Result of FASTA (ccds) for
pFN21AB3073
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3073, 132 aa
1>>>pF1KB3073 132 - 132 aa - 132 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8403+/-0.000931; mu= 13.1811+/- 0.056
mean_var=56.8482+/-11.291, 0's: 0 Z-trim(103.5): 19 B-trim: 0 in 0/51
Lambda= 0.170105
statistics sampled from 7442 (7461) to 7442 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.229), width: 16
Scan time: 1.530
The best scores are: opt bits E(32554)
CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 ( 132) 860 219.1 6.4e-58
CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 ( 166) 759 194.3 2.3e-50
CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 ( 133) 599 155.0 1.2e-38
CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 ( 132) 512 133.7 3.3e-32
CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 ( 132) 505 131.9 1.1e-31
CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 ( 140) 435 114.8 1.7e-26
CCDS6228.1 FABP5 gene_id:2171|Hs108|chr8 ( 135) 397 105.4 1.1e-23
CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 ( 138) 335 90.2 4.1e-19
CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 ( 137) 326 88.0 1.9e-18
CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 ( 197) 324 87.6 3.5e-18
CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 ( 134) 307 83.4 4.7e-17
CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 ( 134) 301 81.9 1.3e-16
CCDS3712.1 FABP2 gene_id:2169|Hs108|chr4 ( 132) 285 78.0 1.9e-15
CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 ( 153) 263 72.6 9.2e-14
CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 ( 157) 260 71.9 1.6e-13
CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 ( 135) 238 66.4 5.9e-12
>>CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 (132 aa)
initn: 860 init1: 860 opt: 860 Z-score: 1153.3 bits: 219.1 E(32554): 6.4e-58
Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
::::::::::::
CCDS51 GDVVAVRHYEKA
130
>>CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 (166 aa)
initn: 759 init1: 759 opt: 759 Z-score: 1017.8 bits: 194.3 E(32554): 2.3e-50
Smith-Waterman score: 759; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
CCDS83 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
130 140 150 160
>>CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 (133 aa)
initn: 599 init1: 599 opt: 599 Z-score: 807.1 bits: 155.0 E(32554): 1.2e-38
Smith-Waterman score: 599; 67.2% identity (90.8% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: :::::
CCDS34 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
:::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::...:::
CCDS34 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
: .: .: :::
CCDS34 GTAVCTRTYEKEA
130
>>CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 (132 aa)
initn: 512 init1: 512 opt: 512 Z-score: 691.7 bits: 133.7 E(32554): 3.3e-32
Smith-Waterman score: 512; 59.5% identity (85.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
: . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: :::::
CCDS62 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
:::::.::.::.:::::.:. ::.:.:. .: ..:.::::::.. :.. .:::: .
CCDS62 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
:: .: :::
CCDS62 KGVVCTRIYEKV
130
>>CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 (132 aa)
initn: 515 init1: 497 opt: 505 Z-score: 682.4 bits: 131.9 E(32554): 1.1e-31
Smith-Waterman score: 505; 56.8% identity (85.6% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
: .:: .::::..:.:::.::: .:::::::.:....::..::: .:: ..:.. :::::
CCDS62 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
::::: ::.::::.:::::. ::...::: :::.:::::: :.. :. .: :.:. ..
