Result of FASTA (omim) for
pF1KSDB0234
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB0234, 1203 aa
1>>>pF1KSDB0234 1203 - 1203 aa - 1203 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7867+/-0.000474; mu= 10.0890+/- 0.030
mean_var=119.5162+/-23.960, 0's: 0 Z-trim(112.7): 409 B-trim: 122 in 1/51
Lambda= 0.117317
statistics sampled from 21265 (21686) to 21265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.254), width: 16
Scan time: 14.710
The best scores are: opt bits E(85289)
NP_065136 (OMIM: 603581) protocadherin-9 isoform 2 (1203) 7902 1349.7 0
NP_001305301 (OMIM: 603581) protocadherin-9 isofor (1195) 7589 1296.7 0
XP_011533401 (OMIM: 603581) PREDICTED: protocadher (1054) 6564 1123.2 0
NP_001305302 (OMIM: 603581) protocadherin-9 isofor (1161) 6560 1122.5 0
XP_016876109 (OMIM: 603581) PREDICTED: protocadher (1066) 6551 1121.0 0
NP_982354 (OMIM: 603581) protocadherin-9 isoform 1 (1237) 6551 1121.0 0
XP_016876108 (OMIM: 603581) PREDICTED: protocadher (1237) 6551 1121.0 0
XP_005266465 (OMIM: 603581) PREDICTED: protocadher (1019) 6543 1119.6 0
XP_016876110 (OMIM: 603581) PREDICTED: protocadher (1019) 6543 1119.6 0
NP_001305303 (OMIM: 603581) protocadherin-9 isofor (1032) 6543 1119.6 0
XP_016884908 (OMIM: 300246) PREDICTED: protocadher (1308) 4379 753.4 2.2e-216
XP_016885570 (OMIM: 400022) PREDICTED: protocadher (1329) 4356 749.5 3.3e-215
XP_016885569 (OMIM: 400022) PREDICTED: protocadher (1329) 4356 749.5 3.3e-215
XP_016885568 (OMIM: 400022) PREDICTED: protocadher (1329) 4356 749.5 3.3e-215
NP_116755 (OMIM: 400022) protocadherin-11 Y-linked (1340) 4356 749.5 3.3e-215
NP_001161834 (OMIM: 300246) protocadherin-11 X-lin (1310) 4294 739.0 4.6e-212
XP_016884909 (OMIM: 300246) PREDICTED: protocadher (1339) 4294 739.0 4.7e-212
XP_016884911 (OMIM: 300246) PREDICTED: protocadher (1025) 3967 683.6 1.7e-195
XP_011529217 (OMIM: 300246) PREDICTED: protocadher (1054) 3967 683.6 1.7e-195
XP_011529218 (OMIM: 300246) PREDICTED: protocadher (1054) 3967 683.6 1.7e-195
NP_001161833 (OMIM: 300246) protocadherin-11 X-lin (1065) 3964 683.1 2.5e-195
XP_016884910 (OMIM: 300246) PREDICTED: protocadher (1076) 3964 683.1 2.5e-195
NP_001161835 (OMIM: 300246) protocadherin-11 X-lin (1329) 3964 683.1 3.1e-195
NP_116751 (OMIM: 300246) protocadherin-11 X-linked (1337) 3964 683.1 3.1e-195
NP_001161832 (OMIM: 300246) protocadherin-11 X-lin (1339) 3964 683.1 3.1e-195
XP_016884905 (OMIM: 300246) PREDICTED: protocadher (1345) 3964 683.1 3.1e-195
XP_011529216 (OMIM: 300246) PREDICTED: protocadher (1347) 3964 683.1 3.1e-195
NP_116750 (OMIM: 300246) protocadherin-11 X-linked (1347) 3964 683.1 3.1e-195
XP_011529215 (OMIM: 300246) PREDICTED: protocadher (1358) 3964 683.2 3.1e-195
XP_016884907 (OMIM: 300246) PREDICTED: protocadher (1366) 3964 683.2 3.1e-195
XP_011529214 (OMIM: 300246) PREDICTED: protocadher (1368) 3964 683.2 3.1e-195
XP_011529212 (OMIM: 300246) PREDICTED: protocadher (1376) 3964 683.2 3.2e-195
XP_011529213 (OMIM: 300246) PREDICTED: protocadher (1376) 3964 683.2 3.2e-195
XP_016884906 (OMIM: 300246) PREDICTED: protocadher (1376) 3964 683.2 3.2e-195
NP_001265548 (OMIM: 400022) protocadherin-11 Y-lin (1037) 3942 679.4 3.2e-194
XP_016885571 (OMIM: 400022) PREDICTED: protocadher (1037) 3942 679.4 3.2e-194
NP_116753 (OMIM: 400022) protocadherin-11 Y-linked (1037) 3942 679.4 3.2e-194
NP_116754 (OMIM: 400022) protocadherin-11 Y-linked (1048) 3942 679.4 3.3e-194
XP_016885572 (OMIM: 400022) PREDICTED: protocadher ( 956) 3795 654.5 9.3e-187
XP_016876197 (OMIM: 614449) PREDICTED: protocadher ( 951) 2086 365.2 1.1e-99
NP_073754 (OMIM: 614449) protocadherin-20 precurso ( 951) 2086 365.2 1.1e-99
XP_005248220 (OMIM: 602988) PREDICTED: protocadher (1275) 1687 297.8 3e-79
XP_016863751 (OMIM: 602988) PREDICTED: protocadher (1277) 1681 296.7 6.2e-79
XP_005248221 (OMIM: 602988) PREDICTED: protocadher (1267) 1678 296.2 8.7e-79
XP_011512145 (OMIM: 602988) PREDICTED: protocadher (1276) 1594 282.0 1.7e-74
