Result of FASTA (omim) for
pFN21AB4483
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4483, 533 aa
1>>>pF1KB4483 533 - 533 aa - 533 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3261+/-0.000333; mu= 14.5332+/- 0.021
mean_var=104.5097+/-20.601, 0's: 0 Z-trim(117.5): 43 B-trim: 215 in 1/56
Lambda= 0.125457
statistics sampled from 29568 (29611) to 29568 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.347), width: 16
Scan time: 9.920
The best scores are: opt bits E(85289)
XP_016874631 (OMIM: 601873) PREDICTED: beta-1,4 N- ( 533) 3561 655.2 1.4e-187
NP_001469 (OMIM: 601873) beta-1,4 N-acetylgalactos ( 533) 3561 655.2 1.4e-187
XP_011536450 (OMIM: 601873) PREDICTED: beta-1,4 N- ( 539) 3539 651.2 2.3e-186
NP_001263397 (OMIM: 601873) beta-1,4 N-acetylgalac ( 478) 2681 495.9 1.2e-139
XP_005268830 (OMIM: 601873) PREDICTED: beta-1,4 N- ( 544) 2525 467.7 4.1e-131
XP_011536449 (OMIM: 601873) PREDICTED: beta-1,4 N- ( 550) 2503 463.7 6.5e-130
XP_016874629 (OMIM: 601873) PREDICTED: beta-1,4 N- ( 578) 2215 411.6 3.3e-114
XP_016874630 (OMIM: 601873) PREDICTED: beta-1,4 N- ( 578) 2215 411.6 3.3e-114
NP_001263398 (OMIM: 601873) beta-1,4 N-acetylgalac ( 328) 1568 294.3 3.8e-79
XP_016879662 (OMIM: 111730) PREDICTED: beta-1,4 N- ( 480) 1189 225.8 2.3e-58
NP_001152860 (OMIM: 111730) beta-1,4 N-acetylgalac ( 480) 1189 225.8 2.3e-58
NP_001152859 (OMIM: 111730) beta-1,4 N-acetylgalac ( 506) 1189 225.8 2.4e-58
NP_703147 (OMIM: 111730) beta-1,4 N-acetylgalactos ( 566) 1189 225.9 2.6e-58
XP_011522616 (OMIM: 111730) PREDICTED: beta-1,4 N- ( 320) 378 78.9 2.5e-14
>>XP_016874631 (OMIM: 601873) PREDICTED: beta-1,4 N-acet (533 aa)
initn: 3561 init1: 3561 opt: 3561 Z-score: 3488.5 bits: 655.2 E(85289): 1.4e-187
Smith-Waterman score: 3561; 100.0% identity (100.0% similar) in 533 aa overlap (1-533:1-533)
10 20 30 40 50 60
pF1KB4 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 FTARTRLERLVDVLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTARTRLERLVDVLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 HELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVV
430 440 450 460 470 480
490 500 510 520 530
pF1KB4 VDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
490 500 510 520 530
>>NP_001469 (OMIM: 601873) beta-1,4 N-acetylgalactosamin (533 aa)
initn: 3561 init1: 3561 opt: 3561 Z-score: 3488.5 bits: 655.2 E(85289): 1.4e-187
Smith-Waterman score: 3561; 100.0% identity (100.0% similar) in 533 aa overlap (1-533:1-533)
10 20 30 40 50 60
pF1KB4 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 FTARTRLERLVDVLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTARTRLERLVDVLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 HELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVV
430 440 450 460 470 480
490 500 510 520 530
pF1KB4 VDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
490 500 510 520 530
>>XP_011536450 (OMIM: 601873) PREDICTED: beta-1,4 N-acet (539 aa)
initn: 3547 init1: 1993 opt: 3539 Z-score: 3466.9 bits: 651.2 E(85289): 2.3e-186
Smith-Waterman score: 3539; 98.9% identity (98.9% similar) in 539 aa overlap (1-533:1-539)
10 20 30 40 50 60
pF1KB4 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
130 140 150 160 170 180
190 200 210 220 230
pF1KB4 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADT---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTECK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 ---VRFSTEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHKVRFSTEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 LITSIRRFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LITSIRRFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLW
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 VDDDFVFTARTRLERLVDVLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDDDFVFTARTRLERLVDVLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLR
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 QRRGFHHELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QRRGFHHELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVG
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB4 SCSDVVVDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCSDVVVDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
490 500 510 520 530
>>NP_001263397 (OMIM: 601873) beta-1,4 N-acetylgalactosa (478 aa)
initn: 3178 init1: 2681 opt: 2681 Z-score: 2628.4 bits: 495.9 E(85289): 1.2e-139
Smith-Waterman score: 3072; 89.7% identity (89.7% similar) in 533 aa overlap (1-533:1-478)
10 20 30 40 50 60
pF1KB4 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
:::::::::::::
NP_001 AHIPVRIKEQVVG-----------------------------------------------
70
