FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDF0041, 311 aa
  1>>>pF1KSDF0041 311 - 311 aa - 311 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1396+/-0.000305; mu= 8.3742+/- 0.019
 mean_var=126.1403+/-25.823, 0's: 0 Z-trim(120.3): 1  B-trim: 1888 in 1/60
 Lambda= 0.114195
 statistics sampled from 35402 (35403) to 35402 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.415), width:  16
 Scan time:  8.480

The best scores are:                                      opt bits E(85289)
NP_071436 (OMIM: 615608) V-type immunoglobulin dom ( 311) 2120 359.8   4e-99


>>NP_071436 (OMIM: 615608) V-type immunoglobulin domain-  (311 aa)
 initn: 2120 init1: 2120 opt: 2120  Z-score: 1900.5  bits: 359.8 E(85289): 4e-99
Smith-Waterman score: 2120; 99.7% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KSD MGVPTALEAGSWRWGSLLFALFLAASLGPVAAFKVATPYSLYVCPEGQNVTLTCRLLGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MGVPTALEAGSWRWGSLLFALFLAASLGPVAAFKVATPYSLYVCPEGQNVTLTCRLLGPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DKGHDVTFYKTWYRSSRGEVQTCSERRPIRNLTFQDLHLHHGGHQAANTSHDLAQRHGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 DKGHDVTFYKTWYRSSRGEVQTCSERRPIRNLTFQDLHLHHGGHQAANTSHDLAQRHGLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SASDHHGNFSITMRNLTLLDSGLYCCLVVEIRHHHSEHRVHGAMELQVQTGKDAPSNCVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 SASDHHGNFSITMRNLTLLDSGLYCCLVVEIRHHHSEHRVHGAMELQVQTGKDAPSNCVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YPSSSQESENITAAALATGACIVGILCLPLILLLVYKQRQAASNRRAQELVRMDSNIQGI
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 YPSSSQDSENITAAALATGACIVGILCLPLILLLVYKQRQAASNRRAQELVRMDSNIQGI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ENPGFEASPPAQGIPEAKVRHPLSYVAQRQPSESGRHLLSEPSTPLSPPGPGDVFFPSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 ENPGFEASPPAQGIPEAKVRHPLSYVAQRQPSESGRHLLSEPSTPLSPPGPGDVFFPSLD
              250       260       270       280       290       300

              310 
pF1KSD PVPDSPNFEVI
       :::::::::::
NP_071 PVPDSPNFEVI
              310 




311 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:49:36 2016 done: Thu Nov  3 08:49:37 2016
 Total Scan time:  8.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]