hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20091008/iprscan-20091008-19205516/chunk_1/iprscan-20091008-19205516.nocrc
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Query sequence: pF1KE0773
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 332.1    3.8e-95   1
SM00219                                                  44.1    7.2e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      77   327 ..     1   280 []    44.1  7.2e-14
SM00220    1/1      77   327 ..     1   231 []   332.1  3.8e-95

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 77 to 327: score 44.1, E = 7.2e-14
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl
                       + g+ LG G FG Vy+++ k+++  VA K+L ++  ++++ +  ++
   pF1KE0773    77    FEIGRPLGKGKFGNVYLAREKkshFIVALKVLFKSQiekegvEHQLR 123  

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                   rE++i  +l  +HpNi++L+ +  +          +++++Ey++ G L +
   pF1KE0773   124 REIEIQAHL--HHPNILRLYNYFYDR-------RRIYLILEYAPRGELYK 164  

                   yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv
                    L+k+   +  +    ++   A+   Y + k+++HRD+   N L+g ++ 
   pF1KE0773   165 ELQKSCT-FDEQRTATIMEELADALMYCHGKKVIHRDIKPENLLLGLKGE 213  

                   vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdg
                    KI+DFG s    +          +++    +g     +  ++PE +  +
   pF1KE0773   214 LKIADFGWSVHAPSL-------RRKTM----CGT----LDYLPPEMIEGR 248  

                   kFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp
                   + ++k D W  GVl++E++  G +P +       s  e ++++ k   l+
   pF1KE0773   249 MHNEKVDLWCIGVLCYELL-VGNPPFES-----ASHNETYRRIVKV-DLK 291  

                   kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                    P++         P+   dl+++  +++P++R   ++++ +      
   pF1KE0773   292 FPAS--------VPTGAQDLISKLLRHNPSERLPLAQVsaHPWV    327  

SM00220: domain 1 of 1, from 77 to 327: score 332.1, E = 3.8e-95
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      +e++++lGkG FG Vylar+kk++ +vA+Kv+ +++ ++++ + +++
   pF1KE0773    77    FEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFksqiekegveHQLR 123  

                   rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                   rEi+i  + +HPNI +Ly +f+d+ ++yl++Ey++   G+L++ l+k  +
   pF1KE0773   124 REIEIQAHlHHPNILRLYNYFYDrRRIYLILEYAPR--GELYKELQKSCT 171  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                         ++E++++ ++ ++++aL Y+H +++iHRD+KPeN+LL  ++++K
   pF1KE0773   172 ------FDEqRTATIMEELADALMYCHGKKVIHRDIKPENLLLGLkgELK 215  

                   laDFGlArql.....ttfvGTpeYmAPEvl...gYgkpavDiWSlGcily
                   +aDFG + + ++ +++t++GT++Y++PE+++++ ++  +vD W +G++ y
   pF1KE0773   216 IADFGWSVHApslrrKTMCGTLDYLPPEMIegrMHNE-KVDLWCIGVLCY 264  

                   ElltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPek
                   Ell+G pPF++  +++++++i++ + + + + +  a dLi+klL+ +P++
   pF1KE0773   265 ELLVGNPPFEsaSHNETYRRIVkvdlkfpasvPTGAQDLISKLLRHNPSE 314  

                   Rlta.eaLedeldikaHPff<-*
                   Rl   ++ +       HP++   
   pF1KE0773   315 RLPLaQVSA-------HPWV    327  

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