Result of FASTA (omim) for
pFN21AB0985
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0985, 310 aa
1>>>pF1KB0985 310 - 310 aa - 310 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1304+/-0.000332; mu= 7.9905+/- 0.021
mean_var=290.2448+/-57.254, 0's: 0 Z-trim(125.3): 224 B-trim: 0 in 0/53
Lambda= 0.075282
statistics sampled from 48352 (48619) to 48352 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.57), width: 16
Scan time: 9.530
The best scores are: opt bits E(85289)
NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189) 314 46.1 6.7e-05
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 312 46.3 0.00012
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 308 45.7 0.00013
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 301 45.0 0.00025
NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 292 44.0 0.00047
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 289 43.5 0.00052
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 293 44.3 0.00058
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 290 43.8 0.00061
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 284 43.0 0.00078
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 284 43.0 0.00078
NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 284 43.2 0.00094
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 287 43.8 0.00099
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 281 42.8 0.0012
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 277 42.2 0.0013
XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 276 42.1 0.0013
NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 276 42.2 0.0015
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 276 42.2 0.0015
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 276 42.3 0.0017
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 276 42.3 0.0017
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 276 42.3 0.0017
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 276 42.4 0.0019
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 276 42.4 0.0019
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 276 42.4 0.0019
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 276 42.4 0.0019
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 276 42.4 0.0019
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 276 42.4 0.0019
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 271 41.5 0.0019
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 273 41.9 0.002
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 273 42.0 0.0021
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 276 42.6 0.0023
XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 267 41.0 0.0024
XP_016868632 (OMIM: 610772) PREDICTED: homeobox pr ( 265) 269 41.4 0.0024
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 269 41.4 0.0025
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 272 42.0 0.0026
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 268 41.4 0.003
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 266 41.1 0.0031
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 266 41.1 0.0031
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 265 41.0 0.0033
XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 262 40.5 0.0035
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 264 40.9 0.0036
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 41.6 0.0036
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 41.6 0.0036
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 41.6 0.0036
>>NP_001158727 (OMIM: 142994,176450) motor neuron and pa (189 aa)
initn: 408 init1: 271 opt: 314 Z-score: 209.0 bits: 46.1 E(85289): 6.7e-05
Smith-Waterman score: 314; 44.4% identity (64.4% similar) in 135 aa overlap (134-259:2-128)
110 120 130 140 150 160
pF1KB0 RERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPR-RRRLEPNCAK
:: . : . :: :. . . . : .:
NP_001 MGGLSTVGACPGILGAQQAQAQSNLLGKC--
10 20
170 180 190 200 210 220
pF1KB0 PRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQN
:: ::::: .::. ::..:. ..::: .:...: :: :::::::::::::: :::...
NP_001 -RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSK
30 40 50 60 70 80
230 240 250 260 270
pF1KB0 PGADGAAQVGGGAPQPGAAGGGGGGGSGGS--PG------PPGTGALHFQTFPSYSAANV
. . ::: :::::.:.::. :: ::. :
NP_001 KAKEQAAQ-----EAEKQKGGGGGAGKGGAEEPGAEELLGPPAPGDKGSGRRLRDLRDSD
90 100 110 120 130 140
280 290 300 310
pF1KB0 LFPSAASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
NP_001 PEEDEDEDDEDHFPYSNGASVHAASSDCSSEDDSPPPRPSHQPAPQ
150 160 170 180
>>NP_005506 (OMIM: 142994,176450) motor neuron and pancr (401 aa)
initn: 271 init1: 271 opt: 312 Z-score: 204.2 bits: 46.3 E(85289): 0.00012
Smith-Waterman score: 312; 35.6% identity (53.4% similar) in 208 aa overlap (71-259:143-340)
50 60 70 80 90
pF1KB0 PAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAG---QAS----PLEGSEAEEEE
: .: ::: ::. :. : :
NP_005 PHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAA
120 130 140 150 160 170
100 110 120 130 140
pF1KB0 DAEDPRRPRLRERAARLLPGLARSPDAP----AGALASGEPCEDGGGGPVRSPPGSPGSP
: ..: : .. . : : ::.. . . . .: . : :
NP_005 AALAGQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGMIL--PKMPDFN
180 190 200 210 220 230
150 160 170 180 190 200
pF1KB0 RPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKI
. : .: :: ::::: .::. ::..:. ..::: .:...: :: ::::::::
NP_005 SQAQSNLLGKC---RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKI
240 250 260 270 280
210 220 230 240 250 260
pF1KB0 WFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGS--PG------PPGTGAL
:::::: :::... . . ::: :::::.:.::. :: ::. :
NP_005 WFQNRRMKWKRSKKAKEQAAQ-----EAEKQKGGGGGAGKGGAEEPGAEELLGPPAPGDK
290 300 310 320 330 340
270 280 290 300 310
pF1KB0 HFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
NP_005 GSGRRLRDLRDSDPEEDEDEDDEDHFPYSNGASVHAASSDCSSEDDSPPPRPSHQPAPQ
350 360 370 380 390 400
>>NP_000200 (OMIM: 125853,260370,600733,606176,606392) p (283 aa)
initn: 302 init1: 223 opt: 308 Z-score: 203.5 bits: 45.7 E(85289): 0.00013
Smith-Waterman score: 311; 30.6% identity (50.3% similar) in 288 aa overlap (27-295:16-282)
10 20 30 40 50 60
pF1KB0 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
:: : :. :::. . . : . :..
