Result of FASTA (ccds) for
pFN21AB0448
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0448, 911 aa
1>>>pF1KB0448 911 - 911 aa - 911 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.3001+/-0.00114; mu= -2.0254+/- 0.068
mean_var=243.8597+/-48.985, 0's: 0 Z-trim(110.8): 29 B-trim: 5 in 1/50
Lambda= 0.082130
statistics sampled from 11877 (11899) to 11877 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.366), width: 16
Scan time: 3.570
The best scores are: opt bits E(32554)
CCDS9016.1 E2F7 gene_id:144455|Hs108|chr12 ( 911) 5962 720.3 4e-207
CCDS7849.1 E2F8 gene_id:79733|Hs108|chr11 ( 867) 911 121.8 5.5e-27
>>CCDS9016.1 E2F7 gene_id:144455|Hs108|chr12 (911 aa)
initn: 5962 init1: 5962 opt: 5962 Z-score: 3832.1 bits: 720.3 E(32554): 4e-207
Smith-Waterman score: 5962; 99.9% identity (100.0% similar) in 911 aa overlap (1-911:1-911)
10 20 30 40 50 60
pF1KB0 MEVNCLTLKDLISPRQPRLDFAVEDGENAQKENIFVDRSRMAPKTPIKNEPIDLSKQKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MEVNCLTLKDLISPRQPRLDFAVEDGENAQKENIFVDRSRMAPKTPIKNEPIDLSKQKKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 TPERNPITPVKLVDRQQAEPWTPTANLKMLISAASPDIRDREKKKGLFRPIENKDDAFTD
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 TPERNPITPVKFVDRQQAEPWTPTANLKMLISAASPDIRDREKKKGLFRPIENKDDAFTD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 SLQLDVVGDSAVDEFEKQRPSRKQKSLGLLCQKFLARYPSYPLSTEKTTISLDEVAVSLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SLQLDVVGDSAVDEFEKQRPSRKQKSLGLLCQKFLARYPSYPLSTEKTTISLDEVAVSLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 VERRRIYDIVNVLESLHLVSRVAKNQYGWHGRHSLPKTLRNLQRLGEEQKYEEQMAYLQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 VERRRIYDIVNVLESLHLVSRVAKNQYGWHGRHSLPKTLRNLQRLGEEQKYEEQMAYLQQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 KELDLIDYKFGERKKDGDPDSQEQQLLDFSEPDCPSSSANSRKDKSLRIMSQKFVMLFLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 KELDLIDYKFGERKKDGDPDSQEQQLLDFSEPDCPSSSANSRKDKSLRIMSQKFVMLFLV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 SKTKIVTLDVAAKILIEESQDAPDHSKFKTKVRRLYDIANVLTSLALIKKVHVTEERGRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SKTKIVTLDVAAKILIEESQDAPDHSKFKTKVRRLYDIANVLTSLALIKKVHVTEERGRK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 PAFKWIGPVDFSSSDEELVDVSASVLPELKRETYGQIQVCAKQKLARHGSFNTVQASERI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 PAFKWIGPVDFSSSDEELVDVSASVLPELKRETYGQIQVCAKQKLARHGSFNTVQASERI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 QRKVNSEPSSPYREEQGSGGYSLEIGSLAAVYRQKIEDNSQGKAFASKRVVPPSSSLDPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 QRKVNSEPSSPYREEQGSGGYSLEIGSLAAVYRQKIEDNSQGKAFASKRVVPPSSSLDPV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB0 APFPVLSVDPEYCVNPLAHPVFSVAQTDLQAFSMQNGLNGQVDVSLASAASAVESLKPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 APFPVLSVDPEYCVNPLAHPVFSVAQTDLQAFSMQNGLNGQVDVSLASAASAVESLKPAL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB0 LAGQPLVYVPSASLFMLYGSLQEGPASGSGSERDDRSSEAPATVELSSAPSAQKRLCEER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LAGQPLVYVPSASLFMLYGSLQEGPASGSGSERDDRSSEAPATVELSSAPSAQKRLCEER