XP_011512144 (OMIM: 602988) PREDICTED: protocadher (1296) 1510 267.8 3.2e-70
XP_016863757 (OMIM: 602988) PREDICTED: protocadher (1182) 1509 267.6 3.3e-70
XP_016863758 (OMIM: 602988) PREDICTED: protocadher (1182) 1509 267.6 3.3e-70
XP_016863752 (OMIM: 602988) PREDICTED: protocadher (1200) 1508 267.5 3.8e-70
XP_016863753 (OMIM: 602988) PREDICTED: protocadher (1200) 1508 267.5 3.8e-70
>>NP_065136 (OMIM: 603581) protocadherin-9 isoform 2 pre (1203 aa)
initn: 7902 init1: 7902 opt: 7902 Z-score: 7229.0 bits: 1349.7 E(85289): 0
Smith-Waterman score: 7902; 100.0% identity (100.0% similar) in 1203 aa overlap (1-1203:1-1203)
10 20 30 40 50 60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD GPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 GPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLV
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD NGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 NGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPKE
1150 1160 1170 1180 1190 1200
pF1KSD HQL
:::
NP_065 HQL
>>NP_001305301 (OMIM: 603581) protocadherin-9 isoform 3 (1195 aa)
initn: 7598 init1: 6543 opt: 7589 Z-score: 6942.8 bits: 1296.7 E(85289): 0
Smith-Waterman score: 7589; 97.0% identity (98.1% similar) in 1204 aa overlap (1-1203:1-1195)
10 20 30 40 50 60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
910 920 930 940 950 960
970 980 990 1000 1010
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQ-SQRRVTF
:::::::::::::::::::::::::::::::::::::::::::::::::::: ... .
NP_001 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KSD HLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNS
..: :. :..:. .: . :: .:::::::::::::::::::::::::
NP_001 NIPVTPQKCPSSTGFHIQE-----NEESH----YEPQDEFYDQASPDKRTEADGNSDPNS
1030 1040 1050 1060 1070
1080 1090 1100 1110 1120 1130
pF1KSD DGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKL
1080 1090 1100 1110 1120 1130
1140 1150 1160 1170 1180 1190
pF1KSD VNGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPK
1140 1150 1160 1170 1180 1190
1200
pF1KSD EHQL
::::
NP_001 EHQL
>>XP_011533401 (OMIM: 603581) PREDICTED: protocadherin-9 (1054 aa)
initn: 7060 init1: 6553 opt: 6564 Z-score: 6006.1 bits: 1123.2 E(85289): 0
Smith-Waterman score: 6564; 98.4% identity (99.4% similar) in 1032 aa overlap (1-1031:1-1030)
10 20 30 40 50 60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
::::::::::::::::::::::::::::::::::::::::::::::::::::... . :
XP_011 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQGKQTLIF-
970 980 990 1000 1010
1030 1040 1050 1060 1070
pF1KSD LPDGSQE-SCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNS
:.:... .: .
XP_011 -PSGAEDFQCHNVRIIFPNFPILFVMSHEYVSEKST
1020 1030 1040 1050
>>NP_001305302 (OMIM: 603581) protocadherin-9 isoform 4 (1161 aa)
initn: 7014 init1: 6549 opt: 6560 Z-score: 6001.7 bits: 1122.5 E(85289): 0
Smith-Waterman score: 7516; 96.5% identity (96.5% similar) in 1203 aa overlap (1-1203:1-1161)
10 20 30 40 50 60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQ--------
970 980 990 1000 1010
1030 1040 1050 1060 1070 1080
pF1KSD LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
::::::::::::::::::::::::::
NP_001 ----------------------------------PQDEFYDQASPDKRTEADGNSDPNSD
1020 1030
1090 1100 1110 1120 1130 1140
pF1KSD GPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLV
1040 1050 1060 1070 1080 1090
1150 1160 1170 1180 1190 1200
pF1KSD NGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPKE
1100 1110 1120 1130 1140 1150
pF1KSD HQL
:::
NP_001 HQL
1160
>>XP_016876109 (OMIM: 603581) PREDICTED: protocadherin-9 (1066 aa)
initn: 6543 init1: 6543 opt: 6551 Z-score: 5994.1 bits: 1121.0 E(85289): 0
Smith-Waterman score: 6551; 97.9% identity (98.9% similar) in 1039 aa overlap (1-1038:1-1039)
10 20 30 40 50 60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
910 920 930 940 950 960
970 980 990 1000 1010
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQ-SQRRVTF
:::::::::::::::::::::::::::::::::::::::::::::::::::: ... .
