Result of FASTA (omim) for
pF1KSDF0201
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDF0201, 703 aa
1>>>pF1KSDF0201 703 - 703 aa - 703 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.4591+/-0.000566; mu= -24.0774+/- 0.035
mean_var=800.7260+/-171.641, 0's: 0 Z-trim(123.3): 518 B-trim: 3375 in 2/57
Lambda= 0.045324
statistics sampled from 42156 (42773) to 42156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.502), width: 16
Scan time: 14.930
The best scores are: opt bits E(85289)
NP_005193 (OMIM: 120252,136800,609140) collagen al ( 703) 5227 357.5 1e-97
XP_005270534 (OMIM: 120252,136800,609140) PREDICTE ( 780) 5227 357.5 1.1e-97
NP_001281276 (OMIM: 120252,136800,609140) collagen ( 638) 4789 328.8 4e-89
NP_065084 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744) 2644 188.6 7.5e-47
NP_001841 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744) 2644 188.6 7.5e-47
XP_011533734 (OMIM: 120110,156500) PREDICTED: coll ( 680) 2503 179.3 4.2e-44
NP_000484 (OMIM: 120110,156500) collagen alpha-1(X ( 680) 2503 179.3 4.2e-44
XP_016865737 (OMIM: 120110,156500) PREDICTED: coll ( 680) 2503 179.3 4.2e-44
XP_011533735 (OMIM: 120110,156500) PREDICTED: coll ( 680) 2503 179.3 4.2e-44
XP_006715396 (OMIM: 120110,156500) PREDICTED: coll ( 680) 2503 179.3 4.2e-44
XP_016865738 (OMIM: 120110,156500) PREDICTED: coll ( 680) 2503 179.3 4.2e-44
XP_011522643 (OMIM: 114000,120150,130000,130060,16 (1398) 1667 125.0 2e-27
XP_005257116 (OMIM: 114000,120150,130000,130060,16 (1158) 1610 121.2 2.3e-26
XP_016884751 (OMIM: 301050,303630) PREDICTED: coll (1289) 1599 120.5 4.1e-26
XP_016884750 (OMIM: 301050,303630) PREDICTED: coll (1330) 1599 120.5 4.2e-26
XP_016884752 (OMIM: 301050,303630) PREDICTED: coll (1136) 1595 120.2 4.5e-26
NP_000486 (OMIM: 301050,303630) collagen alpha-5(I (1685) 1599 120.6 4.9e-26
XP_016884749 (OMIM: 301050,303630) PREDICTED: coll (1690) 1599 120.6 4.9e-26
NP_203699 (OMIM: 301050,303630) collagen alpha-5(I (1691) 1599 120.6 4.9e-26
XP_016884748 (OMIM: 301050,303630) PREDICTED: coll (1693) 1599 120.6 4.9e-26
XP_011529151 (OMIM: 301050,303630) PREDICTED: coll (1696) 1599 120.6 4.9e-26
XP_016869755 (OMIM: 120215,130000) PREDICTED: coll (1715) 1588 119.9 8.2e-26
NP_000084 (OMIM: 120215,130000) collagen alpha-1(V (1838) 1588 119.9 8.6e-26
NP_001265003 (OMIM: 120215,130000) collagen alpha- (1838) 1588 119.9 8.6e-26
XP_011517446 (OMIM: 608461,615155) PREDICTED: coll (1352) 1553 117.5 3.4e-25
XP_011517445 (OMIM: 608461,615155) PREDICTED: coll (1353) 1553 117.5 3.4e-25
XP_016855825 (OMIM: 120280,154780,228520,603932,60 (1515) 1545 117.0 5.3e-25
XP_011517444 (OMIM: 608461,615155) PREDICTED: coll (1401) 1538 116.6 6.9e-25
XP_016855826 (OMIM: 120280,154780,228520,603932,60 (1323) 1531 116.1 9.1e-25
NP_542197 (OMIM: 120280,154780,228520,603932,60484 (1690) 1531 116.2 1.1e-24
NP_001177638 (OMIM: 120280,154780,228520,603932,60 (1767) 1531 116.2 1.1e-24
NP_001845 (OMIM: 120280,154780,228520,603932,60484 (1806) 1531 116.2 1.1e-24
NP_542196 (OMIM: 120280,154780,228520,603932,60484 (1818) 1531 116.2 1.1e-24
XP_016855824 (OMIM: 120280,154780,228520,603932,60 (1855) 1531 116.2 1.1e-24