CCDS62 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
:...: ::.:
CCDS62 KGVTSTRVYERA
130
>>CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 (140 aa)
initn: 435 init1: 435 opt: 435 Z-score: 589.2 bits: 114.8 E(32554): 1.7e-26
Smith-Waterman score: 435; 48.9% identity (78.6% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
:.. . .::: . .: ..::: ::.: :.:..: ..:::: :: .:: ..:.: : :::
CCDS47 MIDQLQGTWKSISCENSEDYMKELGIGRASRKLGRLAKPTVTISTDGDVITIKTKSIFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
.::::.:::::.: : .. :: :.:: ..:...: ::::::...:.. :::::. :
CCDS47 NEISFKLGEEFEEITPGGHKTKSKVTLDKESLIQVQDWDGKETTITRKLVDGKMVVESTV
70 80 90 100 110 120
130
pF1KB3 GDVVAVRHYEKA
..:. .: :::
CCDS47 NSVICTRTYEKVSSNSVSNS
130 140
>>CCDS6228.1 FABP5 gene_id:2171|Hs108|chr8 (135 aa)
initn: 397 init1: 397 opt: 397 Z-score: 539.1 bits: 105.4 E(32554): 1.1e-23
Smith-Waterman score: 397; 45.4% identity (80.8% similar) in 130 aa overlap (2-131:4-133)
10 20 30 40 50
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF
:. . . :.:..:..:::::: ::::.: :..: ..:: ::. .: ...:.: ::.
CCDS62 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL
:.:..: :::.:.::::: :. ..: .. ::. :.:::::....:..::::.:.
CCDS62 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
70 80 90 100 110 120
120 130
pF1KB3 TFGDVVAVRHYEKA
....:. .: :::
CCDS62 VMNNVTCTRIYEKVE
130
>>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 (138 aa)
initn: 302 init1: 179 opt: 335 Z-score: 456.7 bits: 90.2 E(32554): 4.1e-19
Smith-Waterman score: 335; 43.2% identity (75.0% similar) in 132 aa overlap (5-129:4-135)
10 20 30 40 50
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQ--VGNVTKPTVIISQEGDKVVIRTLSTF
: ..::. :.::.: .:.:::. :. :. ..::.: :.:::: :.: .:
CCDS11 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 KNTEISFQLGEEFDETTADDRNCKSVVSLDGD-KLVHIQKW---DGKETNFVREI-KDGK
..:::.:..::::.: :.: : :::.:. ... :.: :: .: .:...::. .::.
CCDS11 RTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGE
60 70 80 90 100 110
120 130
pF1KB3 MVMTLTFGDVVAVRHYEKA
...:.: ::: .: :
CCDS11 LILTMTADDVVCTRVYVRE
120 130
>>CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 (137 aa)
initn: 349 init1: 173 opt: 326 Z-score: 444.8 bits: 88.0 E(32554): 1.9e-18
Smith-Waterman score: 326; 38.9% identity (72.5% similar) in 131 aa overlap (5-129:4-134)
10 20 30 40 50
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVG--NVTKPTVIISQEGDKVVIRTLSTF
: .:::. .:.:::: .:::::. :.:. ..:: : : :.::. :.: .:
CCDS10 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH----IQKWDGKETNFVREIKDGKM
..:::.:..:: :.: :.: :.:.:... .... .: . . :: .: ..::. . ..
CCDS10 RTTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDEL
60 70 80 90 100 110
120 130
pF1KB3 VMTLTFGDVVAVRHYEKA
..:. ::: .: :
CCDS10 ILTFGADDVVCTRIYVRE
120 130
>>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 (197 aa)
initn: 271 init1: 231 opt: 324 Z-score: 439.8 bits: 87.6 E(32554): 3.5e-18
Smith-Waterman score: 324; 39.5% identity (70.5% similar) in 129 aa overlap (5-131:67-195)
10 20 30
pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVG
: . ::. ..::.::..:: :. : :...
CCDS31 STGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVALRKIA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB3 NVTKPTVIISQEGDKVVIRTLSTFKNTEISFQLGEEFDE--TTADDRNCKSVVSLDGDKL
:. :: : :.::...:::::::.: ..::.:.::.: : :::.: ..:: :::::
CCDS31 NLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKL
100 110 120 130 140 150
100 110 120 130
pF1KB3 VHIQKWDGKETNFVREIKDGKMVMTLTFGDVVAVRHYEKA
.:: . . .... :. .. . . :: . ..:
CCDS31 QCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
160 170 180 190
132 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:42:55 2016 done: Mon Nov 7 01:42:55 2016
Total Scan time: 1.530 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]