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB0 KPQEEDEPATKRQSREYEDGPLSLVMPKKPSDSTDLASPKTMGNRASIPLKDIHVNGQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 KPQEEDEPATKRQSREYEDGPLSLVMPKKPSDSTDLASPKTMGNRASIPLKDIHVNGQLP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB0 AAEEISGKATANSLVSSEWGNPSRNTDVEKPSKENESTKEPSLLQYLCVQSPAGLNGFNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 AAEEISGKATANSLVSSEWGNPSRNTDVEKPSKENESTKEPSLLQYLCVQSPAGLNGFNV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB0 LLSGSQTPPTVGPSSGQLPSFSVPCMVLPSPPLGPFPVLYSPAMPGPVSSTLGALPNTGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LLSGSQTPPTVGPSSGQLPSFSVPCMVLPSPPLGPFPVLYSPAMPGPVSSTLGALPNTGP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB0 VNFSLPGLGSIAQLLVGPTAVVNPKSSTLPSADPQLQSQPSLNLSPVMSRSHSVVQQPES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 VNFSLPGLGSIAQLLVGPTAVVNPKSSTLPSADPQLQSQPSLNLSPVMSRSHSVVQQPES
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB0 PVYVGHPVSVVKLHQSPVPVTPKSIQRTHRETFFKTPGSLGDPVLKRRERNQSRNTSSAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 PVYVGHPVSVVKLHQSPVPVTPKSIQRTHRETFFKTPGSLGDPVLKRRERNQSRNTSSAQ
850 860 870 880 890 900
910
pF1KB0 RRLEIPSGGAD
:::::::::::
CCDS90 RRLEIPSGGAD
910
>>CCDS7849.1 E2F8 gene_id:79733|Hs108|chr11 (867 aa)
initn: 1206 init1: 499 opt: 911 Z-score: 597.9 bits: 121.8 E(32554): 5.5e-27
Smith-Waterman score: 1401; 37.4% identity (61.2% similar) in 934 aa overlap (27-907:2-863)
10 20 30 40 50
pF1KB0 MEVNCLTLKDLISPRQPRLDFAVEDGENAQKENIFVD-RSRMAPKTPIKNEPIDLSKQKK
:: .:::.: . ..: :::.:. .
CCDS78 MEN-EKENLFCEPHKRGLMKTPLKESTTANIVLAE
10 20 30
60 70 80 90 100 110
pF1KB0 FTPERNPIT-PVKLVDRQQAEPWTPTANLKMLISAASPDIRDREKKKGLFRPIENKDDAF
. :. .:.: :.: . .:.:::::::::::::::.::.::.:..:.::: . .:
CCDS78 IQPDFGPLTTPTKPKEGSQGEPWTPTANLKMLISAVSPEIRNRDQKRGLFDNRSGLPEA-
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB0 TDSLQLDVVGDSAVDEFEKQRPSRKQKSLGLLCQKFLARYPSYPLSTEKTTISLDEVAVS
: .. . :: ::::..::::.:::::::.:::::::.:: . .. : :::::
CCDS78 KDCIHEHLSGD----EFEKSQPSRKEKSLGLLCHKFLARYPNYPNPAVNNDICLDEVAEE
100 110 120 130 140
180 190 200 210 220 230
pF1KB0 LGVERRRIYDIVNVLESLHLVSRVAKNQYGWHGRHSLPKTLRNLQRLGEEQKYEEQMAYL
:.:::::::::::::::::.:::.:::.: :::::.: ::: .:. .:::.:: ::. ..
CCDS78 LNVERRRIYDIVNVLESLHMVSRLAKNRYTWHGRHNLNKTLGTLKSIGEENKYAEQIMMI
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB0 QQKE----LDLI-DYKFGER--KKDGDPDSQEQQ-LLDFSEPDCPSSSANSRKDKSLRIM
..:: .:.: .:.. .. :.. :... .. .... . ..:.:::::::::.:
CCDS78 KKKEYEQEFDFIKSYSIEDHIIKSNTGPNGHPDMCFVELPGVEFRAASVNSRKDKSLRVM
210 220 230 240 250 260
300 310 320 330 340
pF1KB0 SQKFVMLFLVSKTKIVTLDVAAKILIEESQ-DAPDHSKFKTKVRRLYDIANVLTSLALIK
::::::::::: .::.:.::::::: :.. . :.::::::.::::::::::.:: :::
CCDS78 SQKFVMLFLVSTPQIVSLEVAAKILIGEDHVEDLDKSKFKTKIRRLYDIANVLSSLDLIK
270 280 290 300 310 320
350 360 370 380 390 400
pF1KB0 KVHVTEERGRKPAFKWIGP--VDFSSSDEELVDVSASVLPELKRETYGQIQVCAKQ----
:::::::::::::::: :: .:.. .. . : : :..: . . :::.