XP_016855823 (OMIM: 120280,154780,228520,603932,60 (1857) 1531 116.2 1.1e-24
XP_011508875 (OMIM: 120190,130000) PREDICTED: coll (1453) 1525 115.7 1.3e-24
XP_016870728 (OMIM: 608461,615155) PREDICTED: coll (1214) 1522 115.4 1.3e-24
NP_000384 (OMIM: 120190,130000) collagen alpha-2(V (1499) 1525 115.7 1.3e-24
XP_016874320 (OMIM: 108300,120140,132450,150600,15 (1305) 1519 115.3 1.5e-24
NP_149162 (OMIM: 108300,120140,132450,150600,15121 (1418) 1519 115.3 1.6e-24
XP_016874319 (OMIM: 108300,120140,132450,150600,15 (1465) 1519 115.3 1.7e-24
NP_001835 (OMIM: 108300,120140,132450,150600,15121 (1487) 1519 115.3 1.7e-24
XP_016874318 (OMIM: 108300,120140,132450,150600,15 (1534) 1519 115.4 1.7e-24
XP_016874317 (OMIM: 108300,120140,132450,150600,15 (1535) 1519 115.4 1.7e-24
NP_690848 (OMIM: 610026) collagen alpha-1(XXII) ch (1626) 1503 114.3 3.7e-24
XP_016882338 (OMIM: 120216) PREDICTED: collagen al ( 966) 1476 112.3 8.8e-24
XP_011526344 (OMIM: 120216) PREDICTED: collagen al (1744) 1476 112.6 1.3e-23
NP_056534 (OMIM: 120216) collagen alpha-3(V) chain (1745) 1476 112.6 1.3e-23
XP_011519350 (OMIM: 120130,175780,180000,607595,61 (1605) 1472 112.3 1.5e-23
XP_011515191 (OMIM: 610026) PREDICTED: collagen al (1058) 1465 111.7 1.5e-23
>>NP_005193 (OMIM: 120252,136800,609140) collagen alpha- (703 aa)
initn: 5227 init1: 5227 opt: 5227 Z-score: 1875.3 bits: 357.5 E(85289): 1e-97
Smith-Waterman score: 5227; 100.0% identity (100.0% similar) in 703 aa overlap (1-703:1-703)
10 20 30 40 50 60
pF1KSD MLGTLTPLSSLLLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGPPFREGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MLGTLTPLSSLLLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGPPFREGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD PGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD GLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD IAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD GHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQAS
610 620 630 640 650 660
670 680 690 700
pF1KSD GGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
:::::::::::::::::::::::::::::::::::::::::::
NP_005 GGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
670 680 690 700
>>XP_005270534 (OMIM: 120252,136800,609140) PREDICTED: c (780 aa)
initn: 5227 init1: 5227 opt: 5227 Z-score: 1874.7 bits: 357.5 E(85289): 1.1e-97
Smith-Waterman score: 5227; 100.0% identity (100.0% similar) in 703 aa overlap (1-703:78-780)
10 20 30
pF1KSD MLGTLTPLSSLLLLLLVLVLGCGPRASSGG
::::::::::::::::::::::::::::::
XP_005 LLSSRVRPHRPCLCWNLPRPLRPESTSTDAMLGTLTPLSSLLLLLLVLVLGCGPRASSGG
50 60 70 80 90 100
40 50 60 70 80 90
pF1KSD GAGGAAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAGGAAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGP
110 120 130 140 150 160
100 110 120 130 140 150
pF1KSD PGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRG
170 180 190 200 210 220
160 170 180 190 200 210
pF1KSD DQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGV
230 240 250 260 270 280
220 230 240 250 260 270
pF1KSD GQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVG
290 300 310 320 330 340
280 290 300 310 320 330
pF1KSD PKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPA
