Result of FASTA (ccds) for
pF1KSDF0183
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDF0183, 226 aa
1>>>pF1KSDF0183 226 - 226 aa - 226 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8983+/-0.000731; mu= 13.6812+/- 0.045
mean_var=106.7848+/-21.657, 0's: 0 Z-trim(112.5): 13 B-trim: 0 in 0/52
Lambda= 0.124114
statistics sampled from 13281 (13293) to 13281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.408), width: 16
Scan time: 2.420
The best scores are: opt bits E(32554)
CCDS30558.1 CCNL2 gene_id:81669|Hs108|chr1 ( 226) 1477 274.1 5.3e-74
CCDS30557.1 CCNL2 gene_id:81669|Hs108|chr1 ( 520) 1442 268.1 7.5e-72
CCDS77847.1 CCNL1 gene_id:57018|Hs108|chr3 ( 428) 1057 199.1 3.7e-51
CCDS3178.1 CCNL1 gene_id:57018|Hs108|chr3 ( 526) 1057 199.2 4.2e-51
>>CCDS30558.1 CCNL2 gene_id:81669|Hs108|chr1 (226 aa)
initn: 1477 init1: 1477 opt: 1477 Z-score: 1442.1 bits: 274.1 E(32554): 5.3e-74
Smith-Waterman score: 1477; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KSD MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE
130 140 150 160 170 180
190 200 210 220
pF1KSD RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEGK
::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEGK
190 200 210 220
>>CCDS30557.1 CCNL2 gene_id:81669|Hs108|chr1 (520 aa)
initn: 1442 init1: 1442 opt: 1442 Z-score: 1403.5 bits: 268.1 E(32554): 7.5e-72
Smith-Waterman score: 1442; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KSD MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAE
130 140 150 160 170 180
190 200 210 220
pF1KSD RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEGK
::::::::::::::::::::::::::::::::::::::::
CCDS30 RRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWNYMNDSLRTDVFVRFQPESI
190 200 210 220 230 240
CCDS30 ACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKILQLYARKKVDLTHLEGEVEK
250 260 270 280 290 300
>>CCDS77847.1 CCNL1 gene_id:57018|Hs108|chr3 (428 aa)
initn: 1153 init1: 1031 opt: 1057 Z-score: 1032.0 bits: 199.1 E(32554): 3.7e-51
Smith-Waterman score: 1057; 72.1% identity (90.9% similar) in 219 aa overlap (3-220:7-225)
10 20 30 40 50
pF1KSD MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG-VLIGDRLYSGVLITLENCLLP
..:.::.::.::::.:.... :. . . . : .:::::::: : .:... :.:
CCDS77 MASGPHSTATAAAAASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD DDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSF
...: ::::..::: .:::::..::::::::::::::::::::::::::.::::.:::
CCDS77 EERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD VKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQ
::::.: :.:::..::::::::::::::::::::.::::: :. : ::.:::.:.: :::
CCDS77 VKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQ
130 140 150 160 170 180
180 190 200 210 220
pF1KSD IIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEGK
.::::::::::::::::::::::::::::::::::::: ::::.:
CCDS77 VIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRF
190 200 210 220 230 240
CCDS77 QPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKKPNYELLE
250 260 270 280 290 300
>>CCDS3178.1 CCNL1 gene_id:57018|Hs108|chr3 (526 aa)
initn: 1151 init1: 1031 opt: 1057 Z-score: 1030.9 bits: 199.2 E(32554): 4.2e-51
Smith-Waterman score: 1057; 72.1% identity (90.9% similar) in 219 aa overlap (3-220:7-225)
10 20 30 40 50
pF1KSD MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQG-VLIGDRLYSGVLITLENCLLP
..:.::.::.::::.:.... :. . . . : .:::::::: : .:... :.:
CCDS31 MASGPHSTATAAAAASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD DDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSF
...: ::::..::: .:::::..::::::::::::::::::::::::::.::::.:::
CCDS31 EERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD VKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQ
::::.: :.:::..::::::::::::::::::::.::::: :. : ::.:::.:.: :::
CCDS31 VKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQ
130 140 150 160 170 180
180 190 200 210 220
pF1KSD IIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWVASEGK
.::::::::::::::::::::::::::::::::::::: ::::.:
CCDS31 VIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRF
190 200 210 220 230 240
CCDS31 QPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKKPNYELLE
250 260 270 280 290 300
226 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:55:12 2016 done: Thu Nov 3 08:55:12 2016
Total Scan time: 2.420 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]