Result of FASTA (omim) for
pFN21AB0431
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0431, 476 aa
1>>>pF1KB0431 476 - 476 aa - 476 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.1113+/-0.000423; mu= -9.1521+/- 0.026
mean_var=368.6116+/-74.758, 0's: 0 Z-trim(122.1): 97 B-trim: 1074 in 1/55
Lambda= 0.066802
statistics sampled from 39465 (39573) to 39465 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.464), width: 16
Scan time: 10.340
The best scores are: opt bits E(85289)
NP_075387 (OMIM: 605530) regulator of nonsense tra ( 476) 3186 321.1 4.3e-87
XP_016876198 (OMIM: 605530) PREDICTED: regulator o ( 346) 2257 231.4 3.1e-60
XP_006720054 (OMIM: 605530) PREDICTED: regulator o ( 346) 2257 231.4 3.1e-60
XP_011533147 (OMIM: 605530) PREDICTED: regulator o ( 346) 2257 231.4 3.1e-60
NP_542418 (OMIM: 605530) regulator of nonsense tra ( 443) 2039 210.5 7.8e-54
XP_016876199 (OMIM: 605530) PREDICTED: regulator o ( 275) 1854 192.5 1.3e-48
XP_011533150 (OMIM: 605530) PREDICTED: regulator o ( 275) 1854 192.5 1.3e-48
XP_016876200 (OMIM: 605530) PREDICTED: regulator o ( 275) 1854 192.5 1.3e-48
XP_011533149 (OMIM: 605530) PREDICTED: regulator o ( 275) 1854 192.5 1.3e-48
XP_005266259 (OMIM: 605530) PREDICTED: regulator o ( 275) 1854 192.5 1.3e-48
XP_011533148 (OMIM: 605530) PREDICTED: regulator o ( 315) 1845 191.7 2.6e-48
XP_011533146 (OMIM: 605530) PREDICTED: regulator o ( 406) 1802 187.6 5.5e-47
NP_075386 (OMIM: 300298,300676) regulator of nonse ( 470) 1291 138.4 4.1e-32
XP_016885228 (OMIM: 300298,300676) PREDICTED: regu ( 630) 1289 138.3 5.8e-32
NP_542199 (OMIM: 300298,300676) regulator of nonse ( 483) 1070 117.1 1.1e-25
XP_016885229 (OMIM: 300298,300676) PREDICTED: regu ( 609) 1070 117.2 1.3e-25
XP_016885227 (OMIM: 300298,300676) PREDICTED: regu ( 641) 1070 117.2 1.3e-25
XP_016885226 (OMIM: 300298,300676) PREDICTED: regu ( 643) 1070 117.2 1.3e-25
XP_016876201 (OMIM: 605530) PREDICTED: regulator o ( 251) 950 105.3 2e-22
>>NP_075387 (OMIM: 605530) regulator of nonsense transcr (476 aa)
initn: 3186 init1: 3186 opt: 3186 Z-score: 1684.5 bits: 321.1 E(85289): 4.3e-87
Smith-Waterman score: 3186; 100.0% identity (100.0% similar) in 476 aa overlap (1-476:1-476)
10 20 30 40 50 60
pF1KB0 MRSEKEGAGGLRAAVAARGPSGREKLSALEVQFHRDSQQQEAETPPTSSSGCGGGAGKPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 MRSEKEGAGGLRAAVAARGPSGREKLSALEVQFHRDSQQQEAETPPTSSSGCGGGAGKPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 EEKRTALSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 EEKRTALSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 LETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 LETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 RRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGEEPTTEKPKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 RRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGEEPTTEKPKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 RGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 RGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 YHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAMERLGRAQRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 YHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAMERLGRAQRC
370 380 390 400 410 420
430 440 450 460 470
pF1KB0 DDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEKREEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 DDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEKREEAE
430 440 450 460 470
>>XP_016876198 (OMIM: 605530) PREDICTED: regulator of no (346 aa)
initn: 2255 init1: 2255 opt: 2257 Z-score: 1202.5 bits: 231.4 E(85289): 3.1e-60
Smith-Waterman score: 2257; 98.8% identity (98.8% similar) in 344 aa overlap (133-476:4-346)
110 120 130 140 150 160
pF1KB0 DLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLR
: :: :::::::::::::::::::::::
XP_016 MASGTCFL-LKGLEYPAVVEFAPFQKIAKKKLR
10 20 30
170 180 190 200 210 220
pF1KB0 KKDAKTGSIEDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKDAKTGSIEDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIK
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB0 NRKLEKQRIREEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRKLEKQRIREEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIK
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB0 LLKKPEKGEEPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLKKPEKGEEPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSD
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB0 KEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQ
220 230 240 250 260 270
