Result of FASTA (omim) for
pF1KSDB2508
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB2508, 238 aa
1>>>pF1KSDB2508 238 - 238 aa - 238 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8638+/-0.000271; mu= 18.0555+/- 0.017
mean_var=73.5544+/-14.824, 0's: 0 Z-trim(120.9): 6 B-trim: 1116 in 1/53
Lambda= 0.149544
statistics sampled from 36845 (36851) to 36845 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.432), width: 16
Scan time: 7.220
The best scores are: opt bits E(85289)
NP_001180233 (OMIM: 171300,613403) transmembrane p ( 238) 1599 353.2 2.3e-97
NP_060319 (OMIM: 171300,613403) transmembrane prot ( 238) 1599 353.2 2.3e-97
XP_016859940 (OMIM: 171300,613403) PREDICTED: tran ( 154) 1013 226.6 1.9e-59
XP_016859941 (OMIM: 171300,613403) PREDICTED: tran ( 154) 1013 226.6 1.9e-59
>>NP_001180233 (OMIM: 171300,613403) transmembrane prote (238 aa)
initn: 1599 init1: 1599 opt: 1599 Z-score: 1868.9 bits: 353.2 E(85289): 2.3e-97
Smith-Waterman score: 1599; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KSD MYAPGGAGLPGGRRRRSPGGSALPKQPERSLASALPGALSITALCTALAEPAWLHIHGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYAPGGAGLPGGRRRRSPGGSALPKQPERSLASALPGALSITALCTALAEPAWLHIHGGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD CSRQELGVSDVLGYVHPDLLKDFCMNPQTVLLLRVIAAFCFLGILCSLSAFLLDVFGPKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CSRQELGVSDVLGYVHPDLLKDFCMNPQTVLLLRVIAAFCFLGILCSLSAFLLDVFGPKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVTFAVSFYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVTFAVSFYLV
130 140 150 160 170 180
190 200 210 220 230
pF1KSD AGAGGASILATAANLLRHYPTEEEEQALELLSEMEENEPYPAEYEVINQFQPPPAYTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGAGGASILATAANLLRHYPTEEEEQALELLSEMEENEPYPAEYEVINQFQPPPAYTP
190 200 210 220 230
>>NP_060319 (OMIM: 171300,613403) transmembrane protein (238 aa)
initn: 1599 init1: 1599 opt: 1599 Z-score: 1868.9 bits: 353.2 E(85289): 2.3e-97
Smith-Waterman score: 1599; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KSD MYAPGGAGLPGGRRRRSPGGSALPKQPERSLASALPGALSITALCTALAEPAWLHIHGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MYAPGGAGLPGGRRRRSPGGSALPKQPERSLASALPGALSITALCTALAEPAWLHIHGGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD CSRQELGVSDVLGYVHPDLLKDFCMNPQTVLLLRVIAAFCFLGILCSLSAFLLDVFGPKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CSRQELGVSDVLGYVHPDLLKDFCMNPQTVLLLRVIAAFCFLGILCSLSAFLLDVFGPKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVTFAVSFYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVTFAVSFYLV
130 140 150 160 170 180
190 200 210 220 230
pF1KSD AGAGGASILATAANLLRHYPTEEEEQALELLSEMEENEPYPAEYEVINQFQPPPAYTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AGAGGASILATAANLLRHYPTEEEEQALELLSEMEENEPYPAEYEVINQFQPPPAYTP
190 200 210 220 230
>>XP_016859940 (OMIM: 171300,613403) PREDICTED: transmem (154 aa)
initn: 1013 init1: 1013 opt: 1013 Z-score: 1188.1 bits: 226.6 E(85289): 1.9e-59
Smith-Waterman score: 1013; 100.0% identity (100.0% similar) in 154 aa overlap (85-238:1-154)
60 70 80 90 100 110
pF1KSD HIHGGTCSRQELGVSDVLGYVHPDLLKDFCMNPQTVLLLRVIAAFCFLGILCSLSAFLLD
::::::::::::::::::::::::::::::
XP_016 MNPQTVLLLRVIAAFCFLGILCSLSAFLLD
10 20 30
120 130 140 150 160 170
pF1KSD VFGPKHPALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVTFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFGPKHPALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVTFA
40 50 60 70 80 90
180 190 200 210 220 230
pF1KSD VSFYLVAGAGGASILATAANLLRHYPTEEEEQALELLSEMEENEPYPAEYEVINQFQPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSFYLVAGAGGASILATAANLLRHYPTEEEEQALELLSEMEENEPYPAEYEVINQFQPPP
100 110 120 130 140 150
pF1KSD AYTP
::::
XP_016 AYTP
>>XP_016859941 (OMIM: 171300,613403) PREDICTED: transmem (154 aa)
initn: 1013 init1: 1013 opt: 1013 Z-score: 1188.1 bits: 226.6 E(85289): 1.9e-59
Smith-Waterman score: 1013; 100.0% identity (100.0% similar) in 154 aa overlap (85-238:1-154)
60 70 80 90 100 110
pF1KSD HIHGGTCSRQELGVSDVLGYVHPDLLKDFCMNPQTVLLLRVIAAFCFLGILCSLSAFLLD
::::::::::::::::::::::::::::::
XP_016 MNPQTVLLLRVIAAFCFLGILCSLSAFLLD
10 20 30
120 130 140 150 160 170
pF1KSD VFGPKHPALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVTFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFGPKHPALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVTFA
40 50 60 70 80 90
180 190 200 210 220 230
pF1KSD VSFYLVAGAGGASILATAANLLRHYPTEEEEQALELLSEMEENEPYPAEYEVINQFQPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSFYLVAGAGGASILATAANLLRHYPTEEEEQALELLSEMEENEPYPAEYEVINQFQPPP
100 110 120 130 140 150
pF1KSD AYTP
::::
XP_016 AYTP
238 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:43:36 2016 done: Thu Nov 3 08:43:37 2016
Total Scan time: 7.220 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]