hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20090426/iprscan-20090426-07235711/chunk_1/iprscan-20090426-07235711.nocrc
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Query sequence: pF1KE0169
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00054                                                  97.4    1.7e-24   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00054    1/3      64    92 ..     1    29 []    29.2  0.00056
SM00054    2/3     100   128 ..     1    29 []    39.0  6.5e-07
SM00054    3/3     148   176 ..     1    29 []    29.2  0.00057

Alignments of top-scoring domains:
SM00054: domain 1 of 3, from 64 to 92: score 29.2, E = 0.00056
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                        + +Fr fD++gdG+Idf Ef+ +l+     
   pF1KE0169    64    FAEHVFRTFDANGDGTIDFREFIIALSVT    92   

SM00054: domain 2 of 3, from 100 to 128: score 39.0, E = 6.5e-07
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      +lk+aF+++D Dg+G+I++ E++++++++   
   pF1KE0169   100    KLKWAFSMYDLDGNGYISKAEMLEIVQAI    128  

SM00054: domain 3 of 3, from 148 to 176: score 29.2, E = 0.00057
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                        +++Fr +D+++dGk++ eEf+++ ks    
   pF1KE0169   148    RTEKIFRQMDTNRDGKLSMEEFIRGAKSD    176  

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