FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDF0041, 311 aa
  1>>>pF1KSDF0041 311 - 311 aa - 311 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0568+/-0.000754; mu= 8.8691+/- 0.046
 mean_var=122.5626+/-24.749, 0's: 0 Z-trim(113.1): 4  B-trim: 122 in 1/53
 Lambda= 0.115850
 statistics sampled from 13767 (13771) to 13767 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.423), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS31218.1 C10orf54 gene_id:64115|Hs108|chr10     ( 311) 2120 364.7 5.1e-101


>>CCDS31218.1 C10orf54 gene_id:64115|Hs108|chr10          (311 aa)
 initn: 2120 init1: 2120 opt: 2120  Z-score: 1927.1  bits: 364.7 E(32554): 5.1e-101
Smith-Waterman score: 2120; 99.7% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KSD MGVPTALEAGSWRWGSLLFALFLAASLGPVAAFKVATPYSLYVCPEGQNVTLTCRLLGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGVPTALEAGSWRWGSLLFALFLAASLGPVAAFKVATPYSLYVCPEGQNVTLTCRLLGPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DKGHDVTFYKTWYRSSRGEVQTCSERRPIRNLTFQDLHLHHGGHQAANTSHDLAQRHGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DKGHDVTFYKTWYRSSRGEVQTCSERRPIRNLTFQDLHLHHGGHQAANTSHDLAQRHGLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SASDHHGNFSITMRNLTLLDSGLYCCLVVEIRHHHSEHRVHGAMELQVQTGKDAPSNCVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SASDHHGNFSITMRNLTLLDSGLYCCLVVEIRHHHSEHRVHGAMELQVQTGKDAPSNCVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YPSSSQESENITAAALATGACIVGILCLPLILLLVYKQRQAASNRRAQELVRMDSNIQGI
       ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YPSSSQDSENITAAALATGACIVGILCLPLILLLVYKQRQAASNRRAQELVRMDSNIQGI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD ENPGFEASPPAQGIPEAKVRHPLSYVAQRQPSESGRHLLSEPSTPLSPPGPGDVFFPSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ENPGFEASPPAQGIPEAKVRHPLSYVAQRQPSESGRHLLSEPSTPLSPPGPGDVFFPSLD
              250       260       270       280       290       300

              310 
pF1KSD PVPDSPNFEVI
       :::::::::::
CCDS31 PVPDSPNFEVI
              310 




311 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:49:35 2016 done: Thu Nov  3 08:49:35 2016
 Total Scan time:  2.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]