hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080305/iprscan-20080305-22071160/chunk_1/iprscan-20080305-22071160.nocrc
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Query sequence: pF1KSDA0780
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 220.6    1.4e-61   1
SM00333                                                  88.8    6.3e-22   2
SM00249                                                  62.6    4.9e-14   2
SM00545                                                  61.5    1.1e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00545    1/1      15    57 ..     1    45 []    61.5  1.1e-13
SM00558    1/1     144   310 ..     1   214 []   220.6  1.4e-61
SM00249    1/2     689   747 ..     1    39 []    31.8  9.2e-05
SM00249    2/2     809   865 ..     1    39 []    30.8  0.00019
SM00333    1/2     877   934 ..     1    60 []    47.9  1.4e-09
SM00333    2/2     935   991 ..     1    60 []    41.0  1.6e-07

Alignments of top-scoring domains:
SM00545: domain 1 of 1, from 15 to 57: score 61.5, E = 1.1e-13
                   *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<-
                       i++f+P++eEF+ + +Y ++ +++g  A+++G +Kv+PPk+WkP  
  pF1KSDA078    15    KIMTFRPSMEEFREFNKYLAYMESKG--AHRAGLAKVIPPKEWKP   57   

                   *
                    
  pF1KSDA078     -   -    

SM00558: domain 1 of 1, from 144 to 310: score 220.6, E = 1.4e-61
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      +++ ++wn+a+l               ++l+ +++e +   i g+++
  pF1KSDA078   144    DEGVDEWNIARLN--------------TVLDVVEEE-CGISIEGVNT 175  

                   gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli
                         pyly+Gm+   ++t+ wH++d+dlyS+Nylh+g++   K Wy+i
  pF1KSDA078   176 ------PYLYFGMW---KTTFAWHTEDMDLYSINYLHFGEP---KSWYAI 213  

                   Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr
                   Ppe+  +le+l++ +        +p++++ ++ +l+h++t+isp vlkk 
  pF1KSDA078   214 PPEHGKRLERLAQGF--------FPSSSQGCDAFLRHKMTLISPSVLKKY 255  

                   lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF
                   +           +p  +++Q++Gef++++p+ yHa+fn+G fn+a++ NF
  pF1KSDA078   256 G-----------IPFDKITQEAGEFMITFPYGYHAGFNHG-FNCAESTNF 293  

                   aspewlpmglrlveelr<-*
                   a+ +w+++g+ +  + +   
  pF1KSDA078   294 ATVRWIDYGKVAKLCTC    310  

SM00249: domain 1 of 2, from 689 to 747: score 31.8, E = 9.2e-05
                   *->yC.vCgk.................g.llqCdkgCdrwyHv.Clgppl
                      +C +  +++ + ++++   ++++++ l++C  +C++ +H +C+g+p 
  pF1KSDA078   689    MCfIYSEenieysppnafleedgtSlLISCA-KCCVRVHAsCYGIPS 734  

                   eepdg.wyCprCk<-*
                   +e  ++w+C rCk   
  pF1KSDA078   735 HEICDgWLCARCK    747  

SM00249: domain 2 of 2, from 809 to 865: score 30.8, E = 0.00019
                   *->yC.vCgk......g.llqCd.kgCdrwyHv.Clgpple.......ep
                       C +C+ + ++ +g ++qC+ ++C+ ++Hv+C++ ++   ++++ + 
  pF1KSDA078   809    KCiFCRHrvkrvsGaCIQCSyGRCPASFHVtCAHAAGVlmepddwPY 855  

                   dg.wyCprCk<-*
                     +  C r+k   
  pF1KSDA078   856 VVnITCFRHK    865  

SM00333: domain 1 of 2, from 877 to 934: score 47.9, E = 1.4e-09
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                      + + vG+ v+++++ + ++Y +r+ +v+s+ ++yeV+f+D  +++ +
  pF1KSDA078   877    KVISVGQTVITKHR-NTRYYSCRVMAVTSQ-TFYEVMFDDGSFSRDT 921  

                   plsdlrqlpekfa<-*
                    ++d+ + ++ ++   
  pF1KSDA078   922 FPEDIVSRDCLKL    934  

SM00333: domain 2 of 2, from 935 to 991: score 41.0, E = 1.6e-07
                   *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv
                      +++++G++v+++w+ Dg  Y A+  +   +  +y+V f+D G+++  
  pF1KSDA078   935    GPPAEGEVVQVKWP-DGKLYGAKYFGSNIA-HMYQVEFED-GSQIAM 978  

                   plsdlrqlpekfa<-*
                   +++d+++l+e+++   
  pF1KSDA078   979 KREDIYTLDEELP    991  

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