FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0101, 111 aa
  1>>>pF1KA0101 111 - 111 aa - 111 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5651+/-0.000541; mu= 9.4536+/- 0.033
 mean_var=72.1549+/-14.029, 0's: 0 Z-trim(113.6): 18  B-trim: 4 in 1/51
 Lambda= 0.150988
 statistics sampled from 14247 (14251) to 14247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.438), width:  16
 Scan time:  1.210

The best scores are:                                      opt bits E(32554)
CCDS10193.1 KIAA0101 gene_id:9768|Hs108|chr15      ( 111)  737 168.4 8.2e-43
CCDS32269.1 KIAA0101 gene_id:9768|Hs108|chr15      (  65)  250 62.2 4.5e-11


>>CCDS10193.1 KIAA0101 gene_id:9768|Hs108|chr15           (111 aa)
 initn: 737 init1: 737 opt: 737  Z-score: 882.1  bits: 168.4 E(32554): 8.2e-43
Smith-Waterman score: 737; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)

               10        20        30        40        50        60
pF1KA0 MVRTKADSVPGTYRKVVAARAPRKVLGSSTSATNSTSVSSRKAENKYAGGNPVCVRPTPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVRTKADSVPGTYRKVVAARAPRKVLGSSTSATNSTSVSSRKAENKYAGGNPVCVRPTPK
               10        20        30        40        50        60

               70        80        90       100       110 
pF1KA0 WQKGIGEFFRLSPKDSEKENQIPEEAGSSGLGKAKRKACPLQPDHTNDEKE
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WQKGIGEFFRLSPKDSEKENQIPEEAGSSGLGKAKRKACPLQPDHTNDEKE
               70        80        90       100       110 

>>CCDS32269.1 KIAA0101 gene_id:9768|Hs108|chr15           (65 aa)
 initn: 250 init1: 250 opt: 250  Z-score: 312.3  bits: 62.2 E(32554): 4.5e-11
Smith-Waterman score: 250; 100.0% identity (100.0% similar) in 42 aa overlap (1-42:1-42)

               10        20        30        40        50        60
pF1KA0 MVRTKADSVPGTYRKVVAARAPRKVLGSSTSATNSTSVSSRKAENKYAGGNPVCVRPTPK
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS32 MVRTKADSVPGTYRKVVAARAPRKVLGSSTSATNSTSVSSRKEHVLCNLITQMMKKNRTF
               10        20        30        40        50        60

               70        80        90       100       110 
pF1KA0 WQKGIGEFFRLSPKDSEKENQIPEEAGSSGLGKAKRKACPLQPDHTNDEKE
                                                          
CCDS32 SFIFE                                              
                                                          




111 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:27:07 2016 done: Fri Nov  4 00:27:08 2016
 Total Scan time:  1.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]