XP_016 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KSD HLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNS
..: :. :..:. .:
XP_016 NIPVTPQKCPSSTGFHIQENEESHYEILQSKGVYSYQHVTIKCKQC
1030 1040 1050 1060
>>NP_982354 (OMIM: 603581) protocadherin-9 isoform 1 pre (1237 aa)
initn: 6543 init1: 6543 opt: 6551 Z-score: 5993.0 bits: 1121.0 E(85289): 0
Smith-Waterman score: 7812; 97.2% identity (97.2% similar) in 1235 aa overlap (1-1201:1-1235)
10 20 30 40 50 60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
910 920 930 940 950 960
970 980 990 1000 1010
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQ--------
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
970 980 990 1000 1010 1020
1020 1030 1040
pF1KSD --------------------------SQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
::::::::::::::::::::::::::::::::::
NP_982 NIPVTPQKCPSSTGFHIQENEESHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
1030 1040 1050 1060 1070 1080
1050 1060 1070 1080 1090 1100
pF1KSD SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
1090 1100 1110 1120 1130 1140
1110 1120 1130 1140 1150 1160
pF1KSD NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_982 NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
1150 1160 1170 1180 1190 1200
1170 1180 1190 1200
pF1KSD NEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL
:::::::::::::::::::::::::::::::::::
NP_982 NEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL
1210 1220 1230
>>XP_016876108 (OMIM: 603581) PREDICTED: protocadherin-9 (1237 aa)
initn: 6543 init1: 6543 opt: 6551 Z-score: 5993.0 bits: 1121.0 E(85289): 0
Smith-Waterman score: 7812; 97.2% identity (97.2% similar) in 1235 aa overlap (1-1201:1-1235)
10 20 30 40 50 60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
910 920 930 940 950 960
970 980 990 1000 1010
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQ--------
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
970 980 990 1000 1010 1020
1020 1030 1040
pF1KSD --------------------------SQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
::::::::::::::::::::::::::::::::::
XP_016 NIPVTPQKCPSSTGFHIQENEESHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
1030 1040 1050 1060 1070 1080
1050 1060 1070 1080 1090 1100
pF1KSD SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
1090 1100 1110 1120 1130 1140
1110 1120 1130 1140 1150 1160
pF1KSD NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
1150 1160 1170 1180 1190 1200
1170 1180 1190 1200
pF1KSD NEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL
:::::::::::::::::::::::::::::::::::
XP_016 NEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL
1210 1220 1230
>>XP_005266465 (OMIM: 603581) PREDICTED: protocadherin-9 (1019 aa)
initn: 6543 init1: 6543 opt: 6543 Z-score: 5987.1 bits: 1119.6 E(85289): 0
Smith-Waterman score: 6543; 100.0% identity (100.0% similar) in 1012 aa overlap (1-1012:1-1012)
10 20 30 40 50 60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQFPSNGKR
970 980 990 1000 1010
1030 1040 1050 1060 1070 1080
pF1KSD LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
>>XP_016876110 (OMIM: 603581) PREDICTED: protocadherin-9 (1019 aa)
initn: 6543 init1: 6543 opt: 6543 Z-score: 5987.1 bits: 1119.6 E(85289): 0
Smith-Waterman score: 6543; 100.0% identity (100.0% similar) in 1012 aa overlap (1-1012:1-1012)
10 20 30 40 50 60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQFPSNGKR
970 980 990 1000 1010
1030 1040 1050 1060 1070 1080
pF1KSD LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
>>NP_001305303 (OMIM: 603581) protocadherin-9 isoform 5 (1032 aa)
initn: 6543 init1: 6543 opt: 6543 Z-score: 5987.0 bits: 1119.6 E(85289): 0
Smith-Waterman score: 6543; 100.0% identity (100.0% similar) in 1012 aa overlap (1-1012:1-1012)
10 20 30 40 50 60
pF1KSD MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFH
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQVNEHFYWS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD LPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSD
NP_001 ISTAYKCPVNQY
1030
1203 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:31:33 2016 done: Thu Nov 3 08:31:35 2016
Total Scan time: 14.710 Total Display time: 0.510
Function used was FASTA [36.3.4 Apr, 2011]