Result of FASTA (ccds) for
pFN21AB3007
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3007, 1249 aa
1>>>pF1KB3007 1249 - 1249 aa - 1249 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0510+/-0.00101; mu= 18.5444+/- 0.061
mean_var=73.3371+/-14.650, 0's: 0 Z-trim(104.2): 20 B-trim: 0 in 0/51
Lambda= 0.149766
statistics sampled from 7772 (7778) to 7772 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.239), width: 16
Scan time: 2.900
The best scores are: opt bits E(32554)
CCDS9502.1 TPP2 gene_id:7174|Hs108|chr13 (1249) 8400 1825.1 0
CCDS81777.1 TPP2 gene_id:7174|Hs108|chr13 (1262) 6621 1440.7 0
>>CCDS9502.1 TPP2 gene_id:7174|Hs108|chr13 (1249 aa)
initn: 8400 init1: 8400 opt: 8400 Z-score: 9798.0 bits: 1825.1 E(32554): 0
Smith-Waterman score: 8400; 100.0% identity (100.0% similar) in 1249 aa overlap (1-1249:1-1249)
10 20 30 40 50 60
pF1KB3 MATAATEEPFPFHGLLPKKETGAASFLCRYPEYDGRGVLIAVLDTGVDPGAPGMQVTTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MATAATEEPFPFHGLLPKKETGAASFLCRYPEYDGRGVLIAVLDTGVDPGAPGMQVTTDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KPKIVDIIDTTGSGDVNTATEVEPKDGEIVGLSGRVLKIPASWTNPSGKYHIGIKNGYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KPKIVDIIDTTGSGDVNTATEVEPKDGEIVGLSGRVLKIPASWTNPSGKYHIGIKNGYDF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YPKALKERIQKERKEKIWDPVHRVALAEACRKQEEFDVANNGSSQANKLIKEELQSQVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 YPKALKERIQKERKEKIWDPVHRVALAEACRKQEEFDVANNGSSQANKLIKEELQSQVEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LNSFEKKYSDPGPVYDCLVWHDGEVWRACIDSNEDGDLSKSTVLRNYKEAQEYGSFGTAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LNSFEKKYSDPGPVYDCLVWHDGEVWRACIDSNEDGDLSKSTVLRNYKEAQEYGSFGTAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSIKIGDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSIKIGDTR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 LSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVINEAVWKHNIIYVSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVINEAVWKHNIIYVSSA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 GNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 GNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGAL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 GVSISAPGGAIASVPNWTLRGTQLMNGTSMSSPNACGGIALILSGLKANNIDYTVHSVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 GVSISAPGGAIASVPNWTLRGTQLMNGTSMSSPNACGGIALILSGLKANNIDYTVHSVRR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 ALENTAVKADNIEVFAQGHGIIQVDKAYDYLVQNTSFANKLGFTVTVGNNRGIYLRDPVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 ALENTAVKADNIEVFAQGHGIIQVDKAYDYLVQNTSFANKLGFTVTVGNNRGIYLRDPVQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 VAAPSDHGVGIEPVFPENTENSEKISLQLHLALTSNSSWVQCPSHLELMNQCRHINIRVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 VAAPSDHGVGIEPVFPENTENSEKISLQLHLALTSNSSWVQCPSHLELMNQCRHINIRVD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 PRGLREGLHYTEVCGYDIASPNAGPLFRVPITAVIAAKVNESSHYDLAFTDVHFKPGQIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 PRGLREGLHYTEVCGYDIASPNAGPLFRVPITAVIAAKVNESSHYDLAFTDVHFKPGQIR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 RHFIEVPEGATWAEVTVCSCSSEVSAKFVLHAVQLVKQRAYRSHEFYKFCSLPEKGTLTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 RHFIEVPEGATWAEVTVCSCSSEVSAKFVLHAVQLVKQRAYRSHEFYKFCSLPEKGTLTE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 AFPVLGGKAIEFCIARWWASLSDVNIDYTISFHGIVCTAPQLNIHASEGINRFDVQSSLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 AFPVLGGKAIEFCIARWWASLSDVNIDYTISFHGIVCTAPQLNIHASEGINRFDVQSSLK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 YEDLAPCITLKNWVQTLRPVSAKTKPLGSRDVLPNNRQLYEMVLTYNFHQPKSGEVTPSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 YEDLAPCITLKNWVQTLRPVSAKTKPLGSRDVLPNNRQLYEMVLTYNFHQPKSGEVTPSC
