Result of FASTA (omim) for
pF1KSDF0187
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDF0187, 563 aa
1>>>pF1KSDF0187 563 - 563 aa - 563 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9910+/-0.000452; mu= 13.2869+/- 0.028
mean_var=249.5813+/-50.575, 0's: 0 Z-trim(118.8): 2047 B-trim: 163 in 1/55
Lambda= 0.081184
statistics sampled from 29915 (32224) to 29915 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.378), width: 16
Scan time: 11.840
The best scores are: opt bits E(85289)
NP_001333510 (OMIM: 601260) zinc finger protein wi ( 563) 3835 462.9 1.2e-129
NP_003430 (OMIM: 601260) zinc finger protein with ( 563) 3835 462.9 1.2e-129
XP_011514861 (OMIM: 601260) PREDICTED: zinc finger ( 563) 3835 462.9 1.2e-129
NP_001333509 (OMIM: 601260) zinc finger protein wi ( 527) 3610 436.5 9.8e-122
NP_001273983 (OMIM: 601260) zinc finger protein wi ( 527) 3610 436.5 9.8e-122
NP_001273984 (OMIM: 601260) zinc finger protein wi ( 350) 2381 292.3 1.7e-78
NP_001333508 (OMIM: 601260) zinc finger protein wi ( 321) 1801 224.4 4.5e-58
XP_006720895 (OMIM: 604191) PREDICTED: zinc finger ( 644) 1288 164.7 8.1e-40
NP_001265213 (OMIM: 194510) zinc finger protein 3 ( 446) 1231 157.8 6.7e-38
NP_001305064 (OMIM: 194510) zinc finger protein 3 ( 446) 1231 157.8 6.7e-38
NP_001265219 (OMIM: 194510) zinc finger protein 3 ( 446) 1231 157.8 6.7e-38
NP_116313 (OMIM: 194510) zinc finger protein 3 iso ( 446) 1231 157.8 6.7e-38
NP_001265216 (OMIM: 194510) zinc finger protein 3 ( 446) 1231 157.8 6.7e-38
XP_006720894 (OMIM: 604191) PREDICTED: zinc finger ( 670) 1205 155.0 7e-37
NP_001265221 (OMIM: 194510) zinc finger protein 3 ( 410) 1184 152.2 2.9e-36
XP_016868071 (OMIM: 194510) PREDICTED: zinc finger ( 410) 1184 152.2 2.9e-36
NP_001265220 (OMIM: 194510) zinc finger protein 3 ( 410) 1184 152.2 2.9e-36
XP_006716174 (OMIM: 194510) PREDICTED: zinc finger ( 410) 1184 152.2 2.9e-36
XP_016868072 (OMIM: 194510) PREDICTED: zinc finger ( 410) 1184 152.2 2.9e-36
NP_001305065 (OMIM: 194510) zinc finger protein 3 ( 453) 1156 149.0 3e-35
XP_011529614 (OMIM: 300627) PREDICTED: zinc finger ( 518) 1040 135.5 4e-31
NP_689908 (OMIM: 300627) zinc finger protein 449 [ ( 518) 1040 135.5 4e-31
NP_001276331 (OMIM: 604077) zinc finger protein 13 ( 616) 940 123.9 1.5e-27
XP_016882731 (OMIM: 604077) PREDICTED: zinc finger ( 621) 940 123.9 1.5e-27
XP_016882730 (OMIM: 604077) PREDICTED: zinc finger ( 628) 940 123.9 1.5e-27
XP_016882729 (OMIM: 604077) PREDICTED: zinc finger ( 658) 940 124.0 1.5e-27
NP_001276330 (OMIM: 604077) zinc finger protein 13 ( 658) 940 124.0 1.5e-27
XP_005259268 (OMIM: 604077) PREDICTED: zinc finger ( 670) 940 124.0 1.5e-27
XP_006723426 (OMIM: 604077) PREDICTED: zinc finger ( 670) 940 124.0 1.5e-27
NP_003427 (OMIM: 604077) zinc finger protein 135 i ( 670) 940 124.0 1.5e-27
XP_006723425 (OMIM: 604077) PREDICTED: zinc finger ( 670) 940 124.0 1.5e-27
NP_009065 (OMIM: 604077) zinc finger protein 135 i ( 682) 940 124.0 1.6e-27
XP_016866755 (OMIM: 602240) PREDICTED: zinc finger ( 578) 928 122.5 3.8e-27
NP_006289 (OMIM: 602240) zinc finger protein with ( 578) 928 122.5 3.8e-27
XP_011513172 (OMIM: 602240) PREDICTED: zinc finger ( 578) 928 122.5 3.8e-27
NP_001265048 (OMIM: 602240) zinc finger protein wi ( 578) 928 122.5 3.8e-27
XP_011524533 (OMIM: 609601) PREDICTED: zinc finger ( 534) 927 122.3 3.9e-27
XP_016881531 (OMIM: 609601) PREDICTED: zinc finger ( 534) 927 122.3 3.9e-27
NP_001128650 (OMIM: 609601) zinc finger protein 39 ( 534) 927 122.3 3.9e-27
XP_006722621 (OMIM: 609601) PREDICTED: zinc finger ( 553) 927 122.3 4e-27
XP_011524531 (OMIM: 609601) PREDICTED: zinc finger ( 553) 927 122.3 4e-27
XP_011524532 (OMIM: 609601) PREDICTED: zinc finger ( 553) 927 122.3 4e-27
NP_003424 (OMIM: 604074) zinc finger protein 132 [ ( 706) 918 121.4 9.5e-27
XP_016881831 (OMIM: 614275) PREDICTED: zinc finger ( 434) 913 120.5 1.1e-26
