Result of FASTA (ccds) for
pF1KSDB0004
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDB0004, 1086 aa
1>>>pF1KSDB0004 1086 - 1086 aa - 1086 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.2761+/-0.000996; mu= -3.5509+/- 0.060
mean_var=353.4685+/-70.044, 0's: 0 Z-trim(115.7): 27 B-trim: 0 in 0/53
Lambda= 0.068218
statistics sampled from 16228 (16252) to 16228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.499), width: 16
Scan time: 5.780
The best scores are: opt bits E(32554)
CCDS10410.1 CAPN15 gene_id:6650|Hs108|chr16 (1086) 7635 766.0 0
CCDS47436.1 CAPN11 gene_id:11131|Hs108|chr6 ( 739) 560 69.6 3e-11
>>CCDS10410.1 CAPN15 gene_id:6650|Hs108|chr16 (1086 aa)
initn: 7635 init1: 7635 opt: 7635 Z-score: 4076.4 bits: 766.0 E(32554): 0
Smith-Waterman score: 7635; 100.0% identity (100.0% similar) in 1086 aa overlap (1-1086:1-1086)
10 20 30 40 50 60
pF1KSD MATVGEWSCVRCTFLNPAGQRQCSICEAPRHKPDLNHILRLSVEEQKWPCARCTFRNFLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MATVGEWSCVRCTFLNPAGQRQCSICEAPRHKPDLNHILRLSVEEQKWPCARCTFRNFLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KEACEVCGFTPEPAPGAAFLPVLNGVLPKPPAILGEPKGSCQEEAGPVRTAGLVATEPAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KEACEVCGFTPEPAPGAAFLPVLNGVLPKPPAILGEPKGSCQEEAGPVRTAGLVATEPAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD GQCEDKDEEEKEEQEEEEGAAEPRGGWACPRCTLHNTPVASSCSVCGGPRRLSLPRIPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQCEDKDEEEKEEQEEEEGAAEPRGGWACPRCTLHNTPVASSCSVCGGPRRLSLPRIPPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD ALVVPEVVAPAGFHVVPAAPPPGLPGEGAEANPPATSQGPAAEPEPPRVPPFSPFSSTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALVVPEVVAPAGFHVVPAAPPPGLPGEGAEANPPATSQGPAAEPEPPRVPPFSPFSSTLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD NNPVPRSRREVPPQLQPPVPEAAQPSPSAGCRGAPQGSGWAGASRLAELLSGKRLSVLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NNPVPRSRREVPPQLQPPVPEAAQPSPSAGCRGAPQGSGWAGASRLAELLSGKRLSVLEE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EATEGGTSRVEAGSSTSGSDIIDLAGDTVRYTPASPSSPDFTTWSCAKCTLRNPTVAPRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EATEGGTSRVEAGSSTSGSDIIDLAGDTVRYTPASPSSPDFTTWSCAKCTLRNPTVAPRC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SACGCSKLHGFQEHGEPPTHCPDCGADKPSPCGRSCGRVSSAQKAARVLPERPGQWACPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SACGCSKLHGFQEHGEPPTHCPDCGADKPSPCGRSCGRVSSAQKAARVLPERPGQWACPA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD CTLLNALRAKHCAACHTPQLLVAQRRGAAPLRRRESMHVEQRRQTDEGEAKALWENIVAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CTLLNALRAKHCAACHTPQLLVAQRRGAAPLRRRESMHVEQRRQTDEGEAKALWENIVAF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD CRENNVSFVDDSFPPGPESVGFPAGDSVQQRVRQWLRPQEINCSVFRDHRATWSVFHTLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CRENNVSFVDDSFPPGPESVGFPAGDSVQQRVRQWLRPQEINCSVFRDHRATWSVFHTLR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD PSDILQGLLGNCWFLSALAVLAERPDLVERVMVTRSLCAEGAYQVRLCKDGTWTTVLVDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PSDILQGLLGNCWFLSALAVLAERPDLVERVMVTRSLCAEGAYQVRLCKDGTWTTVLVDD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD MLPCDEAGCLLFSQAQRKQLWVALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLPCDEAGCLLFSQAQRKQLWVALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD LQLSSTNPREEPVDTDLIWAKMLSSKEAGFLMGASCGGGNMKVDDSAYESLGLRPRHAYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LQLSSTNPREEPVDTDLIWAKMLSSKEAGFLMGASCGGGNMKVDDSAYESLGLRPRHAYS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD ILDVRDVQGTRLLRLRNPWGRFSWNGSWSDEWPHWPGHLRGELMPHGSSEGVFWMEYGDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILDVRDVQGTRLLRLRNPWGRFSWNGSWSDEWPHWPGHLRGELMPHGSSEGVFWMEYGDF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD VRYFDSVDICKVHSDWQEARVQGCFPSSASAPVGVTALTVLERASLEFALFQEGSRRSDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VRYFDSVDICKVHSDWQEARVQGCFPSSASAPVGVTALTVLERASLEFALFQEGSRRSDA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD VDSHLLDLCILVFRATFGSGGHLSLGRLLAHSKRAVKKFVSCDVMLEPGEYAVVCCAFNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VDSHLLDLCILVFRATFGSGGHLSLGRLLAHSKRAVKKFVSCDVMLEPGEYAVVCCAFNH
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD WGPPLPGTPAPQASSPSAGVPRASPEPPGHVLAVYSSRLVMVEPVEAQPTTLADAIILLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WGPPLPGTPAPQASSPSAGVPRASPEPPGHVLAVYSSRLVMVEPVEAQPTTLADAIILLT
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD ESRGERHEGREGMTCYYLTHGWAGLIVVVENRHPKAYLHVQCDCTDSFNVVSTRGSLRTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ESRGERHEGREGMTCYYLTHGWAGLIVVVENRHPKAYLHVQCDCTDSFNVVSTRGSLRTQ
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD DSVPPLHRQVLVILSQLEGNAGFSITHRLAHRKAAQAFLSDWTASKGTHSPPLTPEVAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DSVPPLHRQVLVILSQLEGNAGFSITHRLAHRKAAQAFLSDWTASKGTHSPPLTPEVAGL
1030 1040 1050 1060 1070 1080
pF1KSD HGPRPL
::::::
CCDS10 HGPRPL
>>CCDS47436.1 CAPN11 gene_id:11131|Hs108|chr6 (739 aa)
initn: 549 init1: 206 opt: 560 Z-score: 315.5 bits: 69.6 E(32554): 3e-11
Smith-Waterman score: 586; 35.1% identity (59.6% similar) in 342 aa overlap (474-795:66-380)
450 460 470 480 490 500
pF1KSD QRRGAAPLRRRESMHVEQRRQTDEGEAKALWENIVAFCRENNVSFVDDSFPPGPESVGF-
.:.. : : ... : : :: : :.::
CCDS47 TGMVAHINNSRLKAKGVGQHDNAQNFGNQSFEELRAACLRKGELFEDPLFPAEPSSLGFK
40 50 60 70 80 90
510 520 530 540 550
pF1KSD ---PAGDSVQQRVRQWLRPQEI-NCSVFRDHRATWSVFHTLRPSDILQGLLGNCWFLSAL
: . .::. .: ::..: : .: .. . :.:: ::.::.::.:.:.
CCDS47 DLGPNSKNVQNI--SWQRPKDIINNPLF--------IMDGISPTDICQGILGDCWLLAAI
100 110 120 130 140
560 570 580 590 600 610
pF1KSD AVLAERPDLVERVMVTRSLCAE----GAYQVRLCKDGTWTTVLVDDMLPCDEAGCLLFSQ
. :. : :. :: : :. . : .. .. . : :..:.::: :: . .. .
CCDS47 GSLTTCPKLLYRV-VPRGQSFKKNYAGIFHFQIWQFGQWVNVVVDDRLPTKNDKLVFVHS
150 160 170 180 190 200
620 630 640 650 660 670
pF1KSD AQRKQLWVALIEKALAKLHGSYFALQAGRAIEGLATLTGAPCESLALQLSSTNPREEPVD
..:...: ::.::: ::: ::: ::..: ..::: .::. .:. :: . : .
CCDS47 TERSEFWSALLEKAYAKLSGSYEALSGGSTMEGLEDFTGGVAQSFQLQ-------RPPQN
210 220 230 240 250
680 690 700 710 720
pF1KSD TDLIWAKMLSSKEAGFLMGASCGGGNMKV-DDSAYESLG---LRPRHAYSILDVRDVQ--
. : . : . ::: : ..: .:: ::. : ::::. ..::.
CCDS47 LLRLLRKAV---ERSSLMGCS-----IEVTSDSELESMTDKMLVRGHAYSVTGLQDVHYR
260 270 280 290 300
730 740 750 760 770 780
pF1KSD GT--RLLRLRNPWGRFSWNGSWSD---EWPHWPGHLRGELMPHGSSEGVFWMEYGDFVRY
: :.:.::::::. :::.::: :: . . .. .:. : . .: ::: : ::.
CCDS47 GKMETLIRVRNPWGRIEWNGAWSDSAREWEEVASDIQMQLL-HKTEDGEFWMSYQDFLNN
310 320 330 340 350 360
790 800 810 820 830 840
pF1KSD FDSVDICKVHSDWQEARVQGCFPSSASAPVGVTALTVLERASLEFALFQEGSRRSDAVDS
: ..::.. :
CCDS47 FTLLEICNLTPDTLSGDYKSYWHTTFYEGSWRRGSSAGGCRNHPGTFWTNPQFKISLPEG
370 380 390 400 410 420
1086 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:02:45 2016 done: Thu Nov 3 08:02:46 2016
Total Scan time: 5.780 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]