350 360 370 380 390 400
340 350 360 370 380 390
pF1KSD GVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVP
410 420 430 440 450 460
400 410 420 430 440 450
pF1KSD GIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDL
470 480 490 500 510 520
460 470 480 490 500 510
pF1KSD GLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPG
530 540 550 560 570 580
520 530 540 550 560 570
pF1KSD VPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELS
590 600 610 620 630 640
580 590 600 610 620 630
pF1KSD AHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKG
650 660 670 680 690 700
640 650 660 670 680 690
pF1KSD TNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEY
710 720 730 740 750 760
700
pF1KSD IHSSFSGFLLCPT
:::::::::::::
XP_005 IHSSFSGFLLCPT
770 780
>>NP_001281276 (OMIM: 120252,136800,609140) collagen alp (638 aa)
initn: 4789 init1: 4789 opt: 4789 Z-score: 1721.0 bits: 328.8 E(85289): 4e-89
Smith-Waterman score: 4789; 100.0% identity (100.0% similar) in 638 aa overlap (66-703:1-638)
40 50 60 70 80 90
pF1KSD AGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPG
::::::::::::::::::::::::::::::
NP_001 MPLPLLPMDLKGEPGPPGKPGPRGPPGPPG
10 20 30
100 110 120 130 140 150
pF1KSD FPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLR
40 50 60 70 80 90
160 170 180 190 200 210
pF1KSD GPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGL
100 110 120 130 140 150
220 230 240 250 260 270
pF1KSD PGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPP
160 170 180 190 200 210
280 290 300 310 320 330
pF1KSD GVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGL
220 230 240 250 260 270
340 350 360 370 380 390
pF1KSD LGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGD
280 290 300 310 320 330
400 410 420 430 440 450
pF1KSD QGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQ
340 350 360 370 380 390
460 470 480 490 500 510
pF1KSD PGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSP
400 410 420 430 440 450
520 530 540 550 560 570
pF1KSD GITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATP
460 470 480 490 500 510
580 590 600 610 620 630
pF1KSD AFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWV
520 530 540 550 560 570
640 650 660 670 680 690
pF1KSD ALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSF
580 590 600 610 620 630
700
pF1KSD SGFLLCPT
::::::::
NP_001 SGFLLCPT
>>NP_065084 (OMIM: 120251) collagen alpha-1(VIII) chain (744 aa)
initn: 5240 init1: 2003 opt: 2644 Z-score: 962.1 bits: 188.6 E(85289): 7.5e-47
Smith-Waterman score: 2644; 57.2% identity (71.1% similar) in 671 aa overlap (42-702:88-743)
20 30 40 50 60 70
pF1KSD LLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGP-VGPPFREGKGQYLEMPLPL
.:.. .: .: .: ::. :.::
NP_065 VPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGK--EIPLA-
60 70 80 90 100 110
80 90 100 110 120 130
pF1KSD LPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGL
.:.:: :: :.:::::::::::.::. : ::..:.::: : :: .:: : ::.
NP_065 ---SLRGEQGPRGEPGPRGPPGPPGLPGH---GIPGIKGKPGPQGYPG---VGKPGMPGM
120 130 140 150 160
140 150 160 170 180 190
pF1KSD PGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEP
::: : :.:: .:: : .:. : : ::: : ::: :. ::::. :.:: :: .:.