XP_016881832 (OMIM: 614275) PREDICTED: zinc finger ( 434) 913 120.5 1.1e-26
XP_011524816 (OMIM: 614275) PREDICTED: zinc finger ( 499) 913 120.6 1.2e-26
XP_016881830 (OMIM: 614275) PREDICTED: zinc finger ( 499) 913 120.6 1.2e-26
NP_689690 (OMIM: 614275) zinc finger protein 565 [ ( 499) 913 120.6 1.2e-26
NP_001035939 (OMIM: 614275) zinc finger protein 56 ( 499) 913 120.6 1.2e-26
XP_011524814 (OMIM: 614275) PREDICTED: zinc finger ( 499) 913 120.6 1.2e-26
>>NP_001333510 (OMIM: 601260) zinc finger protein with K (563 aa)
initn: 3835 init1: 3835 opt: 3835 Z-score: 2448.7 bits: 462.9 E(85289): 1.2e-129
Smith-Waterman score: 3835; 100.0% identity (100.0% similar) in 563 aa overlap (1-563:1-563)
10 20 30 40 50 60
pF1KSD MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PDSGEEAVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDSGEEAVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KHSSRKPRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KHSSRKPRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WGCQNLARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGCQNLARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD FGEKRDQEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGEKRDQEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SSNFTTPEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSNFTTPEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD VLHQRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHQRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD RIHTGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIHTGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHA
490 500 510 520 530 540
550 560
pF1KSD RERASEYSPASLDAFGAFLKSCV
:::::::::::::::::::::::
NP_001 RERASEYSPASLDAFGAFLKSCV
550 560
>>NP_003430 (OMIM: 601260) zinc finger protein with KRAB (563 aa)
initn: 3835 init1: 3835 opt: 3835 Z-score: 2448.7 bits: 462.9 E(85289): 1.2e-129
Smith-Waterman score: 3835; 100.0% identity (100.0% similar) in 563 aa overlap (1-563:1-563)
10 20 30 40 50 60
pF1KSD MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PDSGEEAVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PDSGEEAVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KHSSRKPRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KHSSRKPRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WGCQNLARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 WGCQNLARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD FGEKRDQEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FGEKRDQEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SSNFTTPEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SSNFTTPEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD VLHQRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VLHQRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD RIHTGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RIHTGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHA
490 500 510 520 530 540
550 560
pF1KSD RERASEYSPASLDAFGAFLKSCV
:::::::::::::::::::::::
NP_003 RERASEYSPASLDAFGAFLKSCV
550 560
>>XP_011514861 (OMIM: 601260) PREDICTED: zinc finger pro (563 aa)
initn: 3835 init1: 3835 opt: 3835 Z-score: 2448.7 bits: 462.9 E(85289): 1.2e-129
Smith-Waterman score: 3835; 100.0% identity (100.0% similar) in 563 aa overlap (1-563:1-563)
10 20 30 40 50 60
pF1KSD MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PDSGEEAVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PDSGEEAVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KHSSRKPRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KHSSRKPRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WGCQNLARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WGCQNLARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD FGEKRDQEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FGEKRDQEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SSNFTTPEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSNFTTPEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD VLHQRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLHQRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD RIHTGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIHTGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHA
490 500 510 520 530 540
550 560
pF1KSD RERASEYSPASLDAFGAFLKSCV
:::::::::::::::::::::::
XP_011 RERASEYSPASLDAFGAFLKSCV
550 560
>>NP_001333509 (OMIM: 601260) zinc finger protein with K (527 aa)
initn: 3610 init1: 3610 opt: 3610 Z-score: 2306.5 bits: 436.5 E(85289): 9.8e-122
Smith-Waterman score: 3610; 100.0% identity (100.0% similar) in 527 aa overlap (37-563:1-527)
10 20 30 40 50 60
pF1KSD REATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFRRFCYQN
::::::::::::::::::::::::::::::
NP_001 MWGQDSTLQDTPPPDPEIFRQRFRRFCYQN
10 20 30
70 80 90 100 110 120
pF1KSD TFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYRPDSGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYRPDSGEE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD AVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHFKHSSRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHFKHSSRK
100 110 120 130 140 150
190 200 210 220 230 240
pF1KSD PRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEEWGCQNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEEWGCQNL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KSD ARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKEFGEKRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKEFGEKRD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KSD QEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSLSSNFTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSLSSNFTT
280 290 300 310 320 330
370 380 390 400 410 420
pF1KSD PEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRI
340 350 360 370 380 390
430 440 450 460 470 480
pF1KSD HTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIHTGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIHTGE
400 410 420 430 440 450
490 500 510 520 530 540
pF1KSD KPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHARERASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHARERASE
460 470 480 490 500 510
550 560
pF1KSD YSPASLDAFGAFLKSCV
:::::::::::::::::
NP_001 YSPASLDAFGAFLKSCV
520
>>NP_001273983 (OMIM: 601260) zinc finger protein with K (527 aa)
initn: 3610 init1: 3610 opt: 3610 Z-score: 2306.5 bits: 436.5 E(85289): 9.8e-122
Smith-Waterman score: 3610; 100.0% identity (100.0% similar) in 527 aa overlap (37-563:1-527)
10 20 30 40 50 60
pF1KSD REATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFRRFCYQN
::::::::::::::::::::::::::::::
NP_001 MWGQDSTLQDTPPPDPEIFRQRFRRFCYQN
10 20 30
70 80 90 100 110 120
pF1KSD TFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYRPDSGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYRPDSGEE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD AVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHFKHSSRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHFKHSSRK
100 110 120 130 140 150
190 200 210 220 230 240
pF1KSD PRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEEWGCQNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEEWGCQNL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KSD ARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKEFGEKRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKEFGEKRD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KSD QEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSLSSNFTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSLSSNFTT
280 290 300 310 320 330
370 380 390 400 410 420
pF1KSD PEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRI
340 350 360 370 380 390
430 440 450 460 470 480
pF1KSD HTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIHTGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIHTGE
400 410 420 430 440 450
490 500 510 520 530 540
pF1KSD KPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHARERASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHARERASE
460 470 480 490 500 510
550 560
pF1KSD YSPASLDAFGAFLKSCV
:::::::::::::::::
NP_001 YSPASLDAFGAFLKSCV
520
>>NP_001273984 (OMIM: 601260) zinc finger protein with K (350 aa)
initn: 2381 init1: 2381 opt: 2381 Z-score: 1530.4 bits: 292.3 E(85289): 1.7e-78
Smith-Waterman score: 2381; 100.0% identity (100.0% similar) in 350 aa overlap (214-563:1-350)
190 200 210 220 230 240
pF1KSD SRKPRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEEWGC
::::::::::::::::::::::::::::::
NP_001 MASALFTADSQAMVKIEDMAVSLILEEWGC
10 20 30
250 260 270 280 290 300
pF1KSD QNLARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKEFGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNLARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKEFGE
40 50 60 70 80 90
310 320 330 340 350 360
pF1KSD KRDQEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSLSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRDQEGKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSLSSN
100 110 120 130 140 150
370 380 390 400 410 420
pF1KSD FTTPEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTTPEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLH
160 170 180 190 200 210
430 440 450 460 470 480
pF1KSD QRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIH
220 230 240 250 260 270
490 500 510 520 530 540
pF1KSD TGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHARER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHARER
280 290 300 310 320 330
550 560
pF1KSD ASEYSPASLDAFGAFLKSCV
::::::::::::::::::::
NP_001 ASEYSPASLDAFGAFLKSCV
340 350
>>NP_001333508 (OMIM: 601260) zinc finger protein with K (321 aa)
initn: 1801 init1: 1801 opt: 1801 Z-score: 1163.6 bits: 224.4 E(85289): 4.5e-58
Smith-Waterman score: 1801; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KSD MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PDSGEEAVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDSGEEAVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEATQSHF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KHSSRKPRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KHSSRKPRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKIEDMAVSLILEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD WGCQNLARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKE
::::::::::::::::::::::::::
NP_001 WGCQNLARRNLSRDNRQENYGSAFPQANVFAAFQHAAHVFCFLEEKGHVRSCHAPEACPA
250 260 270 280 290 300
>>XP_006720895 (OMIM: 604191) PREDICTED: zinc finger pro (644 aa)
initn: 1558 init1: 700 opt: 1288 Z-score: 835.8 bits: 164.7 E(85289): 8.1e-40
Smith-Waterman score: 1312; 41.3% identity (64.5% similar) in 574 aa overlap (13-543:3-562)
10 20 30 40 50 60
pF1KSD MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEEDHMWGQDSTLQDTPPPDPEIFRQRFR
: ..::..:..:::. ::: :.:. : : :.:: . :::
XP_006 MASGPGSQEREGLLIVKL----EEDCAWSQELPPPD-PGPSPEASHLRFR
10 20 30 40
70 80 90 100 110 120
pF1KSD RFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYR
:: .:.. :::::::::.:::: :::::. :::::::::::::::.:::.:.: .:: .
XP_006 RFRFQEAAGPREALSRLQELCHGWLRPEMRTKEQILELLVLEQFLTILPQEIQSRVQELH
50 60 70 80 90 100
130 140 150 160 170
pF1KSD PDSGEEAVTLLEDLELDLSG--QQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEAT--
:.::::::::.::.. .:. ::: .. .: :.: . .::. ..:: :: :. :
XP_006 PESGEEAVTLVEDMQRELGRLRQQVTNHGRGTEVLLEEPLPLETARESPSFKLEPMETER
110 120 130 140 150 160
180 190 200 210 220
pF1KSD ------QSHFKHS-SRKPRLLQSRALPAAHIPAPPHEGSPRDQAMASALFTADSQAMVKI
: . : .: :. .. ::: : . : ::. .:. :.. : ..
XP_006 SPGPRLQELLGPSPQRDPQAVKERALSAPWLSLFPPEGNMEDKEMTGP------QLPESL
170 180 190 200 210
230 240 250 260 270 280
pF1KSD EDMAVSLILEEWGCQNLARRNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSED---
::.:. . :::: :. ..: ::::. ::.: .. . ::.. :: :.. .. ::.
