FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0944, 393 aa
  1>>>pF1KB0944 393 - 393 aa - 393 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1455+/-0.000351; mu= 1.9635+/- 0.022
 mean_var=289.4357+/-57.757, 0's: 0 Z-trim(124.5): 14  B-trim: 67 in 2/52
 Lambda= 0.075387
 statistics sampled from 46235 (46254) to 46235 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.542), width:  16
 Scan time:  7.410

The best scores are:                                      opt bits E(85289)
NP_001035047 (OMIM: 277300,605195,608681) mesoderm ( 397) 2813 318.7 1.5e-86
NP_061140 (OMIM: 608689) mesoderm posterior protei ( 268)  712 90.1 6.9e-18


>>NP_001035047 (OMIM: 277300,605195,608681) mesoderm pos  (397 aa)
 initn: 1596 init1: 1596 opt: 2813  Z-score: 1674.9  bits: 318.7 E(85289): 1.5e-86
Smith-Waterman score: 2813; 99.0% identity (99.0% similar) in 397 aa overlap (1-393:1-397)

               10        20        30        40        50        60
pF1KB0 MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ
              130       140       150       160       170       180

              190       200           210       220       230      
pF1KB0 GQGQGQGQGQGQGQGQGQGQG----RRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV
       :::::::::::::::::::::    :::::::::::::::::::::::::::::::::::
NP_001 GQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV
              190       200       210       220       230       240

        240       250       260       270       280       290      
pF1KB0 HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT
              250       260       270       280       290       300

        300       310       320       330       340       350      
pF1KB0 LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA
              310       320       330       340       350       360

        360       370       380       390   
pF1KB0 AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY
       :::::::::::::::::::::::::::::::::::::
NP_001 AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY
              370       380       390       

>>NP_061140 (OMIM: 608689) mesoderm posterior protein 1   (268 aa)
 initn: 842 init1: 619 opt: 712  Z-score: 442.1  bits: 90.1 E(85289): 6.9e-18
Smith-Waterman score: 802; 52.5% identity (63.2% similar) in 299 aa overlap (1-282:1-268)

                 10        20        30              40        50  
pF1KB0 MAQSP--PPQSLLGHDHWIFAQGWGWAGHWDST------SPASSSDSSGSCPCDGARGLP
       ::: :  :: :    . :... .:: . .   .      : .:: :: :: : :.   . 
NP_061 MAQ-PLCPPLS----ESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSP--VA
                10            20        30        40        50     

             60        70        80         90       100       110 
pF1KB0 QPQPPSCSSRAAEAAATTPRRARTGPAG-GQRQSASEREKLRMRTLARALHELRRFLPPS
       .:  :. . :  .: ..  : ::..  : :::::::::::::::::::::::::::::::
NP_061 SPARPG-TLRDPRAPSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPS
             60        70        80        90       100       110  

             120       130       140       150       160       170 
pF1KB0 LAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPA
       .::::::::::::::::::::::::::::::::::: : ::::::::: :::::::  ::
NP_061 VAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPA
            120       130       140       150       160       170  

             180       190       200       210       220       230 
pF1KB0 EAQTQAEGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPER
       . ::.....:::::.: :                ::::: : :::::: :::::.:::: 
NP_061 QMQTRTQAEGQGQGRGLG----------------LVSAVRAGASWGSPPACPGARAAPE-
            180       190                       200       210      

             240         250           260         270       280   
pF1KB0 LGRGVHDTDPWA--TPPYCPKIQ----SPPYSSQGTTSDASL--WTPPQGCPWTQSSPEP
               :: :  .   ::. :    :::         : :  : : .   :    :. 
NP_061 ------PRDPPALFAEAACPEGQAMEPSPPSPLLPGDVLALLETWMPLSPLEWLPEEPK 
               220       230       240       250       260         

           290       300       310       320       330       340   
pF1KB0 RNPPVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSA




393 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:48:12 2016 done: Sat Nov  5 22:48:13 2016
 Total Scan time:  7.410 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]