hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080304/iprscan-20080304-19303898/chunk_1/iprscan-20080304-19303898.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: pF1KB9835
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    330.3     1e-109   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    332.2    8.4e-97   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      56   305 ..     1   272 []   330.3   1e-109
PF00001.12.ls   1/1      56   305 ..     1   272 []   332.2  8.4e-97

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 56 to 305: score 330.3, E = 1e-109
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+LV+lvil+++  r++t++++lNLA+ADLLf+ltlp wa++ ++g
   pF1KB9835    56    GNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNG 102  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                      W fG++lCk+v+ l  vn+y++illL++IS+DRYlAIvh+ r+ +  
   pF1KB9835   103 ---WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQK 149  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +   + k+v+l++W l++ lslP++lf++ ++++++      ++C++   
   pF1KB9835   150 R--HLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNS-----SPVCYEVLG 192  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                   +++    + w++++ +l +++gF++Pl+v+l+cY+++lrtl+k+ +    
   pF1KB9835   193 NDT----AKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHM---- 234  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                        ++++a++++++vv++F+lCWlPy++vll dtl+++  i + sCe 
   pF1KB9835   235 ----GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMrTQVI-QESCER 279  

                   ervlptallvtlwLayvNsclNPiIY<-*
                   ++ + +al++t+ L++++sclNPiIY   
   pF1KB9835   280 RNNIGRALDATEILGFLHSCLNPIIY    305  

PF00001.12.ls: domain 1 of 1, from 56 to 305: score 332.2, E = 8.4e-97
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+LV+lvil+++  r++t++++lNLA+ADLLf+ltlp wa++ ++g
   pF1KB9835    56    GNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNG 102  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                      W fG++lCk+v+ l  vn+y++illL++IS+DRYlAIvh+ r+ +  
   pF1KB9835   103 ---WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQK 149  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +   + k+v+l++W l++ lslP++lf++ ++++++      ++C++   
   pF1KB9835   150 R--HLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNS-----SPVCYEVLG 192  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                   +++    + w++++ +l +++gF++Pl+v+l+cY+++lrtl+k+ +    
   pF1KB9835   193 NDT----AKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHM---- 234  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                        ++++a++++++vv++F+lCWlPy++vll dtl+++  i + sCe 
   pF1KB9835   235 ----GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMrTQVI-QESCER 279  

                   ervlptallvtlwLayvNsclNPiIY<-*
                   ++ + +al++t+ L++++sclNPiIY   
   pF1KB9835   280 RNNIGRALDATEILGFLHSCLNPIIY    305  

//