XP_006 EDVAMYISQEEWGHQDPSKRALSRDTVQESYENV-DSLGEEKFENLEGVPSV-CSENIHP
220 230 240 250 260 270
290 300 310 320
pF1KSD -----SASRGETT---------GRSQKEF------GEKRDQEGKTGERQQKNPEEKTRKE
. .:::. ::: .. : .. : .. :. :.: . .
XP_006 QVLLPDQARGEVPWSPELGRPHDRSQGDWAPPPEGGMEQALAGASSGRELGRPKE-LQPK
280 290 300 310 320 330
330 340 350 360 370
pF1KSD KRDSGPAIGKD----KKTITGERGPREKGKGLGRS----FSLSSNFTTPEEVPTGTKSHR
: : ::. .. : .: . .: . :. . : . ... : ..:.
XP_006 KLHLCPLCGKNFSNNSNLIRHQRIHAAERLCMGVDCTEIFGGNPRFLSLHRAHLGEEAHK
340 350 360 370 380 390
380 390 400 410 420 430
pF1KSD CDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRIHTGEKPHECNEC
: ::::::.... : ::. :::::::.:. ::: :: :::: ::: ::::::..: ::
XP_006 CLECGKCFSQNTHLTRHQRTHTGEKPYQCNICGKCFSCNSNLHRHQRTHTGEKPYKCPEC
400 410 420 430 440 450
440 450 460 470 480 490
pF1KSD GKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIHTGEKPYECSECGKAF
:. :.:::::. :::::.::.::.: ::::.::.:: :. :.: : :. : ::::.:
XP_006 GEIFAHSSNLLRHQRIHTGERPYKCPECGKSFSRSSHLVIHERTHERERLYPFSECGEAV
460 470 480 490 500 510
500 510 520 530 540 550
pF1KSD NRNSYLILHRRIHTREKP-YKCTKCGKAFTRSSTLTLHHRIHARERASEYSPASLDAFGA
. .. .. .. : :: ..: :::.: .. :: :.: :. :.
XP_006 SDSTPFLTNHGAHKAEKKLFECLTCGKSFRQGMHLTRHQRTHTGEKPYKCTLCGENFSHR
520 530 540 550 560 570
560
pF1KSD FLKSCV
XP_006 SNLIRHQRIHTGEKPYTCHECGDSFSHSSNRIRHLRTHTGERPYKCSECGESFSRSSRLM
580 590 600 610 620 630
>--
initn: 411 init1: 411 opt: 411 Z-score: 280.7 bits: 62.0 E(85289): 6.7e-09
Smith-Waterman score: 411; 64.6% identity (82.9% similar) in 82 aa overlap (404-485:563-644)
380 390 400 410 420 430
pF1KSD TKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRIHTGEKPH
::.:. ::. :: :::. ::::::::::.
XP_006 KKLFECLTCGKSFRQGMHLTRHQRTHTGEKPYKCTLCGENFSHRSNLIRHQRIHTGEKPY
540 550 560 570 580 590
440 450 460 470 480 490
pF1KSD ECNECGKAFSHSSNLILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIHTGEKPYECSE
:.::: .:::::: : : : :.::.::.:.:::..::.:: : .::: :::
XP_006 TCHECGDSFSHSSNRIRHLRTHTGERPYKCSECGESFSRSSRLMSHQRTHTG
600 610 620 630 640
500 510 520 530 540 550
pF1KSD CGKAFNRNSYLILHRRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHARERASEYSPASLD
>>NP_001265213 (OMIM: 194510) zinc finger protein 3 isof (446 aa)
initn: 2726 init1: 963 opt: 1231 Z-score: 801.4 bits: 157.8 E(85289): 6.7e-38
Smith-Waterman score: 1231; 51.5% identity (74.5% similar) in 369 aa overlap (184-546:9-369)
160 170 180 190 200 210
pF1KSD ARGMVPLDPVQESSSFDLHHEATQSHFKHSSRKPRLLQSRALPAAHIPAPPHEGSPRDQA
:..:. : . :::. ..:: . : :.