NP_065 PGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDR
170 180 190 200 210 220
200 210 220 230 240 250
pF1KSD GPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGD
::.: ::: : :: :::.: :.:: ::. : : :::: : :.::::. :.:: :
NP_065 GPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGP
230 240 250 260 270 280
260 270 280 290 300
pF1KSD KGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE---PGTRGPP
:. : :: :::.: :. : .::::. :.: :: :.:: : :.::: :: :::
NP_065 LGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPP
290 300 310 320 330 340
310 320 330 340 350 360
pF1KSD GLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAG
:: : : : ::.:::::::: .:::: :: ::: : : :: :: : : ::.:: :
NP_065 GL--P-GIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMG
350 360 370 380 390 400
370 380 390 400 410 420
pF1KSD LPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKG
:: : ::::::.: :: : :: .:. : .:. :::: :: : :: .: ::: ::::
NP_065 PPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKG
410 420 430 440 450 460
430 440 450 460 470 480
pF1KSD EPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPG
: : : :: ::: : :: ::. :.::. ::.:: ::::. ::.::::: :.:: :::::
NP_065 EAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPG
470 480 490 500 510 520
490 500 510 520 530 540
pF1KSD LPGPPGEGRAGEPGTAGPTGPPGVPGSPGITG-P--PGPPGPPGPPGAPGAFDETGIA-G
:::::: :.::.:: :::: ::. : : : ::::::::::: :... : :
NP_065 LPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQG
530 540 550 560 570 580
550 560 570 580 590 600
pF1KSD LHLPN-G-GVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNG
.::. : :..:. .. . : . :. ::::: ::.::: : ::::.. ::::
NP_065 EYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNG
590 600 610 620 630 640
610 620 630 640 650 660
pF1KSD HSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASG
...::: :::::: : :::::::::: :: ::::::.::: :. :::::::::.::::::
NP_065 RQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASG
650 660 670 680 690 700
670 680 690 700
pF1KSD GAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
.::: :::.:.:..::::.:: :::. .:.::::::.:: :
NP_065 SAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM
710 720 730 740
>>NP_001841 (OMIM: 120251) collagen alpha-1(VIII) chain (744 aa)
initn: 5240 init1: 2003 opt: 2644 Z-score: 962.1 bits: 188.6 E(85289): 7.5e-47
Smith-Waterman score: 2644; 57.2% identity (71.1% similar) in 671 aa overlap (42-702:88-743)
20 30 40 50 60 70
pF1KSD LLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGP-VGPPFREGKGQYLEMPLPL
.:.. .: .: .: ::. :.::
NP_001 VPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGK--EIPLA-
60 70 80 90 100 110
80 90 100 110 120 130
pF1KSD LPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGL
.:.:: :: :.:::::::::::.::. : ::..:.::: : :: .:: : ::.
NP_001 ---SLRGEQGPRGEPGPRGPPGPPGLPGH---GIPGIKGKPGPQGYPG---VGKPGMPGM
120 130 140 150 160
140 150 160 170 180 190
pF1KSD PGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEP
::: : :.:: .:: : .:. : : ::: : ::: :. ::::. :.:: :: .:.
