FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB0944, 393 aa 1>>>pF1KB0944 393 - 393 aa - 393 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.8341+/-0.000857; mu= 3.4972+/- 0.052 mean_var=253.2560+/-49.697, 0's: 0 Z-trim(117.0): 24 B-trim: 0 in 0/50 Lambda= 0.080592 statistics sampled from 17669 (17688) to 17669 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.543), width: 16 Scan time: 3.450 The best scores are: opt bits E(32554) CCDS42078.1 MESP2 gene_id:145873|Hs108|chr15 ( 397) 2813 339.5 3.3e-93 CCDS10355.1 MESP1 gene_id:55897|Hs108|chr15 ( 268) 712 95.0 8.5e-20 >>CCDS42078.1 MESP2 gene_id:145873|Hs108|chr15 (397 aa) initn: 1596 init1: 1596 opt: 2813 Z-score: 1787.0 bits: 339.5 E(32554): 3.3e-93 Smith-Waterman score: 2813; 99.0% identity (99.0% similar) in 397 aa overlap (1-393:1-397) 10 20 30 40 50 60 pF1KB0 MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB0 KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ 130 140 150 160 170 180 190 200 210 220 230 pF1KB0 GQGQGQGQGQGQGQGQGQGQG----RRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: CCDS42 GQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB0 HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT 250 260 270 280 290 300 300 310 320 330 340 350 pF1KB0 LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA 310 320 330 340 350 360 360 370 380 390 pF1KB0 AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY ::::::::::::::::::::::::::::::::::::: CCDS42 AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY 370 380 390 >>CCDS10355.1 MESP1 gene_id:55897|Hs108|chr15 (268 aa) initn: 842 init1: 619 opt: 712 Z-score: 468.9 bits: 95.0 E(32554): 8.5e-20 Smith-Waterman score: 802; 52.5% identity (63.2% similar) in 299 aa overlap (1-282:1-268) 10 20 30 40 50 pF1KB0 MAQSP--PPQSLLGHDHWIFAQGWGWAGHWDST------SPASSSDSSGSCPCDGARGLP ::: : :: : . :... .:: . . . : .:: :: :: : :. . CCDS10 MAQ-PLCPPLS----ESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSP--VA 10 20 30 40 50 60 70 80 90 100 110 pF1KB0 QPQPPSCSSRAAEAAATTPRRARTGPAG-GQRQSASEREKLRMRTLARALHELRRFLPPS .: :. . : .: .. : ::.. : ::::::::::::::::::::::::::::::: CCDS10 SPARPG-TLRDPRAPSVGRRGARSSRLGSGQRQSASEREKLRMRTLARALHELRRFLPPS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB0 LAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPA .::::::::::::::::::::::::::::::::::: : ::::::::: ::::::: :: CCDS10 VAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPA 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB0 EAQTQAEGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPER . ::.....:::::.: : ::::: : :::::: :::::.:::: CCDS10 QMQTRTQAEGQGQGRGLG----------------LVSAVRAGASWGSPPACPGARAAPE- 180 190 200 210 240 250 260 270 280 pF1KB0 LGRGVHDTDPWA--TPPYCPKIQ----SPPYSSQGTTSDASL--WTPPQGCPWTQSSPEP :: : . ::. : ::: : : : : . : :. CCDS10 ------PRDPPALFAEAACPEGQAMEPSPPSPLLPGDVLALLETWMPLSPLEWLPEEPK 220 230 240 250 260 290 300 310 320 330 340 pF1KB0 RNPPVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSA 393 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:48:11 2016 done: Sat Nov 5 22:48:12 2016 Total Scan time: 3.450 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]