NP_000 MNGEEQYYAATQLYKDPCAFQRG------PAPEFSASPPACLYMGRQPP
10 20 30 40
70 80 90 100 110 120
pF1KB0 SRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDA
: : : : . :.:: . : : :.:: .:... ::. :
NP_000 PPPP---HPFPGALG-ALEQGSPPDISPYEVPPLADDPAVAHLHHH----LPAQLALPHP
50 60 70 80 90
130 140 150 160
pF1KB0 PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNC-----------AKP---RRA
::: : .:. : :. : : . . . :.: .:.
NP_000 PAG------PFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRT
100 110 120 130 140
170 180 190 200 210 220
pF1KB0 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ-NPGA
:::.: ::. ::..: ..:.: .:..::. :.::: ..:::::::: ::::. .
NP_000 RTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKR
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB0 DGAAQVGGGA---PQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASF
:.. ::::. :. : .: . : :: ::. . : . . : :. ..
NP_000 GGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPGGAVP-PAAPVAAREGRLPPGLSAS
210 220 230 240 250 260
290 300 310
pF1KB0 PL-TAAAPGSPFAPFLGPSYLTPFYAPRL
: ...:: : :
NP_000 PQPSSVAPRRPQEPR
270 280
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 231 init1: 231 opt: 301 Z-score: 198.8 bits: 45.0 E(85289): 0.00025
Smith-Waterman score: 313; 30.1% identity (54.1% similar) in 259 aa overlap (28-279:76-319)
10 20 30 40 50
pF1KB0 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPA--VRPAPREARKSLAEVEA
:. . : :: . :: : .
NP_002 PAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYR
50 60 70 80 90 100
60 70 80 90 100 110
pF1KB0 GKDASSRDPVRQLETPDAAGPGAG-QASPLEGSEAEE--EEDAEDPRRPRLRERAARLLP
: . .: : . .: ::. : .:: . . . : : :: : .:: :
NP_002 GGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPR-RCEAAPATP
110 120 130 140 150 160
120 130 140 150 160 170
pF1KB0 GLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP--NCAKPRRARTAF
:. . .::: : .. : : . : : . . ..: : ..:.:.:::.
NP_002 GVPAGGSAPACPLLLADKSPLGLKG--KEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAY
170 180 190 200 210 220
180 190 200 210 220 230
pF1KB0 TYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQ
: .:.. ::..:. .:::. .:...: .: :.: :::::::::: ::::..
NP_002 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK-------
230 240 250 260 270
240 250 260 270 280 290
pF1KB0 VGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPG
:. .......:.: :: : . :.. : :... . ::.
NP_002 ----LPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPV-PSSI
280 290 300 310 320
300 310
pF1KB0 SPFAPFLGPSYLTPFYAPRL
>>NP_002439 (OMIM: 106600,142983,189500,608874) homeobox (303 aa)
initn: 305 init1: 234 opt: 292 Z-score: 193.8 bits: 44.0 E(85289): 0.00047
Smith-Waterman score: 309; 33.7% identity (51.2% similar) in 291 aa overlap (7-271:27-293)
10 20 30 40
pF1KB0 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVR
::: ::: . ... : . .: : :
NP_002 MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGA-DEE----GAKPKVS
10 20 30 40 50
50 60 70 80 90
pF1KB0 PA--PREARKSLAE-VEAGKDASSRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAED
:. : .. .:. . : :. : . .. ::: :.:.:: : .