NP_001 PGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDR
170 180 190 200 210 220
200 210 220 230 240 250
pF1KSD GPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGD
::.: ::: : :: :::.: :.:: ::. : : :::: : :.::::. :.:: :
NP_001 GPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGP
230 240 250 260 270 280
260 270 280 290 300
pF1KSD KGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE---PGTRGPP
:. : :: :::.: :. : .::::. :.: :: :.:: : :.::: :: :::
NP_001 LGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPP
290 300 310 320 330 340
310 320 330 340 350 360
pF1KSD GLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAG
:: : : : ::.:::::::: .:::: :: ::: : : :: :: : : ::.:: :
NP_001 GL--P-GIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMG
350 360 370 380 390 400
370 380 390 400 410 420
pF1KSD LPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKG
:: : ::::::.: :: : :: .:. : .:. :::: :: : :: .: ::: ::::
NP_001 PPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKG
410 420 430 440 450 460
430 440 450 460 470 480
pF1KSD EPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPG
: : : :: ::: : :: ::. :.::. ::.:: ::::. ::.::::: :.:: :::::
NP_001 EAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPG
470 480 490 500 510 520
490 500 510 520 530 540
pF1KSD LPGPPGEGRAGEPGTAGPTGPPGVPGSPGITG-P--PGPPGPPGPPGAPGAFDETGIA-G
:::::: :.::.:: :::: ::. : : : ::::::::::: :... : :
NP_001 LPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQG
530 540 550 560 570 580
550 560 570 580 590 600
pF1KSD LHLPN-G-GVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNG
.::. : :..:. .. . : . :. ::::: ::.::: : ::::.. ::::
NP_001 EYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNG
590 600 610 620 630 640
610 620 630 640 650 660
pF1KSD HSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASG
...::: :::::: : :::::::::: :: ::::::.::: :. :::::::::.::::::
NP_001 RQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASG
650 660 670 680 690 700
670 680 690 700
pF1KSD GAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
.::: :::.:.:..::::.:: :::. .:.::::::.:: :
NP_001 SAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM
710 720 730 740
>>XP_011533734 (OMIM: 120110,156500) PREDICTED: collagen (680 aa)
initn: 3592 init1: 1912 opt: 2503 Z-score: 912.8 bits: 179.3 E(85289): 4.2e-44
Smith-Waterman score: 2503; 55.5% identity (69.9% similar) in 632 aa overlap (76-702:59-679)
50 60 70 80 90 100
pF1KSD PMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKP
.: ::::: :::: ::: : :::::.:.:
XP_011 TGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP
30 40 50 60 70 80
110 120 130 140 150 160
pF1KSD GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG
::.:.:: :::: : .:: : :::::: : : : .:. : : : ::::::::.::
XP_011 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG
90 100 110 120 130 140
170 180 190 200 210 220
pF1KSD PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP
:.::..::::: :: : :: .: :: .: :: :: : ::. : : :: :: : :
XP_011 PAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ
150 160 170 180 190 200
230 240 250 260 270 280
pF1KSD GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA
:: : :: :.:: : .:.:: :: ::. : :: :: : :: :: : : .:.: :::
XP_011 GPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGA
210 220 230 240 250 260
290 300 310 320 330 340
pF1KSD AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED
:: :: : :.:: ::. : : :: :.: ::::: ::.:::::.:: : .:: :
XP_011 AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPA
270 280 290 300 310 320
350 360 370 380 390 400
pF1KSD GEPGEQGPQGLGGPPGL--P-GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA
: ::. : :: :::: : : :.:: .: ::::::.::.:: : :: .:..: :
XP_011 GLPGK--P-GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD
330 340 350 360 370 380
410 420 430 440 450 460
pF1KSD GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS
:::: ::. :: : .: :: ::::.:: : :: :: .: : :: : :. : ::
XP_011 GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAP
390 400 410 420 430 440
470 480 490 500 510 520
pF1KSD GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG
:::: .:: :: : :.:: ::.:: ::::: . . : ::::::: :: : .: ::
XP_011 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG
450 460 470 480 490 500
530 540 550 560 570 580
pF1KSD PPGPPGPPGAPGAFDETGIAGLHLPNGGVE-GAVLGKGGKPQFGLGE-LSAHATPAFTAV
:::::::: :: .. .:.: .. : . .: : . .. ... . :::..
XP_011 LPGPPGPPGPPGQ----AV----MPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVI
510 520 530 540 550
590 600 610 620 630 640
pF1KSD LTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKN
:.. .:: : :. ::. ::: .. :.: :::::: . :.:::.::::::::.:::.::::
XP_011 LSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKN
560 570 580 590 600 610
650 660 670 680 690 700
pF1KSD NVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
..:. :::::: :::::::::.:...: :::::.:.:. ..:::::.::.::::::::.
