Result of FASTA (omim) for
pF1KSDB1496
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB1496, 277 aa
1>>>pF1KSDB1496 277 - 277 aa - 277 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0341+/-0.0004; mu= 16.4178+/- 0.025
mean_var=58.7515+/-11.861, 0's: 0 Z-trim(112.3): 23 B-trim: 793 in 1/49
Lambda= 0.167326
statistics sampled from 21167 (21190) to 21167 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.248), width: 16
Scan time: 6.760
The best scores are: opt bits E(85289)
NP_001122306 (OMIM: 300401,312080,312920) myelin p ( 277) 1884 463.1 2.6e-130
NP_000524 (OMIM: 300401,312080,312920) myelin prot ( 277) 1884 463.1 2.6e-130
NP_001291933 (OMIM: 300401,312080,312920) myelin p ( 222) 1490 367.9 9.3e-102
NP_955772 (OMIM: 300401,312080,312920) myelin prot ( 242) 835 209.8 4e-54
NP_001001994 (OMIM: 300051) neuronal membrane glyc ( 246) 503 129.7 5.4e-30
NP_001305658 (OMIM: 300051) neuronal membrane glyc ( 269) 503 129.7 5.8e-30
NP_005269 (OMIM: 300051) neuronal membrane glycopr ( 265) 496 128.0 1.8e-29
XP_016884921 (OMIM: 300051) PREDICTED: neuronal me ( 286) 496 128.0 2e-29
XP_005274546 (OMIM: 300051) PREDICTED: neuronal me ( 288) 496 128.0 2e-29
NP_001001996 (OMIM: 300051) neuronal membrane glyc ( 305) 496 128.0 2.1e-29
XP_011543799 (OMIM: 300051) PREDICTED: neuronal me ( 309) 496 128.0 2.1e-29
NP_001001995 (OMIM: 300051) neuronal membrane glyc ( 328) 496 128.0 2.2e-29
XP_016884923 (OMIM: 300051) PREDICTED: neuronal me ( 179) 484 125.0 9.9e-29
NP_963886 (OMIM: 601275) neuronal membrane glycopr ( 267) 455 118.1 1.8e-26
NP_001248377 (OMIM: 601275) neuronal membrane glyc ( 271) 448 116.4 5.8e-26
NP_005268 (OMIM: 601275) neuronal membrane glycopr ( 278) 448 116.4 5.9e-26
NP_963885 (OMIM: 601275) neuronal membrane glycopr ( 278) 448 116.4 5.9e-26
XP_016884922 (OMIM: 300051) PREDICTED: neuronal me ( 202) 444 115.4 8.8e-26
NP_001248376 (OMIM: 601275) neuronal membrane glyc ( 243) 294 79.2 8.2e-15
XP_016863525 (OMIM: 601275) PREDICTED: neuronal me ( 215) 219 61.1 2.1e-09
XP_006714246 (OMIM: 601275) PREDICTED: neuronal me ( 215) 219 61.1 2.1e-09
XP_011530179 (OMIM: 601275) PREDICTED: neuronal me ( 215) 219 61.1 2.1e-09
>>NP_001122306 (OMIM: 300401,312080,312920) myelin prote (277 aa)
initn: 1884 init1: 1884 opt: 1884 Z-score: 2460.4 bits: 463.1 E(85289): 2.6e-130
Smith-Waterman score: 1884; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
190 200 210 220 230 240
250 260 270
pF1KSD IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
:::::::::::::::::::::::::::::::::::::
NP_001 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
250 260 270
>>NP_000524 (OMIM: 300401,312080,312920) myelin proteoli (277 aa)
initn: 1884 init1: 1884 opt: 1884 Z-score: 2460.4 bits: 463.1 E(85289): 2.6e-130
Smith-Waterman score: 1884; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
190 200 210 220 230 240
250 260 270
pF1KSD IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
:::::::::::::::::::::::::::::::::::::
NP_000 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
250 260 270
>>NP_001291933 (OMIM: 300401,312080,312920) myelin prote (222 aa)
initn: 1490 init1: 1490 opt: 1490 Z-score: 1947.9 bits: 367.9 E(85289): 9.3e-102
Smith-Waterman score: 1490; 100.0% identity (100.0% similar) in 221 aa overlap (57-277:2-222)
30 40 50 60 70 80
pF1KSD FGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYGALL
::::::::::::::::::::::::::::::
NP_001 MDYEYLINVIHAFQYVIYGTASFFFLYGALL
10 20 30
90 100 110 120 130 140
pF1KSD LAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD GHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIGSLCADARM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIGSLCADARM
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD YGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFA
160 170 180 190 200 210
270
pF1KSD VLKLMGRGTKF
:::::::::::
NP_001 VLKLMGRGTKF
220
>>NP_955772 (OMIM: 300401,312080,312920) myelin proteoli (242 aa)
initn: 833 init1: 833 opt: 835 Z-score: 1092.8 bits: 209.8 E(85289): 4e-54
Smith-Waterman score: 1538; 87.4% identity (87.4% similar) in 277 aa overlap (1-277:1-242)
10 20 30 40 50 60
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSAT----
70 80 90 100 110
130 140 150 160 170 180
pF1KSD QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
:::::::::::::::::::::::::::::
NP_955 -------------------------------FVGITYALTVVWLLVFACSAVPVYIYFNT
120 130 140
190 200 210 220 230 240
pF1KSD WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 WTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF
150 160 170 180 190 200
250 260 270
pF1KSD IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
:::::::::::::::::::::::::::::::::::::
NP_955 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
210 220 230 240
>>NP_001001994 (OMIM: 300051) neuronal membrane glycopro (246 aa)
initn: 940 init1: 503 opt: 503 Z-score: 659.5 bits: 129.7 E(85289): 5.4e-30
Smith-Waterman score: 906; 50.5% identity (72.4% similar) in 275 aa overlap (1-273:1-239)
10 20 30 40 50 60
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
:: .::: .:: :.:.:::::: ::: :::::::::: ::.:: ..: .:: : .:.
