FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDB1384, 674 aa
  1>>>pF1KSDB1384 674 - 674 aa - 674 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7150+/- 0.001; mu= 12.9686+/- 0.060
 mean_var=99.8840+/-20.403, 0's: 0 Z-trim(106.3): 20  B-trim: 134 in 1/50
 Lambda= 0.128329
 statistics sampled from 8877 (8882) to 8877 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.273), width:  16
 Scan time:  3.310

The best scores are:                                      opt bits E(32554)
CCDS583.1 NDC1 gene_id:55706|Hs108|chr1            ( 674) 4503 844.7       0


>>CCDS583.1 NDC1 gene_id:55706|Hs108|chr1                 (674 aa)
 initn: 4503 init1: 4503 opt: 4503  Z-score: 4509.0  bits: 844.7 E(32554):    0
Smith-Waterman score: 4503; 100.0% identity (100.0% similar) in 674 aa overlap (1-674:1-674)

               10        20        30        40        50        60
pF1KSD MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWLSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHSFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHSFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD HAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGYSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGYSY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD SLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD WISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 WISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD FPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD NWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD GPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIM
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD YFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD AVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASA
              610       620       630       640       650       660

              670    
pF1KSD EHQKRLQQFLEFKE
       ::::::::::::::
CCDS58 EHQKRLQQFLEFKE
              670    




674 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:35:16 2016 done: Thu Nov  3 08:35:16 2016
 Total Scan time:  3.310 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]