NP_002 PSLLPFSVEALMADHRKPGAKESALAPSEGVQ---AAG---GSAQPL-GVPPGSLGAPDA
60 70 80 90 100
100 110 120 130 140 150
pF1KB0 PRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSP-PGSPG-SPRPRRRR
: :: . . :: . :. ::...: : : :.: :: :: : ::
NP_002 PSSPR--PLGHFSVGGLLKLPE---DALVKAESPEK----PERTPWMQSPRFSPPPARRL
110 120 130 140 150
160 170 180 190 200 210
pF1KB0 LEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIW
: :. :. :: :: ::.::: ::: .:::. :: ... ::::::::::::
NP_002 SPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIW
160 170 180 190 200 210
220 230 240 250
pF1KB0 FQNRRTKWKKQN----------------PGADGAAQVGGGAPQPGAAGGGGGGGSGGSPG
:::::.: :. . :.: : . :: :.:.....:.. :. :
NP_002 FQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PAAVAAAAGASLYGASG
220 230 240 250 260 270
260 270 280 290 300 310
pF1KB0 PPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
: .:: :.:
NP_002 PFQRAALPVAPVGLYTAHVGYSMYHLT
280 290 300
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 286 init1: 258 opt: 289 Z-score: 193.0 bits: 43.5 E(85289): 0.00052
Smith-Waterman score: 304; 38.8% identity (61.2% similar) in 165 aa overlap (112-251:87-247)
90 100 110 120 130
pF1KB0 SPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLA-RSP-DAPAGAL--ASGEPCEDGGGG
:::. :.: ::::: :. :: ...
NP_076 RAACTVQRYAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSS
60 70 80 90 100 110
140 150 160 170
pF1KB0 PVRSPP--GSPGSPRPRR------------RRLE-----PNCA--KPRRARTAFTYEQLV
: :: .: : : . :... :: : .:.:.:::.: .:..
NP_076 PP-PPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 ALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAP
::..:. .:::. .:...: .: :.: :.:::::::: ::::.. . . ::.:
NP_076 ELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAA-
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 QPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPF
:.::: : .::
NP_076 --GSAGGPPGRPNGGPRAL
240 250
>>XP_011523010 (OMIM: 142966) PREDICTED: homeobox protei (488 aa)
initn: 256 init1: 256 opt: 293 Z-score: 192.1 bits: 44.3 E(85289): 0.00058
Smith-Waterman score: 311; 30.0% identity (52.9% similar) in 280 aa overlap (40-301:120-386)
10 20 30 40 50 60
pF1KB0 KAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLE
: .: .: : : ... ..: .:.
XP_011 ASGPLPQLGGTLGGCWGLLRVERLGCGWLRRRSPSLGRGSGAW-QSAPARTQRPAARRCP
90 100 110 120 130 140
70 80 90 100 110 120
pF1KB0 TPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPA---GALA
:.. :. :: : :. : : : .:...: . .: .. .. .
XP_011 RPSGRPHRRGDLSPAARSGARCEYILCLPVLP---SSVAKIFPWMKESRQTSKLKNNSPG
150 160 170 180 190 200
130 140 150 160 170 180
pF1KB0 SGEPCEDGGGGPV---RSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFR
..: : :::: . :. :. . :. : .:::::.: ::: ::..:.
XP_011 TAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFH
210 220 230 240 250 260
190 200 210 220 230
pF1KB0 ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGA------PQ
.::: .:...: :.:.: :.:::::::: :.:: . : : :. .:: ::
XP_011 FNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK-DQKAKGLASSSGGPSPAGSPPQ
270 280 290 300 310 320
240 250 260 270 280 290
pF1KB0 PGAAGGGGGGG------SGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGS
: . .: .. : ::.::. : : ... .:: . :: . . .
