Result of FASTA (ccds) for
pFN21AB4262
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4262, 177 aa
1>>>pF1KB4262 177 - 177 aa - 177 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4198+/-0.000701; mu= 12.7972+/- 0.043
mean_var=75.2379+/-15.283, 0's: 0 Z-trim(111.3): 45 B-trim: 416 in 1/49
Lambda= 0.147862
statistics sampled from 12227 (12275) to 12227 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.377), width: 16
Scan time: 1.910
The best scores are: opt bits E(32554)
CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17 ( 177) 1225 269.8 6.3e-73
CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17 ( 177) 1225 269.8 6.3e-73
CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17 ( 95) 575 130.9 2.1e-31
CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17 ( 95) 575 130.9 2.1e-31
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 ( 88) 573 130.5 2.6e-31
CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17 ( 141) 574 130.8 3.3e-31
CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17 ( 125) 564 128.7 1.3e-30
CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17 ( 125) 564 128.7 1.3e-30
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 433 100.8 4.6e-22
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 430 100.2 7.2e-22
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 397 93.2 9.4e-20
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 394 92.5 1.5e-19
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 362 85.7 1.6e-17
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 344 81.8 2.4e-16
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 298 72.4 5.2e-13
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 298 72.4 5.4e-13
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 298 72.4 5.4e-13
>>CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17 (177 aa)
initn: 1225 init1: 1225 opt: 1225 Z-score: 1422.8 bits: 269.8 E(32554): 6.3e-73
Smith-Waterman score: 1225; 99.4% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NTFGVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
70 80 90 100 110 120
130 140 150 160 170
pF1KB4 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
130 140 150 160 170
>>CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17 (177 aa)
initn: 1225 init1: 1225 opt: 1225 Z-score: 1422.8 bits: 269.8 E(32554): 6.3e-73
Smith-Waterman score: 1225; 99.4% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NTFGVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NTFAVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
70 80 90 100 110 120
130 140 150 160 170
pF1KB4 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
130 140 150 160 170
>>CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17 (95 aa)
initn: 575 init1: 575 opt: 575 Z-score: 677.3 bits: 130.9 E(32554): 2.1e-31
Smith-Waterman score: 575; 93.6% identity (97.9% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KB4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NTFGVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
:::.::::::::::::::::::::::.:.: . :
CCDS82 NTFAVWDVGSHFKIRPLWQHFFQNTKAAHSQSLTS
70 80 90
130 140 150 160 170
pF1KB4 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
>>CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17 (95 aa)
initn: 575 init1: 575 opt: 575 Z-score: 677.3 bits: 130.9 E(32554): 2.1e-31
Smith-Waterman score: 575; 93.6% identity (97.9% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KB4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NTFGVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
:::.::::::::::::::::::::::.:.: . :
CCDS82 NTFAVWDVGSHFKIRPLWQHFFQNTKAAHSQSLTS
70 80 90
130 140 150 160 170
pF1KB4 SHPFLPHSSRCAGSGGQLDSILPHQSPAWGPWGCKDLSSGFPSFLTSSILWKSAVVK
>>CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 (88 aa)
initn: 573 init1: 573 opt: 573 Z-score: 675.5 bits: 130.5 E(32554): 2.6e-31
Smith-Waterman score: 573; 97.7% identity (100.0% similar) in 88 aa overlap (1-88:1-88)
10 20 30 40 50 60
pF1KB4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NTFGVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
:::.:::::::::::::::::::::::.
CCDS74 NTFAVWDVGSHFKIRPLWQHFFQNTKGS
70 80
>>CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17 (141 aa)
initn: 574 init1: 574 opt: 574 Z-score: 673.7 bits: 130.8 E(32554): 3.3e-31
Smith-Waterman score: 574; 96.7% identity (98.9% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KB4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NTFGVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
:::.:::::::::::::::::::::::. :
CCDS74 NTFAVWDVGSHFKIRPLWQHFFQNTKGSCSIDQAGVQWRDLGSLQRPLPKLRFVSHTSPH
70 80 90 100 110 120
>>CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17 (125 aa)
initn: 564 init1: 564 opt: 564 Z-score: 662.9 bits: 128.7 E(32554): 1.3e-30
Smith-Waterman score: 564; 98.8% identity (100.0% similar) in 86 aa overlap (1-86:1-86)
10 20 30 40 50 60
pF1KB4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NTFGVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
:::.::::::::::::::::::::::
CCDS45 NTFAVWDVGSHFKIRPLWQHFFQNTKELSASQFAQFIKKLCGVTGTNDEASPGSLTSYPS
70 80 90 100 110 120
>>CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17 (125 aa)
initn: 564 init1: 564 opt: 564 Z-score: 662.9 bits: 128.7 E(32554): 1.3e-30
Smith-Waterman score: 564; 98.8% identity (100.0% similar) in 86 aa overlap (1-86:1-86)
10 20 30 40 50 60
pF1KB4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NTFGVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
:::.::::::::::::::::::::::
CCDS54 NTFAVWDVGSHFKIRPLWQHFFQNTKELSASQFAQFIKKLCGVTGTNDEASPGSLTSYPS
70 80 90 100 110 120
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 450 init1: 433 opt: 433 Z-score: 509.6 bits: 100.8 E(32554): 4.6e-22
Smith-Waterman score: 433; 72.4% identity (92.0% similar) in 87 aa overlap (1-87:1-87)
10 20 30 40 50 60
pF1KB4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::: .:::.:.:::.::::...::.:::::::::::::: : ..::.:: ::::::::
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NTFGVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
.: :::::.. ::::::.:.::::.:
CCDS15 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 447 init1: 430 opt: 430 Z-score: 506.1 bits: 100.2 E(32554): 7.2e-22
Smith-Waterman score: 430; 72.4% identity (92.0% similar) in 87 aa overlap (1-87:1-87)
10 20 30 40 50 60
pF1KB4 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKN
::::: .:.:::.:::.::::...::.:::::::::::::: : ..::.:: ::::::::
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NTFGVWDVGSHFKIRPLWQHFFQNTKGARSPGSTHQGSLASGVLPIKCSHVEFGMWKGGR
.: :::::.. ::::::.:.::::.:
CCDS87 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
177 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 14:42:53 2016 done: Mon Nov 7 14:42:53 2016
Total Scan time: 1.910 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]