>NP_068756 (OMIM: 607695) selenocysteine-specific elong (596 aa)
initn: 273 init1: 109 opt: 278 Z-score: 345.2 bits: 73.6 E(85289): 1.7e-12
Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297)
10 20 30 40 50 60
pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT
:....:.:..::. ::.....:.: . :
NP_068 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST
10 20 30
70 80 90 100 110 120
pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN
. : .. ::.::. ::.. : : : :: : : :: . .
NP_068 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP
40 50 60 70 80
130 140 150 160 170 180
pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK
. . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: :
NP_068 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK
90 100 110 120 130 140
190 200 210 220
pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK
...: :::::. :.. . ... .: :. . ::::::..:.
NP_068 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP
150 160 170 180 190
230 240 250 260 270 280
pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK
.: . : ....: .: :: : : :. : : : .: : :.::.: ..
NP_068 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC
.:. .:. :.. . .:. :. : . : : .:. :..:: :
NP_068 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL
260 270 280 290
350 360 370 380 390 400
pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI
NP_068 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF
300 310 320 330 340 350
>>XP_005247753 (OMIM: 607695) PREDICTED: selenocysteine- (541 aa)
initn: 273 init1: 109 opt: 243 Z-score: 301.9 bits: 65.4 E(85289): 4.4e-10
Smith-Waterman score: 276; 30.8% identity (62.1% similar) in 198 aa overlap (38-227:4-187)
10 20 30 40 50 60
pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT
:....:.:..::. ::.....:.: . :
XP_005 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST
10 20 30
70 80 90 100 110 120
pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN
. : .. ::.::. ::.. .. : : :: : : :: . .
XP_005 AAFDKQPQSRERGITLDLGFSCFSV--------PLPARLRS---SLP-EFQAAPEAEPEP
40 50 60 70 80
130 140 150 160 170 180
pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK
. . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: :
XP_005 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK
90 100 110 120 130 140
190 200 210 220 230
pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQLKYNIEVVCEYI
...: :::::. :.. . ... .: :. . ::::::..:.
XP_005 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP
150 160 170 180 190
240 250 260 270 280 290
pF1KB4 VKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPG
XP_005 QGIPELIEVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHA
200 210 220 230 240 250
>>XP_016879108 (OMIM: 602389,610678) PREDICTED: elongati (455 aa)
initn: 242 init1: 90 opt: 223 Z-score: 278.0 bits: 60.7 E(85289): 9.6e-09
Smith-Waterman score: 319; 27.1% identity (53.4% similar) in 358 aa overlap (42-385:61-369)
20 30 40 50 60 70
pF1KB4 QPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKN
.:.:::::: :::.:.. ::.
XP_016 LRLLKAPALPLLCRGLAVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAIT---------
40 50 60 70 80
80 90 100 110 120 130
pF1KB4 ELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVS
.: . : :. : :. : . :. . ... :. : .:: .
XP_016 ----KILAEGGGAKFKKYEEID-NAPEERARGITINAAHVEYSTA----------ARHYA
90 100 110 120
140 150 160 170 180 190
pF1KB4 FVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNK
.::::: . .:..:.: .:. .:..:.:.. :.::: ::: . . ..:... ::
XP_016 HTDCPGHADYVKNMITGTAPLDGCILVVAANDG-PMPQTREHLLLARQIGVEHVVVYVNK
130 140 150 160 170 180
200 210 220 230
pF1KB4 IDLVKESQAKEQYE-QILAFVQ--GTVAEGAPIIPISAQ-----------LKYNIEVVCE
: :..:. : : .: .. : .: .:.: :: :: ... . .
XP_016 ADAVQDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCALEGRDPELGLK-SVQKLLD
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 YIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVR
. :::: ::. .: :. ... . :: .: :. :.. .:.:: :.: :.
XP_016 AVDTYIPVPARDLE-KPFLLPVEAV-YSVPG------RGTVVTGTLERGILKKGDECELL
250 260 270 280 290
300 310 320 330 340 350
pF1KB4 PGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQV
:. : : . .... :..:. : : .:. .. : : : : :
XP_016 ---------GH--SKNIRTVVTGIEMFHKSLERAEAGDNLGALVR---GLKREDLRRGLV
300 310 320 330 340
360 370 380 390 400 410
pF1KB4 LGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRV
. :.. . ..: . ..: . : :
XP_016 MVKPGSI-KPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPEKELA
350 360 370 380 390 400
>>NP_003312 (OMIM: 602389,610678) elongation factor Tu, (455 aa)
initn: 242 init1: 90 opt: 223 Z-score: 278.0 bits: 60.7 E(85289): 9.6e-09
Smith-Waterman score: 319; 27.1% identity (53.4% similar) in 358 aa overlap (42-385:61-369)
20 30 40 50 60 70
pF1KB4 QPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKN
.:.:::::: :::.:.. ::.
