hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080306/iprscan-20080306-04210813/chunk_1/iprscan-20080306-04210813.nocrc
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Query sequence: pF1KB8810
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    296.0    2.3e-98   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    298.0    1.7e-86   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      48   308 ..     1   272 []   296.0  2.3e-98
PF00001.12.ls   1/1      48   308 ..     1   272 []   298.0  1.7e-86

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 48 to 308: score 296.0, E = 2.3e-98
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GNlL+++vi++++k  ++t ++  NL ++D+Lf+++lp  ++yy++g
   pF1KB8810    48    GNLLALVVIVQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYAMG 94   

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                    +dW +G+alC+++  ++++n+ya++ ++t++SiDR++A+vhPlry+ + 
   pF1KB8810    95 -FDWRIGDALCRITALVFYINTYAGVNFMTCLSIDRFIAVVHPLRYNKIK 143  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +   +Ak+v+++vW+l ++ +lP l+  ++k+++e+      ++ +++f+
   pF1KB8810   144 R-IEHAKGVCIFVWILVFAQTLPLLINPMSKQEAERI----TCMEYPNFE 188  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                   e +       l ++ l ++++g+vlPl++il+cY++I ++l+++a++ + 
   pF1KB8810   189 ETK------SLPWILLGACFIGYVLPLIIILICYSQICCKLFRTAKQNPL 232  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                   +++s   +ka+ t+++++vvFvlC++Py+++++ +++++l + ++++C++
   pF1KB8810   233 TEKSGVNKKALNTIILIIVVFVLCFTPYHVAIIQHMIKkLRFSNFLECSQ 282  

                   ervlptallvtlwLayvNsclNPiIY<-*
                   ++  ++ l++t++L  +N+c++P+IY   
   pF1KB8810   283 RHSFQISLHFTVCLMNFNCCMDPFIY    308  

PF00001.12.ls: domain 1 of 1, from 48 to 308: score 298.0, E = 1.7e-86
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GNlL+++vi++++k  ++t ++  NL ++D+Lf+++lp  ++yy++g
   pF1KB8810    48    GNLLALVVIVQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYAMG 94   

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                    +dW +G+alC+++  ++++n+ya++ ++t++SiDR++A+vhPlry+ + 
   pF1KB8810    95 -FDWRIGDALCRITALVFYINTYAGVNFMTCLSIDRFIAVVHPLRYNKIK 143  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +   +Ak+v+++vW+l ++ +lP l+  ++k+++e+      ++ +++f+
   pF1KB8810   144 R-IEHAKGVCIFVWILVFAQTLPLLINPMSKQEAERI----TCMEYPNFE 188  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                   e +       l ++ l ++++g+vlPl++il+cY++I ++l+++a++ + 
   pF1KB8810   189 ETK------SLPWILLGACFIGYVLPLIIILICYSQICCKLFRTAKQNPL 232  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
                   +++s   +ka+ t+++++vvFvlC++Py+++++ +++++l + ++++C++
   pF1KB8810   233 TEKSGVNKKALNTIILIIVVFVLCFTPYHVAIIQHMIKkLRFSNFLECSQ 282  

                   ervlptallvtlwLayvNsclNPiIY<-*
                   ++  ++ l++t++L  +N+c++P+IY   
   pF1KB8810   283 RHSFQISLHFTVCLMNFNCCMDPFIY    308  

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