FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB2508, 238 aa
  1>>>pF1KSDB2508 238 - 238 aa - 238 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9178+/-0.000578; mu= 17.9491+/- 0.035
 mean_var=75.9980+/-15.041, 0's: 0 Z-trim(113.8): 3  B-trim: 0 in 0/51
 Lambda= 0.147120
 statistics sampled from 14423 (14425) to 14423 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.443), width:  16
 Scan time:  2.570

The best scores are:                                      opt bits E(32554)
CCDS2018.1 TMEM127 gene_id:55654|Hs108|chr2        ( 238) 1599 347.7 4.1e-96


>>CCDS2018.1 TMEM127 gene_id:55654|Hs108|chr2             (238 aa)
 initn: 1599 init1: 1599 opt: 1599  Z-score: 1839.1  bits: 347.7 E(32554): 4.1e-96
Smith-Waterman score: 1599; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)

               10        20        30        40        50        60
pF1KSD MYAPGGAGLPGGRRRRSPGGSALPKQPERSLASALPGALSITALCTALAEPAWLHIHGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MYAPGGAGLPGGRRRRSPGGSALPKQPERSLASALPGALSITALCTALAEPAWLHIHGGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD CSRQELGVSDVLGYVHPDLLKDFCMNPQTVLLLRVIAAFCFLGILCSLSAFLLDVFGPKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 CSRQELGVSDVLGYVHPDLLKDFCMNPQTVLLLRVIAAFCFLGILCSLSAFLLDVFGPKH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD PALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVTFAVSFYLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 PALKITRRYAFAHILTVLQCATVIGFSYWASELILAQQQQHKKYHGSQVYVTFAVSFYLV
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KSD AGAGGASILATAANLLRHYPTEEEEQALELLSEMEENEPYPAEYEVINQFQPPPAYTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 AGAGGASILATAANLLRHYPTEEEEQALELLSEMEENEPYPAEYEVINQFQPPPAYTP
              190       200       210       220       230        




238 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:43:35 2016 done: Thu Nov  3 08:43:35 2016
 Total Scan time:  2.570 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]