hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/smart.HMMs.bin
Sequence file:            /tmp/20080305/iprscan-20080305-05334022/chunk_1/iprscan-20080305-05334022.nocrc
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Query sequence: pF1KA0473
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00271                                                  31.1    0.00016   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00271    1/1     848   909 ..     1    72 []    31.1  0.00016

Alignments of top-scoring domains:
SM00271: domain 1 of 1, from 848 to 909: score 31.1, E = 0.00016
                   *->tdyYeiLGvskdAsddeIKKAYRkLAlkyHPDKnpgdpelseeklpe
                      ++ ++  G     +++++KK YRk +l +HPDK +g p         
   pF1KA0473   848    ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY-------- 886  

                   eekeeAeekFkeIneAYevLsDpek<-*
                     ++ A+  F+e+n A++   ++ +   
   pF1KA0473   887 --EQYAKMIFMELNDAWSEFENQGQ    909  

//