410 420 430 440 450 460
pF1KB0 DSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKA
280 290 300 310 320 330
470
pF1KB0 EGSGTGPEKREEAE
::::::::::::::
XP_016 EGSGTGPEKREEAE
340
>>XP_006720054 (OMIM: 605530) PREDICTED: regulator of no (346 aa)
initn: 2255 init1: 2255 opt: 2257 Z-score: 1202.5 bits: 231.4 E(85289): 3.1e-60
Smith-Waterman score: 2257; 98.8% identity (98.8% similar) in 344 aa overlap (133-476:4-346)
110 120 130 140 150 160
pF1KB0 DLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLR
: :: :::::::::::::::::::::::
XP_006 MASGTCFL-LKGLEYPAVVEFAPFQKIAKKKLR
10 20 30
170 180 190 200 210 220
pF1KB0 KKDAKTGSIEDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KKDAKTGSIEDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIK
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB0 NRKLEKQRIREEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NRKLEKQRIREEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIK
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB0 LLKKPEKGEEPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLKKPEKGEEPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSD
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB0 KEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQ
220 230 240 250 260 270
410 420 430 440 450 460
pF1KB0 DSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKA
280 290 300 310 320 330
470
pF1KB0 EGSGTGPEKREEAE
::::::::::::::
XP_006 EGSGTGPEKREEAE
340
>>XP_011533147 (OMIM: 605530) PREDICTED: regulator of no (346 aa)
initn: 2255 init1: 2255 opt: 2257 Z-score: 1202.5 bits: 231.4 E(85289): 3.1e-60
Smith-Waterman score: 2257; 98.8% identity (98.8% similar) in 344 aa overlap (133-476:4-346)
110 120 130 140 150 160
pF1KB0 DLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLR
: :: :::::::::::::::::::::::
XP_011 MASGTCFL-LKGLEYPAVVEFAPFQKIAKKKLR
10 20 30
170 180 190 200 210 220
pF1KB0 KKDAKTGSIEDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKDAKTGSIEDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIK
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB0 NRKLEKQRIREEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRKLEKQRIREEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIK
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB0 LLKKPEKGEEPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLKKPEKGEEPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSD
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB0 KEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQ
220 230 240 250 260 270
410 420 430 440 450 460
pF1KB0 DSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKA
280 290 300 310 320 330
470
pF1KB0 EGSGTGPEKREEAE
::::::::::::::
XP_011 EGSGTGPEKREEAE
340
>>NP_542418 (OMIM: 605530) regulator of nonsense transcr (443 aa)
initn: 2039 init1: 2039 opt: 2039 Z-score: 1087.5 bits: 210.5 E(85289): 7.8e-54
Smith-Waterman score: 2900; 93.1% identity (93.1% similar) in 476 aa overlap (1-476:1-443)
10 20 30 40 50 60
pF1KB0 MRSEKEGAGGLRAAVAARGPSGREKLSALEVQFHRDSQQQEAETPPTSSSGCGGGAGKPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 MRSEKEGAGGLRAAVAARGPSGREKLSALEVQFHRDSQQQEAETPPTSSSGCGGGAGKPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 EEKRTALSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 EEKRTALSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF
:::::::::::::::::::: :::::::
NP_542 PDDILLFRDRFDGYIFLDSK---------------------------------DPEYKKF
130 140
190 200 210 220 230 240
pF1KB0 LETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 LETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERR
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB0 RRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGEEPTTEKPKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 RRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGEEPTTEKPKE
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB0 RGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 RGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQR
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB0 YHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAMERLGRAQRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 YHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAMERLGRAQRC
330 340 350 360 370 380
430 440 450 460 470
pF1KB0 DDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEKREEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 DDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEKREEAE
390 400 410 420 430 440
>>XP_016876199 (OMIM: 605530) PREDICTED: regulator of no (275 aa)