NP_001 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
: .::. .:::::: :::::::: .:::::::::.::... :..::: ::. .:.
NP_001 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----
70 80 90 100 110
130 140 150 160 170 180
pF1KSD QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
:: .::.: :.:: ::. :::::....:
NP_001 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI
120 130 140
190 200 210 220 230
pF1KSD WTTCQSIAFPSKTSASIG--SLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFH
:.::. : : .:... : ..:.: :.::..::::::::.::: : .::.: :: :..:
NP_001 WSTCEVIKSP-QTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYH
150 160 170 180 190 200
240 250 260 270
pF1KSD LFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
:::.: .::.::...:: .:.:.:::.::::. .:
NP_001 LFIVACAGAGATVIALLIYMMATTYNYAVLKFKSREDCCTKF
210 220 230 240
>>NP_001305658 (OMIM: 300051) neuronal membrane glycopro (269 aa)
initn: 790 init1: 503 opt: 503 Z-score: 658.9 bits: 129.7 E(85289): 5.8e-30
Smith-Waterman score: 866; 49.1% identity (70.8% similar) in 271 aa overlap (1-269:1-235)
10 20 30 40 50 60
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEY
:: .::: .:: :.:.:::::: ::: :::::::::: ::.:: ..: .:: : .:.
NP_001 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD LINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGG
: .::. .:::::: :::::::: .:::::::::.::... :..::: ::. .:.
NP_001 LSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----
70 80 90 100 110
130 140 150 160 170 180
pF1KSD QKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNT
:: .::.: :.:: ::. :::::....:
NP_001 -------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNI
120 130 140
190 200 210 220 230
pF1KSD WTTCQSIAFPSKTSASIG--SLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFH
:.::. : : .:... : ..:.: :.::..::::::::.::: : .::.: :: :..:
NP_001 WSTCEVIKSP-QTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYH
150 160 170 180 190 200
240 250 260 270
pF1KSD LFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
:::.: .::.::...:. :.. . :.: ::
NP_001 LFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQ
210 220 230 240 250 260
NP_001 LNSYT
>>NP_005269 (OMIM: 300051) neuronal membrane glycoprotei (265 aa)
initn: 926 init1: 489 opt: 496 Z-score: 649.9 bits: 128.0 E(85289): 1.8e-29
Smith-Waterman score: 899; 50.4% identity (72.3% similar) in 274 aa overlap (2-273:21-258)
10 20 30 40
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALT
: .::: .:: :.:.:::::: ::: :::::::::: ::.
NP_005 MKPAMETAAEENTEQSQERKGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD GTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIF
:: ..: .:: : .:. : .::. .:::::: :::::::: .:::::::::.::...
NP_005 GTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD GDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTV
:..::: ::. .:. :: .::.: :
NP_005 GEFKTTACGRCISGM-----------------------------------FVFLTYVLGV
130 140
170 180 190 200 210
pF1KSD VWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIG--SLCADARMYGVLPWNAFPGKV
.:: ::. :::::....: :.::. : : .:... : ..:.: :.::..::::::::.