130 140 150 160 170 180
pF1KB4 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------SQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
80 90 100 110 120
190 200 210 220 230 240
pF1KB4 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB4 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
190 200 210 220 230 240
310 320 330 340 350 360
pF1KB4 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFV
250 260 270 280 290 300
370 380 390 400 410 420
pF1KB4 FTARTRLERLVDVLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTARTRLERLVDVLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFH
310 320 330 340 350 360
430 440 450 460 470 480
pF1KB4 HELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVV
370 380 390 400 410 420
490 500 510 520 530
pF1KB4 VDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
430 440 450 460 470
>>XP_005268830 (OMIM: 601873) PREDICTED: beta-1,4 N-acet (544 aa)
initn: 3547 init1: 2525 opt: 2525 Z-score: 2475.0 bits: 467.7 E(85289): 4.1e-131
Smith-Waterman score: 3529; 98.0% identity (98.0% similar) in 544 aa overlap (1-533:1-544)
10 20 30 40 50 60
pF1KB4 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFV
310 320 330 340 350 360
370 380 390 400
pF1KB4 FTARTRLERLVDVLERTPLDL-----------VGGAVREISGFATTYRQLLSVEPGAPGL
::::::::::::::::::::: ::::::::::::::::::::::::::::
XP_005 FTARTRLERLVDVLERTPLDLARLEATSLSLQVGGAVREISGFATTYRQLLSVEPGAPGL
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB4 GNCLRQRRGFHHELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNCLRQRRGFHHELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLG
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB4 SLRVGSCSDVVVDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLRVGSCSDVVVDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQC
490 500 510 520 530 540
530
pF1KB4 MTSQ
::::
XP_005 MTSQ
>>XP_011536449 (OMIM: 601873) PREDICTED: beta-1,4 N-acet (550 aa)
initn: 3533 init1: 1568 opt: 2503 Z-score: 2453.4 bits: 463.7 E(85289): 6.5e-130
Smith-Waterman score: 3507; 96.9% identity (96.9% similar) in 550 aa overlap (1-533:1-550)
10 20 30 40 50 60
pF1KB4 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
130 140 150 160 170 180
190 200 210 220 230
pF1KB4 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADT---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTECK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 ---VRFSTEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHKVRFSTEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 LITSIRRFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LITSIRRFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLW
310 320 330 340 350 360
360 370 380 390 400
pF1KB4 VDDDFVFTARTRLERLVDVLERTPLDL-----------VGGAVREISGFATTYRQLLSVE
::::::::::::::::::::::::::: ::::::::::::::::::::::
XP_011 VDDDFVFTARTRLERLVDVLERTPLDLARLEATSLSLQVGGAVREISGFATTYRQLLSVE
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB4 PGAPGLGNCLRQRRGFHHELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGAPGLGNCLRQRRGFHHELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEF
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB4 FLDGLGSLRVGSCSDVVVDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLDGLGSLRVGSCSDVVVDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFF
490 500 510 520 530 540
530
pF1KB4 KHRLQCMTSQ
::::::::::
XP_011 KHRLQCMTSQ
550
>>XP_016874629 (OMIM: 601873) PREDICTED: beta-1,4 N-acet (578 aa)
initn: 2215 init1: 2215 opt: 2215 Z-score: 2171.4 bits: 411.6 E(85289): 3.3e-114
Smith-Waterman score: 3368; 92.0% identity (92.0% similar) in 565 aa overlap (1-520:1-565)
10 20 30 40 50 60
pF1KB4 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
250 260 270 280 290 300
310 320 330
pF1KB4 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGK--------------------------
::::::::::::::::::::::::::::::::::
XP_016 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKLLAFRKHSKVWRRIQAEKGRGRERKV
310 320 330 340 350 360
340 350 360 370
pF1KB4 -------------------GWFAGRNLAVSQVTTKYVLWVDDDFVFTARTRLERLVDVLE
:::::::::::::::::::::::::::::::::::::::::
XP_016 AEGHVLFLQPPQPHTPFCQGWFAGRNLAVSQVTTKYVLWVDDDFVFTARTRLERLVDVLE
370 380 390 400 410 420
380 390 400 410 420 430
pF1KB4 RTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFHHELVGFPGCVVTDGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFHHELVGFPGCVVTDGV
430 440 450 460 470 480
440 450 460 470 480 490
pF1KB4 VNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVVVDHASKLKLPWTSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVVVDHASKLKLPWTSRD
490 500 510 520 530 540
500 510 520 530
pF1KB4 AGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
:::::::::::::::::::::::::