XP_011 GTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLV
620 630 640 650 660 670
pF1KSD CPT
:
XP_011 APM
680
>>NP_000484 (OMIM: 120110,156500) collagen alpha-1(X) ch (680 aa)
initn: 3592 init1: 1912 opt: 2503 Z-score: 912.8 bits: 179.3 E(85289): 4.2e-44
Smith-Waterman score: 2503; 55.5% identity (69.9% similar) in 632 aa overlap (76-702:59-679)
50 60 70 80 90 100
pF1KSD PMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKP
.: ::::: :::: ::: : :::::.:.:
NP_000 TGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP
30 40 50 60 70 80
110 120 130 140 150 160
pF1KSD GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG
::.:.:: :::: : .:: : :::::: : : : .:. : : : ::::::::.::
NP_000 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG
90 100 110 120 130 140
170 180 190 200 210 220
pF1KSD PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP
:.::..::::: :: : :: .: :: .: :: :: : ::. : : :: :: : :
NP_000 PAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ
150 160 170 180 190 200
230 240 250 260 270 280
pF1KSD GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA
:: : :: :.:: : .:.:: :: ::. : :: :: : :: :: : : .:.: :::
NP_000 GPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGA
210 220 230 240 250 260
290 300 310 320 330 340
pF1KSD AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED
:: :: : :.:: ::. : : :: :.: ::::: ::.:::::.:: : .:: :
NP_000 AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPA
270 280 290 300 310 320
350 360 370 380 390 400
pF1KSD GEPGEQGPQGLGGPPGL--P-GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA
: ::. : :: :::: : : :.:: .: ::::::.::.:: : :: .:..: :
NP_000 GLPGK--P-GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD
330 340 350 360 370 380
410 420 430 440 450 460
pF1KSD GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS
:::: ::. :: : .: :: ::::.:: : :: :: .: : :: : :. : ::
NP_000 GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAP
390 400 410 420 430 440
470 480 490 500 510 520
pF1KSD GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG
:::: .:: :: : :.:: ::.:: ::::: . . : ::::::: :: : .: ::
NP_000 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG
450 460 470 480 490 500
530 540 550 560 570 580
pF1KSD PPGPPGPPGAPGAFDETGIAGLHLPNGGVE-GAVLGKGGKPQFGLGE-LSAHATPAFTAV
:::::::: :: .. .:.: .. : . .: : . .. ... . :::..
NP_000 LPGPPGPPGPPGQ----AV----MPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVI
510 520 530 540 550
590 600 610 620 630 640
pF1KSD LTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKN
:.. .:: : :. ::. ::: .. :.: :::::: . :.:::.::::::::.:::.::::
NP_000 LSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKN
560 570 580 590 600 610
650 660 670 680 690 700
pF1KSD NVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
..:. :::::: :::::::::.:...: :::::.:.:. ..:::::.::.::::::::.