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 PLLCELLYESEFDSQLWIIFDQNKRQMGSGDAYPHQYSLKLEKGDYTIRLQIRHEQISDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 PLLCELLYESEFDSQLWIIFDQNKRQMGSGDAYPHQYSLKLEKGDYTIRLQIRHEQISDL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB3 ERLKDLPFIVSHRLSNTLSLDIHENHSFALLGKKKSSNLTLPPKYNQPFFVTSLPDDKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 ERLKDLPFIVSHRLSNTLSLDIHENHSFALLGKKKSSNLTLPPKYNQPFFVTSLPDDKIP
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB3 KGAGPGCYLAGSLTLSKTELGKKADVIPVHYYLIPPPTKTKNGSKDKEKDSEKEKDLKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KGAGPGCYLAGSLTLSKTELGKKADVIPVHYYLIPPPTKTKNGSKDKEKDSEKEKDLKEE
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB3 FTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEKERMKRLNEIVDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 FTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEKERMKRLNEIVDAA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB3 NAVISHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRKGCALADHLLHTQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 NAVISHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRKGCALADHLLHTQA
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB3 QDGAISTDAEGKEEEGESPLDSLAETFWETTKWTDLFDNKVLTFAYKHALVNKMYGRGLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 QDGAISTDAEGKEEEGESPLDSLAETFWETTKWTDLFDNKVLTFAYKHALVNKMYGRGLK
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240
pF1KB3 FATKLVEEKPTKENWKNCIQLMKLLGWTHCASFTENWLPIMYPPDYCVF
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 FATKLVEEKPTKENWKNCIQLMKLLGWTHCASFTENWLPIMYPPDYCVF
1210 1220 1230 1240
>>CCDS81777.1 TPP2 gene_id:7174|Hs108|chr13 (1262 aa)
initn: 6616 init1: 6616 opt: 6621 Z-score: 7720.5 bits: 1440.7 E(32554): 0
Smith-Waterman score: 8364; 99.0% identity (99.0% similar) in 1262 aa overlap (1-1249:1-1262)
10 20 30 40 50 60
pF1KB3 MATAATEEPFPFHGLLPKKETGAASFLCRYPEYDGRGVLIAVLDTGVDPGAPGMQVTTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MATAATEEPFPFHGLLPKKETGAASFLCRYPEYDGRGVLIAVLDTGVDPGAPGMQVTTDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KPKIVDIIDTTGSGDVNTATEVEPKDGEIVGLSGRVLKIPASWTNPSGKYHIGIKNGYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KPKIVDIIDTTGSGDVNTATEVEPKDGEIVGLSGRVLKIPASWTNPSGKYHIGIKNGYDF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 YPKALKERIQKERKEKIWDPVHRVALAEACRKQEEFDVANNGSSQANKLIKEELQSQVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 YPKALKERIQKERKEKIWDPVHRVALAEACRKQEEFDVANNGSSQANKLIKEELQSQVEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LNSFEKKYSDPGPVYDCLVWHDGEVWRACIDSNEDGDLSKSTVLRNYKEAQEYGSFGTAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LNSFEKKYSDPGPVYDCLVWHDGEVWRACIDSNEDGDLSKSTVLRNYKEAQEYGSFGTAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSIKIGDTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MLNYSVNIYDDGNLLSIVTSGGAHGTHVASIAAGHFPEEPERNGVAPGAQILSIKIGDTR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 LSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVINEAVWKHNIIYVSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LSTMETGTGLIRAMIEVINHKCDLVNYSYGEATHWPNSGRICEVINEAVWKHNIIYVSSA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 GNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GNNGPCLSTVGCPGGTTSSVIGVGAYVSPDMMVAEYSLREKLPANQYTWSSRGPSADGAL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 GVSISAPGGAIASVPNWTLRGTQLMNGTSMSSPNACGGIALILSGLKANNIDYTVHSVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GVSISAPGGAIASVPNWTLRGTQLMNGTSMSSPNACGGIALILSGLKANNIDYTVHSVRR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 ALENTAVKADNIEVFAQGHGIIQVDKAYDYLVQNTSFANKLGFTVTVGNNRGIYLRDPVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ALENTAVKADNIEVFAQGHGIIQVDKAYDYLVQNTSFANKLGFTVTVGNNRGIYLRDPVQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 VAAPSDHGVGIEPVFPENTENSEKISLQLHLALTSNSSWVQCPSHLELMNQCRHINIRVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VAAPSDHGVGIEPVFPENTENSEKISLQLHLALTSNSSWVQCPSHLELMNQCRHINIRVD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 PRGLREGLHYTEVCGYDIASPNAGPLFRVPITAVIAAKVNESSHYDLAFTDVHFKPGQIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PRGLREGLHYTEVCGYDIASPNAGPLFRVPITAVIAAKVNESSHYDLAFTDVHFKPGQIR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 RHFIEVPEGATWAEVTVCSCSSEVSAKFVLHAVQLVKQRAYRSHEFYKFCSLPEKGTLTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RHFIEVPEGATWAEVTVCSCSSEVSAKFVLHAVQLVKQRAYRSHEFYKFCSLPEKGTLTE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 AFPVLGGKAIEFCIARWWASLSDVNIDYTISFHGIVCTAPQLNIHASEGINRFDVQSSLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AFPVLGGKAIEFCIARWWASLSDVNIDYTISFHGIVCTAPQLNIHASEGINRFDVQSSLK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 YEDLAPCITLKNWVQTLRPVSAKTKPLGSRDVLPNNRQLYEMVLTYNFHQPKSGEVTPSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 YEDLAPCITLKNWVQTLRPVSAKTKPLGSRDVLPNNRQLYEMVLTYNFHQPKSGEVTPSC
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 PLLCELLYESEFDSQLWIIFDQNKRQMGSGDAYPHQYSLKLEKGDYTIRLQIRHEQISDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PLLCELLYESEFDSQLWIIFDQNKRQMGSGDAYPHQYSLKLEKGDYTIRLQIRHEQISDL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB3 ERLKDLPFIVSHRLSNTLSLDIHENHSFALLGKKKSSNLTLPPKYNQPFFVTSLPDDKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ERLKDLPFIVSHRLSNTLSLDIHENHSFALLGKKKSSNLTLPPKYNQPFFVTSLPDDKIP
910 920 930 940 950 960
970 980 990 1000
pF1KB3 KGAGPGCYLAGSLTLSKTELGKKA-------------DVIPVHYYLIPPPTKTKNGSKDK
:::::::::::::::::::::::: :::::::::::::::::::::::
CCDS81 KGAGPGCYLAGSLTLSKTELGKKAGQSAAKRQGKFKKDVIPVHYYLIPPPTKTKNGSKDK
970 980 990 1000 1010 1020
1010 1020 1030 1040 1050 1060
pF1KB3 EKDSEKEKDLKEEFTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EKDSEKEKDLKEEFTEALRDLKIQWMTKLDSSDIYNELKETYPNYLPLYVARLHQLDAEK
1030 1040 1050 1060 1070 1080
1070 1080 1090 1100 1110 1120
pF1KB3 ERMKRLNEIVDAANAVISHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ERMKRLNEIVDAANAVISHIDQTALAVYIAMKTDPRPDAATIKNDMDKQKSTLVDALCRK
1090 1100 1110 1120 1130 1140
1130 1140 1150 1160 1170 1180
pF1KB3 GCALADHLLHTQAQDGAISTDAEGKEEEGESPLDSLAETFWETTKWTDLFDNKVLTFAYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GCALADHLLHTQAQDGAISTDAEGKEEEGESPLDSLAETFWETTKWTDLFDNKVLTFAYK
1150 1160 1170 1180 1190 1200
1190 1200 1210 1220 1230 1240
pF1KB3 HALVNKMYGRGLKFATKLVEEKPTKENWKNCIQLMKLLGWTHCASFTENWLPIMYPPDYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HALVNKMYGRGLKFATKLVEEKPTKENWKNCIQLMKLLGWTHCASFTENWLPIMYPPDYC
1210 1220 1230 1240 1250 1260
pF1KB3 VF
::
CCDS81 VF
1249 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:00:25 2016 done: Tue Nov 8 07:00:25 2016
Total Scan time: 2.900 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]