XP_016 AGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
550 560 570
>>XP_016874630 (OMIM: 601873) PREDICTED: beta-1,4 N-acet (578 aa)
initn: 2215 init1: 2215 opt: 2215 Z-score: 2171.4 bits: 411.6 E(85289): 3.3e-114
Smith-Waterman score: 3368; 92.0% identity (92.0% similar) in 565 aa overlap (1-520:1-565)
10 20 30 40 50 60
pF1KB4 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
250 260 270 280 290 300
310 320 330
pF1KB4 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGK--------------------------
::::::::::::::::::::::::::::::::::
XP_016 RFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKLLAFRKHSKVWRRIQAEKGRGRERKV
310 320 330 340 350 360
340 350 360 370
pF1KB4 -------------------GWFAGRNLAVSQVTTKYVLWVDDDFVFTARTRLERLVDVLE
:::::::::::::::::::::::::::::::::::::::::
XP_016 AEGHVLFLQPPQPHTPFCQGWFAGRNLAVSQVTTKYVLWVDDDFVFTARTRLERLVDVLE
370 380 390 400 410 420
380 390 400 410 420 430
pF1KB4 RTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFHHELVGFPGCVVTDGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFHHELVGFPGCVVTDGV
430 440 450 460 470 480
440 450 460 470 480 490
pF1KB4 VNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVVVDHASKLKLPWTSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVVVDHASKLKLPWTSRD
490 500 510 520 530 540
500 510 520 530
pF1KB4 AGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
:::::::::::::::::::::::::
XP_016 AGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
550 560 570
>>NP_001263398 (OMIM: 601873) beta-1,4 N-acetylgalactosa (328 aa)
initn: 1590 init1: 1568 opt: 1568 Z-score: 1542.0 bits: 294.3 E(85289): 3.8e-79
Smith-Waterman score: 1568; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB4 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHIPVRIKEQVVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFQAFLSRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TASLGTWDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTGAR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 STEGHEAAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIR
NP_001 PGWRDGQAGQTEKNQKGWSGQMAEGMGGIWAMARAVQPHNGCFNWTSRARGRKGAFVHLG
250 260 270 280 290 300
>>XP_016879662 (OMIM: 111730) PREDICTED: beta-1,4 N-acet (480 aa)
initn: 1078 init1: 510 opt: 1189 Z-score: 1168.9 bits: 225.8 E(85289): 2.3e-58
Smith-Waterman score: 1261; 44.5% identity (69.0% similar) in 494 aa overlap (45-529:13-478)
20 30 40 50 60 70
pF1KB4 LACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRYAHIPVRIKEQVVGL
::. :::: .: : .. . .:.. .:
XP_016 MFGSMFLQAVFSSPK-PELP--SPAPGVQKLKLLPEERLRNL
10 20 30
80 90 100 110 120
pF1KB4 LA----W----NNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQEFQAFL
.. : :.:.::.. :. . .. :. ..: :..: :. ::. :
XP_016 FSYDGIWLFPKNQCKCEAN---------KEQGGYNFQDAYGQSDLPAVKARRQAEFEHFQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB4 SRSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNLTASLGT
: : :.. : :. ::..::::.::... .:::.... .. ::.:.:::::::
XP_016 RREGLPRPLPLLVQPNLPFGYPVHGVEVMPLHTVPIPGLQFEGPDAP-VYEVTLTASLGT
100 110 120 130 140
190 200 210 220 230 240
pF1KB4 WDVAGEVTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRFSTEGHE
.. ..: .. :.:: .: . . :. :: :::.: .:: . .: : . ...
XP_016 LNTLADVPDSVVQGRGQKQLIISTSDRKLLKFILQHVTYTSTGYQHQKVDIVSLESRSSV
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB4 AAFTIRIRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIRRFYPTV
: : . :::: :.:: :: :. : ::::::::::: .: .. :::..:: .
XP_016 AKFPVTIRHPVIPKLYDPG--PERKLRN---LVTIATKTFLRPHKLMIMLRSIREYYPDL
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB4 TVVIADDSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFVFTARTR
::..::::.:: ... .::.: ::::::::::::::.:::::::::::::::.:. .:.
XP_016 TVIVADDSQKPLEIKDNHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFNEETK
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB4 LERLVDVLERTPLDLVGGAVREISGFATTYRQLL-SVEPGAPGLGNCLRQRRGFHHELVG
.: ::::::.: ::.:::.: : . .. :: . : :: ::..: :: . : :
XP_016 IEVLVDVLEKTELDVVGGSVL---GNVFQFKLLLEQSENGA-----CLHKRMGFFQPLDG
330 340 350 360 370
430 440 450 460 470 480
pF1KB4 FPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVVVDHAS
::.::::.::::::::.:.....:::::::.:::: :::.::::.: :::: .:.. : :
XP_016 FPSCVVTSGVVNFFLAHTERLQRVGFDPRLQRVAHSEFFIDGLGTLLVGSCPEVIIGHQS
380 390 400 410 420 430
490 500 510 520 530
pF1KB4 KLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ
. . . : .:: :: ..: . :. : : .::..:::
XP_016 RSPVVDSELAALEKTYNTYR-SNTLTRVQF-KLALHYFKNHLQCAA
440 450 460 470 480
533 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:37:02 2016 done: Mon Nov 7 20:37:04 2016
Total Scan time: 9.920 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]