hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /data/Pfam.bin
Sequence file:            /tmp/20080305/iprscan-20080305-22071160/chunk_1/iprscan-20080305-22071160.nocrc
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Query sequence: pF1KSDA0780
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02373.13.fs JmjC domain                                    228.1    5.9e-67   1
PF02373.13.ls JmjC domain                                    230.1    4.6e-66   1
PF02375.7.ls jmjN domain                                     82.3    1.4e-21   1
PF02375.7.fs jmjN domain                                     80.5    3.5e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02375.7.fs   1/1      17    62 ..     1    53 []    80.5  3.5e-21
PF02375.7.ls   1/1      17    62 ..     1    53 []    82.3  1.4e-21
PF02373.13.fs   1/1     177   293 ..     1   126 []   228.1  5.9e-67
PF02373.13.ls   1/1     177   293 ..     1   126 []   230.1  4.6e-66
PF00628.19.fs   1/2     714   749 ..    15    51 .]    19.9  5.3e-06

Alignments of top-scoring domains:
PF02375.7.fs: domain 1 of 1, from 17 to 62: score 80.5, E = 3.5e-21
                   *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk
                      ++F+P+meEF+ +++Y+a+  ++ gA+++G++KV+PPkeW      k
  pF1KSDA078    17    MTFRPSMEEFREFNKYLAYM-ESKGAHRAGLAKVIPPKEW------K 56   

                   Ppcald<-*
                   P++ +d   
  pF1KSDA078    57 PRQCYD    62   

PF02375.7.ls: domain 1 of 1, from 17 to 62: score 82.3, E = 1.4e-21
                   *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk
                      ++F+P+meEF+ +++Y+a+  ++ gA+++G++KV+PPkeW      k
  pF1KSDA078    17    MTFRPSMEEFREFNKYLAYM-ESKGAHRAGLAKVIPPKEW------K 56   

                   Ppcald<-*
                   P++ +d   
  pF1KSDA078    57 PRQCYD    62   

PF02373.13.fs: domain 1 of 1, from 177 to 293: score 228.1, E = 5.9e-67
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      +lY+Gm+++t++wH+Ed++lySinylhfg+pk WY+iP+e+++++e 
  pF1KSDA078   177    YLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE- 222  

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                     ++++ +  +P++ ++++ ++ lrh++tlisP+v  L++ gip+ +++Q
  pF1KSDA078   223 --RLAQGF--FPSS-SQGCDAF-LRHKMTLISPSV--LKKYGIPFDKITQ 264  

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   ++GEf+itfP++yHa+fN+Gfn+ae++NF   
  pF1KSDA078   265 EAGEFMITFPYGYHAGFNHGFNCAESTNF    293  

PF02373.13.ls: domain 1 of 1, from 177 to 293: score 230.1, E = 4.6e-66
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      +lY+Gm+++t++wH+Ed++lySinylhfg+pk WY+iP+e+++++e 
  pF1KSDA078   177    YLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLE- 222  

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                     ++++ +  +P++ ++++ ++ lrh++tlisP+v  L++ gip+ +++Q
  pF1KSDA078   223 --RLAQGF--FPSS-SQGCDAF-LRHKMTLISPSV--LKKYGIPFDKITQ 264  

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   ++GEf+itfP++yHa+fN+Gfn+ae++NF   
  pF1KSDA078   265 EAGEFMITFPYGYHAGFNHGFNCAESTNF    293  

PF00628.19.fs: domain 1 of 2, from 714 to 749: score 19.9, E = 5.3e-06
                   *->dllqCDgCdrwfHlaClgpplepeeipe.WyCpeCkpk<-*
                      +l+ C +C++ +H++C+g+p    ei ++W+C +Ck+    
  pF1KSDA078   714    LLISCAKCCVRVHASCYGIPSH--EICDgWLCARCKRN    749  

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