NP_000 GTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLV
620 630 640 650 660 670
pF1KSD CPT
:
NP_000 APM
680
>>XP_016865737 (OMIM: 120110,156500) PREDICTED: collagen (680 aa)
initn: 3592 init1: 1912 opt: 2503 Z-score: 912.8 bits: 179.3 E(85289): 4.2e-44
Smith-Waterman score: 2503; 55.5% identity (69.9% similar) in 632 aa overlap (76-702:59-679)
50 60 70 80 90 100
pF1KSD PMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKP
.: ::::: :::: ::: : :::::.:.:
XP_016 TGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP
30 40 50 60 70 80
110 120 130 140 150 160
pF1KSD GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG
::.:.:: :::: : .:: : :::::: : : : .:. : : : ::::::::.::
XP_016 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG
90 100 110 120 130 140
170 180 190 200 210 220
pF1KSD PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP
:.::..::::: :: : :: .: :: .: :: :: : ::. : : :: :: : :
XP_016 PAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ
150 160 170 180 190 200
230 240 250 260 270 280
pF1KSD GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA
:: : :: :.:: : .:.:: :: ::. : :: :: : :: :: : : .:.: :::
XP_016 GPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGA
210 220 230 240 250 260
290 300 310 320 330 340
pF1KSD AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED
:: :: : :.:: ::. : : :: :.: ::::: ::.:::::.:: : .:: :
XP_016 AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPA
270 280 290 300 310 320
350 360 370 380 390 400
pF1KSD GEPGEQGPQGLGGPPGL--P-GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA
: ::. : :: :::: : : :.:: .: ::::::.::.:: : :: .:..: :
XP_016 GLPGK--P-GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD
330 340 350 360 370 380
410 420 430 440 450 460
pF1KSD GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS
:::: ::. :: : .: :: ::::.:: : :: :: .: : :: : :. : ::
XP_016 GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAP
390 400 410 420 430 440
470 480 490 500 510 520
pF1KSD GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG
:::: .:: :: : :.:: ::.:: ::::: . . : ::::::: :: : .: ::
XP_016 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG
450 460 470 480 490 500
530 540 550 560 570 580
pF1KSD PPGPPGPPGAPGAFDETGIAGLHLPNGGVE-GAVLGKGGKPQFGLGE-LSAHATPAFTAV
:::::::: :: .. .:.: .. : . .: : . .. ... . :::..
XP_016 LPGPPGPPGPPGQ----AV----MPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVI
510 520 530 540 550
590 600 610 620 630 640
pF1KSD LTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKN
:.. .:: : :. ::. ::: .. :.: :::::: . :.:::.::::::::.:::.::::
XP_016 LSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKN
560 570 580 590 600 610
650 660 670 680 690 700
pF1KSD NVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
..:. :::::: :::::::::.:...: :::::.:.:. ..:::::.::.::::::::.
XP_016 GTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLV
620 630 640 650 660 670
pF1KSD CPT
:
XP_016 APM
680
>>XP_011533735 (OMIM: 120110,156500) PREDICTED: collagen (680 aa)
initn: 3592 init1: 1912 opt: 2503 Z-score: 912.8 bits: 179.3 E(85289): 4.2e-44
Smith-Waterman score: 2503; 55.5% identity (69.9% similar) in 632 aa overlap (76-702:59-679)
50 60 70 80 90 100
pF1KSD PMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKP
.: ::::: :::: ::: : :::::.:.:
XP_011 TGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP
30 40 50 60 70 80
110 120 130 140 150 160
pF1KSD GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG
::.:.:: :::: : .:: : :::::: : : : .:. : : : ::::::::.::
XP_011 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG
90 100 110 120 130 140
170 180 190 200 210 220
pF1KSD PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP
:.::..::::: :: : :: .: :: .: :: :: : ::. : : :: :: : :
XP_011 PAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ
150 160 170 180 190 200
230 240 250 260 270 280
pF1KSD GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA
:: : :: :.:: : .:.:: :: ::. : :: :: : :: :: : : .:.: :::
XP_011 GPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGA
210 220 230 240 250 260
290 300 310 320 330 340
pF1KSD AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED
:: :: : :.:: ::. : : :: :.: ::::: ::.:::::.:: : .:: :
XP_011 AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPA
270 280 290 300 310 320
350 360 370 380 390 400
pF1KSD GEPGEQGPQGLGGPPGL--P-GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA
: ::. : :: :::: : : :.:: .: ::::::.::.:: : :: .:..: :
XP_011 GLPGK--P-GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD
330 340 350 360 370 380
410 420 430 440 450 460
pF1KSD GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS
:::: ::. :: : .: :: ::::.:: : :: :: .: : :: : :. : ::
XP_011 GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAP
390 400 410 420 430 440
470 480 490 500 510 520
pF1KSD GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG
:::: .:: :: : :.:: ::.:: ::::: . . : ::::::: :: : .: ::
XP_011 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG
450 460 470 480 490 500
530 540 550 560 570 580
pF1KSD PPGPPGPPGAPGAFDETGIAGLHLPNGGVE-GAVLGKGGKPQFGLGE-LSAHATPAFTAV
:::::::: :: .. .:.: .. : . .: : . .. ... . :::..
