FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3035, 621 aa
  1>>>pF1KB3035 621 - 621 aa - 621 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1784+/-0.000916; mu= 3.4959+/- 0.055
 mean_var=237.2497+/-48.457, 0's: 0 Z-trim(113.8): 21  B-trim: 166 in 1/53
 Lambda= 0.083267
 statistics sampled from 14377 (14395) to 14377 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.442), width:  16
 Scan time:  3.480

The best scores are:                                      opt bits E(32554)
CCDS12380.1 ELL gene_id:8178|Hs108|chr19           ( 621) 4178 515.0 1.2e-145
CCDS4080.1 ELL2 gene_id:22936|Hs108|chr5           ( 640) 1298 169.0 1.7e-41


>>CCDS12380.1 ELL gene_id:8178|Hs108|chr19                (621 aa)
 initn: 4178 init1: 4178 opt: 4178  Z-score: 2728.2  bits: 515.0 E(32554): 1.2e-145
Smith-Waterman score: 4178; 100.0% identity (100.0% similar) in 621 aa overlap (1-621:1-621)

               10        20        30        40        50        60
pF1KB3 MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIRFQGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIRFQGSQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 GHISIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQDKITV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GHISIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQDKITV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 CATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPSRKRAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPSRKRAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 PINLASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PINLASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 ALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQPQSTGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQPQSTGS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 LLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGKLGVPN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GREALLPTPGPPASTDTLSSSTHLPPRLEPPRAHDPLADVSNDLGHSGRDCEHGEAAAPA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 PTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHAT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 PGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 ARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHS
              550       560       570       580       590       600

              610       620 
pF1KB3 KLAHIKRLIAEYDQRQLQAWP
       :::::::::::::::::::::
CCDS12 KLAHIKRLIAEYDQRQLQAWP
              610       620 

>>CCDS4080.1 ELL2 gene_id:22936|Hs108|chr5                (640 aa)
 initn: 1487 init1: 688 opt: 1298  Z-score: 858.3  bits: 169.0 E(32554): 1.7e-41
Smith-Waterman score: 1883; 47.9% identity (73.7% similar) in 643 aa overlap (4-620:9-639)

                    10        20        30        40        50     
pF1KB3      MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIR
               :.:.. :::::::... ....:.:::::..:.::.:.:..... . .::::.
CCDS40 MAAGGTGGLREEQRYGLSCGRLGQ-DNITVLHVKLTETAIRALETYQSHKNLIPFRPSIQ
               10        20         30        40        50         

          60        70        80        90       100       110     
pF1KB3 FQGSQGHISIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQ
       ::: .: ..::. :   :...:.:::::.:.::::::::::::  :: :  .:.::: ::
CCDS40 FQGLHGLVKIPKNDPLNEVHNFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQ
      60        70        80        90       100       110         

         120       130       140       150       160       170     
pF1KB3 DKITVCATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPS
       ::::::::.:::: .:. :.:::::.:.::. ::: :: :.::.::.::   ...:.:: 
CCDS40 DKITVCATNDSYQMTRERMTQAEEESRNRSTKVIKPGGPYVGKRVQIRKAPQAVSDTVPE
     120       130       140       150       160       170         

         180       190       200       210       220       230     
pF1KB3 RKRATPINLASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLT
       :::.::.: :..:::. .:     : .::::.::::.:::::. :.: ::: ::::::..
CCDS40 RKRSTPMNPANTIRKTHSS-----STISQRPYRDRVIHLLALKAYKKPELLARLQKDGVN
     180       190            200       210       220       230    

         240       250       260       270       280       290     
pF1KB3 QADKDALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQP
       : ::..: ..::::::...:: . ::.: ..:..:.::::::: :.. :. :: :::   
CCDS40 QKDKNSLGAILQQVANLNSKDLSYTLKDYVFKELQRDWPGYSEIDRRSLESVLSRKLNPS
          240       250       260       270       280       290    

         300       310       320       330       340       350     
pF1KB3 QSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGK
       :...   :   . ::      ..: :::::   .::::: ::: ::::.:.:. :..::.
CCDS40 QNAA---GTSRSESPVCSSRDAVSSPQKRLLDSEFIDPLMNKKARISHLTNRVPPTLNGH
             300       310       320       330       340       350 

         360       370           380       390               400   
pF1KB3 LGVPNGREALLPTPGPPAS----TDTLSSSTHLPPRLEPPRAHD--------PLADVSND
       :. :.....    : :::.    :     ::.::   .::.  .        : .  ..:
CCDS40 LN-PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPIS-HPPQIVNSNSNSPSTPEGRGTQD
              360       370       380        390       400         

              410         420          430       440       450     
pF1KB3 L---GHSGRDC--EHGEAAAPAPTVRLGLP---LLTDCAQPSRPHGSPSRSKPKKKSKKH
       :   . :  :   :  .    . :    ::   .:  : .: . . : :..: :::::::
CCDS40 LPVDSFSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKH
     410       420       430       440       450       460         

         460             470       480       490       500         
pF1KB3 KDKERAAE------DKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSSVPTSTSETPDY
       :.:..  .      .. . .:      .. . ..: .. :..  :..:  :..  : :::
CCDS40 KEKDQIKKHDIETIEEKEEDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAI-ELPDY
     470       480       490       500       510       520         

     510       520       530       540       550       560         
pF1KB3 LLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQGSEEYET
       :.:: :: : ::::.::.::::::.::: ::::.: ..::: .:::: ..:: ::.::..
CCDS40 LIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQN
      530       540       550       560       570       580        

     570       580       590       600       610       620 
pF1KB3 TRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP
       .. ..::::.:::... :: .::.::::::.:::::::::.:.::.: ..: 
CCDS40 VHEEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
      590       600       610       620       630       640




621 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:16:34 2016 done: Tue Nov  8 03:16:34 2016
 Total Scan time:  3.480 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]