NP_001 METQADLVSQEPQALLDSALPS-KVPAFSDKDSLGDEM
10 20 30
220 230 240 250 260 270
pF1KSD MASALFTADSQAMVKIEDMAVSLILEEWGCQNLARRNLSRDNRQENYGSAFPQGGENRNE
.:.::. : :: .: .::.:: .: .:: . :.:.: :: ::::..: :.:.:
NP_001 LAAALLKAKSQELVTFEDVAVYFIRKEWKRLEPAQRDLYRDVMLENYGNVFSLDRETRTE
40 50 60 70 80 90
280 290 300 310 320
pF1KSD NEESTSKAETSEDSASRGETTGRSQKE------FGEKRDQEGKTGERQQKNPEEKTRKEK
:.. : :::. :.: :: ::. : : ..: . . ..: :. ..
NP_001 NDQ-----EISEDTRSHGVLLGRFQKDISQGLKFKEAYEREVSLKRPLGNSPGERLNRKM
100 110 120 130 140 150
330 340 350 360 370 380
pF1KSD RDSGPAIGKDKKTITGERGPREKGKGLGRSFSLSSNFTTPEEVPTGTKSHRCDECGKCFT
: : . ..: : :::. :: . .: ::...::. . ...:.: . :.::::.: :.
NP_001 PDFGQVTVEEKLTPRGERS--EKYNDFGNSFTVNSNLISHQRLPVGDRPHKCDECSKSFN
160 170 180 190 200 210
390 400 410 420 430 440
pF1KSD RSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRIHTGEKPHECNECGKAFSHSSN
:.:.::.:. ::::::::::.::::::: .:.:. ::::::::::.::..:::.:: ::
NP_001 RTSDLIQHQRIHTGEKPYECNECGKAFSQSSHLIQHQRIHTGEKPYECSDCGKTFSCSSA
220 230 240 250 260 270
450 460 470 480 490 500
pF1KSD LILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIHTGEKPYECSECGKAFNRNSYLILH
::::.:::.::::::::::::.:: :: ::.::::::::::: :.::::::.:.: :: :
NP_001 LILHRRIHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHH
280 290 300 310 320 330
510 520 530 540 550 560
pF1KSD RRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHARERASEYSPASLDAFGAFLKSCV
.:::: ::::.:..:::::..:: : :.:::. :. :
NP_001 QRIHTGEKPYECNECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIH
340 350 360 370 380 390
NP_001 TGENPYECSECGKAFRYSSALVRHQRIHTGEKPLNGIGMSKSSLRVTTELNIREST
400 410 420 430 440
>--
initn: 292 init1: 292 opt: 292 Z-score: 207.0 bits: 47.8 E(85289): 8.6e-05
Smith-Waterman score: 292; 72.2% identity (87.0% similar) in 54 aa overlap (435-488:370-423)
410 420 430 440 450 460
pF1KSD YECSECGKAFSLNSNLVLHQRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECN
: ::: :..::.:: :::::.::.::::.
NP_001 YECNECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECS
340 350 360 370 380 390
470 480 490 500 510 520
pF1KSD ECGKAFSQSSDLTKHQRIHTGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGK
:::::: :: :..::::::::::
NP_001 ECGKAFRYSSALVRHQRIHTGEKPLNGIGMSKSSLRVTTELNIREST
400 410 420 430 440
>>NP_001305064 (OMIM: 194510) zinc finger protein 3 isof (446 aa)
initn: 2726 init1: 963 opt: 1231 Z-score: 801.4 bits: 157.8 E(85289): 6.7e-38
Smith-Waterman score: 1231; 51.5% identity (74.5% similar) in 369 aa overlap (184-546:9-369)
160 170 180 190 200 210
pF1KSD ARGMVPLDPVQESSSFDLHHEATQSHFKHSSRKPRLLQSRALPAAHIPAPPHEGSPRDQA
:..:. : . :::. ..:: . : :.