NP_003 LRLLKAPALPLLCRGLAVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAIT---------
40 50 60 70 80
80 90 100 110 120 130
pF1KB4 ELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVS
.: . : :. : :. : . :. . ... :. : .:: .
NP_003 ----KILAEGGGAKFKKYEEID-NAPEERARGITINAAHVEYSTA----------ARHYA
90 100 110 120
140 150 160 170 180 190
pF1KB4 FVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNK
.::::: . .:..:.: .:. .:..:.:.. :.::: ::: . . ..:... ::
NP_003 HTDCPGHADYVKNMITGTAPLDGCILVVAANDG-PMPQTREHLLLARQIGVEHVVVYVNK
130 140 150 160 170 180
200 210 220 230
pF1KB4 IDLVKESQAKEQYE-QILAFVQ--GTVAEGAPIIPISAQ-----------LKYNIEVVCE
: :..:. : : .: .. : .: .:.: :: :: ... . .
NP_003 ADAVQDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCALEGRDPELGLK-SVQKLLD
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 YIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVR
. :::: ::. .: :. ... . :: .: :. :.. .:.:: :.: :.
NP_003 AVDTYIPVPARDLE-KPFLLPVEAV-YSVPG------RGTVVTGTLERGILKKGDECELL
250 260 270 280 290
300 310 320 330 340 350
pF1KB4 PGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQV
:. : : . .... :..:. : : .:. .. : : : : :
NP_003 ---------GH--SKNIRTVVTGIEMFHKSLERAEAGDNLGALVR---GLKREDLRRGLV
300 310 320 330 340
360 370 380 390 400 410
pF1KB4 LGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRV
. :.. . ..: . ..: . : :
NP_003 MVKPGSI-KPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPEKELA
350 360 370 380 390 400
>>XP_011544230 (OMIM: 602389,610678) PREDICTED: elongati (427 aa)
initn: 242 init1: 90 opt: 207 Z-score: 258.3 bits: 57.0 E(85289): 1.2e-07
Smith-Waterman score: 269; 28.0% identity (54.3% similar) in 289 aa overlap (42-301:61-321)
20 30 40 50 60 70
pF1KB4 QPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKN
.:.:::::: :::.:.. ::.
XP_011 LRLLKAPALPLLCRGLAVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAIT---------
40 50 60 70 80
80 90 100 110 120 130
pF1KB4 ELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVS
.: . : :. : :. : . :. . ... :. : .:: .
XP_011 ----KILAEGGGAKFKKYEEID-NAPEERARGITINAAHVEYSTA----------ARHYA
90 100 110 120
140 150 160 170 180 190
pF1KB4 FVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNK
.::::: . .:..:.: .:. .:..:.:.. :.::: ::: . . ..:... ::
XP_011 HTDCPGHADYVKNMITGTAPLDGCILVVAANDG-PMPQTREHLLLARQIGVEHVVVYVNK
130 140 150 160 170 180
200 210 220 230
pF1KB4 IDLVKESQAKEQYE-QILAFVQ--GTVAEGAPIIPISAQ-----------LKYNIEVVCE
: :..:. : : .: .. : .: .:.: :: :: ... . .
XP_011 ADAVQDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCALEGRDPELGLK-SVQKLLD
190 200 210 220 230 240
240 250 260 270 280
pF1KB4 YIVKKIPVPPRDFTSEPRLIVIRS-FDVNKPGCEVD-------DLKGGVAG---GSILKG
. :::: ::. .: :. ... ..: : : .:. . :: :....:
XP_011 AVDTYIPVPARDLE-KPFLLPVEAVYSVPGRGTVVTGIEMFHKSLERAEAGDNLGALVRG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB4 V----LKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTK
. :. : . :.:: .
XP_011 LKREDLRRGL-VMVKPGSIKPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMAC
310 320 330 340 350 360
472 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 14:28:45 2016 done: Mon Nov 7 14:28:46 2016
Total Scan time: 8.400 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]