initn: 1854 init1: 1854 opt: 1854 Z-score: 993.9 bits: 192.5 E(85289): 1.3e-48
Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 275 aa overlap (202-476:1-275)
180 190 200 210 220 230
pF1KB0 EDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRI
::::::::::::::::::::::::::::::
XP_016 MEAKTRELIARRTTPLLEYIKNRKLEKQRI
10 20 30
240 250 260 270 280 290
pF1KB0 REEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE
40 50 60 70 80 90
300 310 320 330 340 350
pF1KB0 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERS
100 110 120 130 140 150
360 370 380 390 400 410
pF1KB0 QEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAM
160 170 180 190 200 210
420 430 440 450 460 470
pF1KB0 ERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEK
220 230 240 250 260 270
pF1KB0 REEAE
:::::
XP_016 REEAE
>>XP_011533150 (OMIM: 605530) PREDICTED: regulator of no (275 aa)
initn: 1854 init1: 1854 opt: 1854 Z-score: 993.9 bits: 192.5 E(85289): 1.3e-48
Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 275 aa overlap (202-476:1-275)
180 190 200 210 220 230
pF1KB0 EDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRI
::::::::::::::::::::::::::::::
XP_011 MEAKTRELIARRTTPLLEYIKNRKLEKQRI
10 20 30
240 250 260 270 280 290
pF1KB0 REEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE
40 50 60 70 80 90
300 310 320 330 340 350
pF1KB0 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERS
100 110 120 130 140 150
360 370 380 390 400 410
pF1KB0 QEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAM
160 170 180 190 200 210
420 430 440 450 460 470
pF1KB0 ERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEK
220 230 240 250 260 270
pF1KB0 REEAE
:::::
XP_011 REEAE
>>XP_016876200 (OMIM: 605530) PREDICTED: regulator of no (275 aa)
initn: 1854 init1: 1854 opt: 1854 Z-score: 993.9 bits: 192.5 E(85289): 1.3e-48
Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 275 aa overlap (202-476:1-275)
180 190 200 210 220 230
pF1KB0 EDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRI
::::::::::::::::::::::::::::::
XP_016 MEAKTRELIARRTTPLLEYIKNRKLEKQRI
10 20 30
240 250 260 270 280 290
pF1KB0 REEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE
40 50 60 70 80 90
300 310 320 330 340 350
pF1KB0 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERS
100 110 120 130 140 150
360 370 380 390 400 410
pF1KB0 QEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAM
160 170 180 190 200 210
420 430 440 450 460 470
pF1KB0 ERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEK
220 230 240 250 260 270
pF1KB0 REEAE
:::::
XP_016 REEAE
>>XP_011533149 (OMIM: 605530) PREDICTED: regulator of no (275 aa)
initn: 1854 init1: 1854 opt: 1854 Z-score: 993.9 bits: 192.5 E(85289): 1.3e-48
Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 275 aa overlap (202-476:1-275)
180 190 200 210 220 230
pF1KB0 EDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRI
::::::::::::::::::::::::::::::
XP_011 MEAKTRELIARRTTPLLEYIKNRKLEKQRI
10 20 30
240 250 260 270 280 290
pF1KB0 REEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE
40 50 60 70 80 90
300 310 320 330 340 350
pF1KB0 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERS
100 110 120 130 140 150
360 370 380 390 400 410
pF1KB0 QEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAM
160 170 180 190 200 210
420 430 440 450 460 470
pF1KB0 ERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEK
220 230 240 250 260 270
pF1KB0 REEAE
:::::
XP_011 REEAE
>>XP_005266259 (OMIM: 605530) PREDICTED: regulator of no (275 aa)
initn: 1854 init1: 1854 opt: 1854 Z-score: 993.9 bits: 192.5 E(85289): 1.3e-48
Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 275 aa overlap (202-476:1-275)
180 190 200 210 220 230
pF1KB0 EDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRI
::::::::::::::::::::::::::::::
XP_005 MEAKTRELIARRTTPLLEYIKNRKLEKQRI
10 20 30
240 250 260 270 280 290
pF1KB0 REEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 REEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGE
40 50 60 70 80 90
300 310 320 330 340 350
pF1KB0 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERS
100 110 120 130 140 150
360 370 380 390 400 410
pF1KB0 QEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAM
160 170 180 190 200 210
420 430 440 450 460 470
pF1KB0 ERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEK
220 230 240 250 260 270
pF1KB0 REEAE
:::::
XP_005 REEAE
476 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:31:26 2016 done: Sun Nov 6 14:31:28 2016
Total Scan time: 10.340 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]