NP_001 METQADLVSQEPQALLDSALPS-KVPAFSDKDSLGDEM
10 20 30
220 230 240 250 260 270
pF1KSD MASALFTADSQAMVKIEDMAVSLILEEWGCQNLARRNLSRDNRQENYGSAFPQGGENRNE
.:.::. : :: .: .::.:: .: .:: . :.:.: :: ::::..: :.:.:
NP_001 LAAALLKAKSQELVTFEDVAVYFIRKEWKRLEPAQRDLYRDVMLENYGNVFSLDRETRTE
40 50 60 70 80 90
280 290 300 310 320
pF1KSD NEESTSKAETSEDSASRGETTGRSQKE------FGEKRDQEGKTGERQQKNPEEKTRKEK
:.. : :::. :.: :: ::. : : ..: . . ..: :. ..
NP_001 NDQ-----EISEDTRSHGVLLGRFQKDISQGLKFKEAYEREVSLKRPLGNSPGERLNRKM
100 110 120 130 140 150
330 340 350 360 370 380
pF1KSD RDSGPAIGKDKKTITGERGPREKGKGLGRSFSLSSNFTTPEEVPTGTKSHRCDECGKCFT
: : . ..: : :::. :: . .: ::...::. . ...:.: . :.::::.: :.
NP_001 PDFGQVTVEEKLTPRGERS--EKYNDFGNSFTVNSNLISHQRLPVGDRPHKCDECSKSFN
160 170 180 190 200 210
390 400 410 420 430 440
pF1KSD RSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRIHTGEKPHECNECGKAFSHSSN
:.:.::.:. ::::::::::.::::::: .:.:. ::::::::::.::..:::.:: ::
NP_001 RTSDLIQHQRIHTGEKPYECNECGKAFSQSSHLIQHQRIHTGEKPYECSDCGKTFSCSSA
220 230 240 250 260 270
450 460 470 480 490 500
pF1KSD LILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIHTGEKPYECSECGKAFNRNSYLILH
::::.:::.::::::::::::.:: :: ::.::::::::::: :.::::::.:.: :: :
NP_001 LILHRRIHTGEKPYECNECGKTFSWSSTLTHHQRIHTGEKPYACNECGKAFSRSSTLIHH
280 290 300 310 320 330
510 520 530 540 550 560
pF1KSD RRIHTREKPYKCTKCGKAFTRSSTLTLHHRIHARERASEYSPASLDAFGAFLKSCV
.:::: ::::.:..:::::..:: : :.:::. :. :
NP_001 QRIHTGEKPYECNECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIH
340 350 360 370 380 390
NP_001 TGENPYECSECGKAFRYSSALVRHQRIHTGEKPLNGIGMSKSSLRVTTELNIREST
400 410 420 430 440
>--
initn: 292 init1: 292 opt: 292 Z-score: 207.0 bits: 47.8 E(85289): 8.6e-05
Smith-Waterman score: 292; 72.2% identity (87.0% similar) in 54 aa overlap (435-488:370-423)
410 420 430 440 450 460
pF1KSD YECSECGKAFSLNSNLVLHQRIHTGEKPHECNECGKAFSHSSNLILHQRIHSGEKPYECN
: ::: :..::.:: :::::.::.::::.
NP_001 YECNECGKAFSQSSHLYQHQRIHTGEKPYECMECGGKFTYSSGLIQHQRIHTGENPYECS
340 350 360 370 380 390
470 480 490 500 510 520
pF1KSD ECGKAFSQSSDLTKHQRIHTGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTKCGK
:::::: :: :..::::::::::
NP_001 ECGKAFRYSSALVRHQRIHTGEKPLNGIGMSKSSLRVTTELNIREST
400 410 420 430 440
563 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:55:48 2016 done: Thu Nov 3 08:55:49 2016
Total Scan time: 11.840 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]