CCDS78 KVHVTEERGRKPAFKWTGPEISPNTSGSSPVIHFTPSDL-EVRRSSK---ENCAKNLFST
330 340 350 360 370 380
410 420 430 440 450
pF1KB0 ----KLARHGSF-NTVQASERIQRKVNSEPSSPYREE-----QGSGGYSLEIGSLAAVYR
...:: :. . :.. : .::.:: :::: . . :.:. . ....:::. .
CCDS78 RGKPNFTRHPSLIKLVKSIESDRRKINSAPSSPIKTNKAESSQNSAPFPSKMAQLAAICK
390 400 410 420 430 440
460 470 480 490 500 510
pF1KB0 QKIEDNSQGKAFASKRVVPPSSSLDPVAPF-PVLSVDPEYCVNPLAHPVFSVAQTDLQAF
...:..:. . : . :. ::::. : .... : . : .:. :
CCDS78 MQLEEQSSESRQKVKVQLARSGPCKPVAPLDPPVNAEMELTAPSLIQPLGMVPL------
450 460 470 480 490
520 530 540 550 560
pF1KB0 SMQNGLNGQVDVSLASAASAVES---LKPALLAGQPLVYVPSASLFMLYGSLQEGPASGS
. . :.. : . : .: :. :.:. : : . .: .: . . . :.::
CCDS78 -IPSPLSSAVPLILPQAPSGPSYAIYLQPTQ-AHQSV--TPPQGLSPTVCTTHSSKATGS
500 510 520 530 540 550
570 580 590 600 610 620
pF1KB0 GSERDDRSSEAPATVELSSAPSAQKRLCEERKPQEEDEPATKRQSREYEDGPLSLVMPKK
. : . .: . .:: . : : : . : .: .:: : . :.
CCDS78 KDSTDATTEKAANDTSKASASTRPGSLL----PAPERQGAKSR-TRE----PAGERGSKR
560 570 580 590 600
630 640 650 660 670 680
pF1KB0 PSDSTDLASPKTMGNRASIPLKDIHVNGQLPAAEEISGKATANSLVSSEWGNPSRNTDVE
: : .: : . . :: .. .. :. :: . :: : : .
CCDS78 ASMLEDSGSKKKFKE----DLKGLE---NVSATLFPSGYLIPLTQCSS-LGAESILS---
610 620 630 640 650
690 700 710 720 730 740
pF1KB0 KPSKENESTKEPSLLQYLCVQSP-AGLNGFNVLLSGSQTPPTVGPSSGQLPSFSV-PCMV
.::: :. :. : .:: ::. . ...:. .. ..::: : : .
CCDS78 --GKENSSALSPNHRIY---SSPIAGV----IPVTSSEL------TAVNFPSFHVTPLKL
660 670 680 690 700
750 760 770 780 790
pF1KB0 LPSPP-LGPFPVLYSPAM----PGPVSSTLGALPNTGPVNFSLPGLGSIA---QLLVGPT
. :: .. :: :::. : :... :... :::.: :: :. :: ..:
CCDS78 MVSPTSVAAVPVGNSPALASSHPVPIQN-----PSSAIVNFTLQHLGLISPNVQLSASPG
710 720 730 740 750
800 810 820 830 840 850
pF1KB0 AVVNPKSSTLPSAD--PQ---LQSQPSLNL-SPVMSRSHSVVQQPESPVYVGHPVSVVKL
. . : : . :.. :. :. . : ::: ..: ::. :. :.:.
CCDS78 SGIVPVSPRIESVNVAPENAGTQQGRATNYDSPVPGQS-----QPN-----GQSVAVTGA
760 770 780 790 800
860 870 880 890 900
pF1KB0 HQSPVPVTPKSIQRTHRETFFKTPGSLGDPVLKRRERNQSRNTSS------AQRRLEIPS
.: :::::::. : . :.::.:::. :. . .. : .: ::.::. .
CCDS78 QQ-PVPVTPKGSQLVA-ESFFRTPGGPTKPTSSSCMDFEGANKTSLGTLFVPQRKLEVST
810 820 830 840 850 860
910
pF1KB0 GGAD
CCDS78 EDVH
911 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 17:50:55 2016 done: Mon Nov 7 17:50:56 2016
Total Scan time: 3.570 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]