XP_011 PMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYA--------LPSNYQPPLKGCGAPQ
330 340 350 360 370
300 310
pF1KB0 PFAPFLGPSYLTPFYAPRL
. : .: :
XP_011 KYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHH
380 390 400 410 420 430
>>NP_001092304 (OMIM: 603354) homeobox protein GBX-1 [Ho (363 aa)
initn: 238 init1: 238 opt: 290 Z-score: 191.8 bits: 43.8 E(85289): 0.00061
Smith-Waterman score: 292; 33.6% identity (53.2% similar) in 220 aa overlap (35-224:104-322)
10 20 30 40 50 60
pF1KB0 QDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDP
:::. : .: . :. :. :..
NP_001 APLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPP-DAFYGPQELAAAAAAAAATA
80 90 100 110 120 130
70 80 90 100 110
pF1KB0 VRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARL-LPGLARSPD----
.:. : . : .: . :. . : :.. : : : . : :
NP_001 ARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKL
140 150 160 170 180 190
120 130 140 150 160
pF1KB0 -APAGALASGEPCEDGGGGP------VRSPPGSPGS---PRPRRR--------RLEPNCA
: :: :..: :.:.:: . : :.::. :.:. . . : :
NP_001 EASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTA
200 210 220 230 240 250
170 180 190 200 210
pF1KB0 -------KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNR
: :: ::::: :::. ::..:. .:::. :: ..: .:.:.:.:::::::::
NP_001 GVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNR
260 270 280 290 300 310
220 230 240 250 260 270
pF1KB0 RTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANV
:.:::. . :
NP_001 RAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP
320 330 340 350 360
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 262 init1: 208 opt: 284 Z-score: 189.8 bits: 43.0 E(85289): 0.00078
Smith-Waterman score: 284; 33.0% identity (58.3% similar) in 206 aa overlap (64-265:63-249)
40 50 60 70 80 90
pF1KB0 AALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQA-SPLEGSEAEEE
: :: . ::: ... .: .... . :
NP_705 SPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPE
40 50 60 70 80 90
100 110 120 130 140 150
pF1KB0 EDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPV-RSPPGSPGSPRP
. : : : : : . :: .:: : ..: : .. . ..: : .
NP_705 ------KSQSLCEPAP--LSGASASP-SPAPP-ACSQPAPDHPSSAASKQPIVYPWMKKI
100 110 120 130 140
160 170 180 190 200
pF1KB0 RRRRLEPNC--AKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKI
. ..:: ..:.:.:::.: .:.. ::..:. .:::. .:...: :: :.: :.::
NP_705 HVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKI
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB0 WFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSY
:::::: ::::.. . .. .:: ::: : : . :::. : :.
NP_705 WFQNRRMKWKKDHRLPNTKVR---SAPPAGAAP------STLSAATPGTSEDHSQSATPP
210 220 230 240 250
270 280 290 300 310
pF1KB0 SAANVLFPSAASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
NP_705 EQQRAEDITRL
260
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 262 init1: 208 opt: 284 Z-score: 189.8 bits: 43.0 E(85289): 0.00078
Smith-Waterman score: 284; 33.0% identity (58.3% similar) in 206 aa overlap (64-265:63-249)
40 50 60 70 80 90
pF1KB0 AALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQA-SPLEGSEAEEE
: :: . ::: ... .: .... . :
NP_055 SPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPE
40 50 60 70 80 90
100 110 120 130 140 150
pF1KB0 EDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPV-RSPPGSPGSPRP
. : : : : : . :: .:: : ..: : .. . ..: : .
NP_055 ------KSQSLCEPAP--LSGASASP-SPAPP-ACSQPAPDHPSSAASKQPIVYPWMKKI
100 110 120 130 140
160 170 180 190 200
pF1KB0 RRRRLEPNC--AKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKI
. ..:: ..:.:.:::.: .:.. ::..:. .:::. .:...: :: :.: :.::
NP_055 HVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKI
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB0 WFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSY
:::::: ::::.. . .. .:: ::: : : . :::. : :.
NP_055 WFQNRRMKWKKDHRLPNTKVR---SAPPAGAAP------STLSAATPGTSEDHSQSATPP
210 220 230 240 250
270 280 290 300 310
pF1KB0 SAANVLFPSAASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
NP_055 EQQRAEDITRL
260
310 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:36:40 2016 done: Sun Nov 6 04:36:42 2016
Total Scan time: 9.530 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]