NP_005 AWLGVFGFSAVPVFMFYNIWSTCEVIKSP-QTNGTTGVEQICVDIRQYGIIPWNAFPGKI
150 160 170 180 190 200
220 230 240 250 260 270
pF1KSD CGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
::: : .::.: :: :..::::.: .::.::...:: .:.:.:::.::::. .:
NP_005 CGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSREDCCTK
210 220 230 240 250 260
NP_005 F
>>XP_016884921 (OMIM: 300051) PREDICTED: neuronal membra (286 aa)
initn: 926 init1: 489 opt: 496 Z-score: 649.4 bits: 128.0 E(85289): 2e-29
Smith-Waterman score: 899; 50.4% identity (72.3% similar) in 274 aa overlap (2-273:42-279)
10 20 30
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVAL
: .::: .:: :.:.:::::: ::: ::::
XP_016 RYHWMYPGSKNHQYHPVPTLGDRASPLSSPGCFECCIKCLGGVPYASLVATILCFSGVAL
20 30 40 50 60 70
40 50 60 70 80 90
pF1KSD FCGCGHEALTGTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYGALLLAEGF
:::::: ::.:: ..: .:: : .:. : .::. .:::::: :::::::: .::::::
XP_016 FCGCGHVALAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGF
80 90 100 110 120 130
100 110 120 130 140 150
pF1KSD YTTGAVRQIFGDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDK
:::.::... :..::: ::. .:.
XP_016 YTTSAVKELHGEFKTTACGRCISGM-----------------------------------
140 150
160 170 180 190 200
pF1KSD FVGITYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIG--SLCADARMYGV
:: .::.: :.:: ::. :::::....: :.::. : : .:... : ..:.: :.::.
XP_016 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSP-QTNGTTGVEQICVDIRQYGI
160 170 180 190 200 210
210 220 230 240 250 260
pF1KSD LPWNAFPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLK
.::::::::.::: : .::.: :: :..::::.: .::.::...:: .:.:.:::.::::
XP_016 IPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLK
220 230 240 250 260 270
270
pF1KSD LMGRGTKF
. .:
XP_016 FKSREDCCTKF
280
>>XP_005274546 (OMIM: 300051) PREDICTED: neuronal membra (288 aa)
initn: 776 init1: 489 opt: 496 Z-score: 649.3 bits: 128.0 E(85289): 2e-29
Smith-Waterman score: 859; 48.9% identity (70.7% similar) in 270 aa overlap (2-269:21-254)
10 20 30 40
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALT
: .::: .:: :.:.:::::: ::: :::::::::: ::.
XP_005 MKPAMETAAEENTEQSQERKGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KSD GTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIF
:: ..: .:: : .:. : .::. .:::::: :::::::: .:::::::::.::...
XP_005 GTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KSD GDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTV
:..::: ::. .:. :: .::.: :
XP_005 GEFKTTACGRCISGM-----------------------------------FVFLTYVLGV
130 140
170 180 190 200 210
pF1KSD VWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIG--SLCADARMYGVLPWNAFPGKV
.:: ::. :::::....: :.::. : : .:... : ..:.: :.::..::::::::.
XP_005 AWLGVFGFSAVPVFMFYNIWSTCEVIKSP-QTNGTTGVEQICVDIRQYGIIPWNAFPGKI
150 160 170 180 190 200
220 230 240 250 260 270
pF1KSD CGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF
::: : .::.: :: :..::::.: .::.::...:. :.. . :.: ::
XP_005 CGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASKMQAYQD
210 220 230 240 250 260
XP_005 IKAKEEQELQDIQSRSKEQLNSYT
270 280
>>NP_001001996 (OMIM: 300051) neuronal membrane glycopro (305 aa)
initn: 926 init1: 489 opt: 496 Z-score: 649.0 bits: 128.0 E(85289): 2.1e-29
Smith-Waterman score: 899; 50.4% identity (72.3% similar) in 274 aa overlap (2-273:61-298)
10 20 30
pF1KSD MGLLECCARCLVGAPFASLVATGLCFFGVAL
: .::: .:: :.:.:::::: ::: ::::
NP_001 RYHWMYPGSKNHQYHPVPTLGDRASPLSSPGCFECCIKCLGGVPYASLVATILCFSGVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KSD FCGCGHEALTGTEKLIETYFSKNYQDYEYLINVIHAFQYVIYGTASFFFLYGALLLAEGF
:::::: ::.:: ..: .:: : .:. : .::. .:::::: :::::::: .::::::
NP_001 FCGCGHVALAGTVAILEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGF
100 110 120 130 140 150
100 110 120 130 140 150
pF1KSD YTTGAVRQIFGDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDK
:::.::... :..::: ::. .:.
NP_001 YTTSAVKELHGEFKTTACGRCISGM-----------------------------------
160 170
160 170 180 190 200
pF1KSD FVGITYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIG--SLCADARMYGV
:: .::.: :.:: ::. :::::....: :.::. : : .:... : ..:.: :.::.
NP_001 FVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSP-QTNGTTGVEQICVDIRQYGI
180 190 200 210 220 230
210 220 230 240 250 260
pF1KSD LPWNAFPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLK
.::::::::.::: : .::.: :: :..::::.: .::.::...:: .:.:.:::.::::
NP_001 IPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLK
240 250 260 270 280 290
270
pF1KSD LMGRGTKF
. .:
NP_001 FKSREDCCTKF
300
277 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:41:23 2016 done: Thu Nov 3 08:41:24 2016
Total Scan time: 6.760 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]