XP_011 LPGPPGPPGPPGQ----AV----MPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVI
510 520 530 540 550
590 600 610 620 630 640
pF1KSD LTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKN
:.. .:: : :. ::. ::: .. :.: :::::: . :.:::.::::::::.:::.::::
XP_011 LSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKN
560 570 580 590 600 610
650 660 670 680 690 700
pF1KSD NVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
..:. :::::: :::::::::.:...: :::::.:.:. ..:::::.::.::::::::.
XP_011 GTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLV
620 630 640 650 660 670
pF1KSD CPT
:
XP_011 APM
680
>>XP_006715396 (OMIM: 120110,156500) PREDICTED: collagen (680 aa)
initn: 3592 init1: 1912 opt: 2503 Z-score: 912.8 bits: 179.3 E(85289): 4.2e-44
Smith-Waterman score: 2503; 55.5% identity (69.9% similar) in 632 aa overlap (76-702:59-679)
50 60 70 80 90 100
pF1KSD PMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKP
.: ::::: :::: ::: : :::::.:.:
XP_006 TGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP
30 40 50 60 70 80
110 120 130 140 150 160
pF1KSD GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG
::.:.:: :::: : .:: : :::::: : : : .:. : : : ::::::::.::
XP_006 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG
90 100 110 120 130 140
170 180 190 200 210 220
pF1KSD PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP
:.::..::::: :: : :: .: :: .: :: :: : ::. : : :: :: : :
XP_006 PAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ
150 160 170 180 190 200
230 240 250 260 270 280
pF1KSD GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA
:: : :: :.:: : .:.:: :: ::. : :: :: : :: :: : : .:.: :::
XP_006 GPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGA
210 220 230 240 250 260
290 300 310 320 330 340
pF1KSD AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED
:: :: : :.:: ::. : : :: :.: ::::: ::.:::::.:: : .:: :
XP_006 AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPA
270 280 290 300 310 320
350 360 370 380 390 400
pF1KSD GEPGEQGPQGLGGPPGL--P-GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA
: ::. : :: :::: : : :.:: .: ::::::.::.:: : :: .:..: :
XP_006 GLPGK--P-GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD
330 340 350 360 370 380
410 420 430 440 450 460
pF1KSD GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS
:::: ::. :: : .: :: ::::.:: : :: :: .: : :: : :. : ::
XP_006 GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAP
390 400 410 420 430 440
470 480 490 500 510 520
pF1KSD GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG
:::: .:: :: : :.:: ::.:: ::::: . . : ::::::: :: : .: ::
XP_006 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG
450 460 470 480 490 500
530 540 550 560 570 580
pF1KSD PPGPPGPPGAPGAFDETGIAGLHLPNGGVE-GAVLGKGGKPQFGLGE-LSAHATPAFTAV
:::::::: :: .. .:.: .. : . .: : . .. ... . :::..
XP_006 LPGPPGPPGPPGQ----AV----MPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVI
510 520 530 540 550
590 600 610 620 630 640
pF1KSD LTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKN
:.. .:: : :. ::. ::: .. :.: :::::: . :.:::.::::::::.:::.::::
XP_006 LSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKN
560 570 580 590 600 610
650 660 670 680 690 700
pF1KSD NVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
..:. :::::: :::::::::.:...: :::::.:.:. ..:::::.::.::::::::.
XP_006 GTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLV
620 630 640 650 660 670
pF1KSD CPT
:
XP_006 APM
680
703 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:56:30 2016 done: Thu Nov 3 08:56:32 2016
Total Scan time: 14.930 Total Display time: 0.160
Function used was FASTA [36.3.4 Apr, 2011]