Result of FASTA (ccds) for
pF1KSDA1994
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA1994, 1073 aa
1>>>pF1KSDA1994 1073 - 1073 aa - 1073 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.4050+/-0.00111; mu= -8.3442+/- 0.067
mean_var=431.0705+/-89.727, 0's: 0 Z-trim(114.9): 76 B-trim: 3 in 1/53
Lambda= 0.061773
statistics sampled from 15406 (15473) to 15406 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.475), width: 16
Scan time: 6.020
The best scores are: opt bits E(32554)
CCDS31966.1 TSC22D1 gene_id:8848|Hs108|chr13 (1073) 6910 630.9 4.5e-180
CCDS58291.1 TSC22D1 gene_id:8848|Hs108|chr13 ( 570) 3592 335.0 2.9e-91
CCDS9392.1 TSC22D1 gene_id:8848|Hs108|chr13 ( 144) 653 72.6 7.1e-13
CCDS3149.1 TSC22D2 gene_id:9819|Hs108|chr3 ( 780) 613 69.6 3.1e-11
>>CCDS31966.1 TSC22D1 gene_id:8848|Hs108|chr13 (1073 aa)
initn: 6910 init1: 6910 opt: 6910 Z-score: 3346.3 bits: 630.9 E(32554): 4.5e-180
Smith-Waterman score: 6910; 99.9% identity (100.0% similar) in 1073 aa overlap (1-1073:1-1073)
10 20 30 40 50 60
pF1KSD MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGSGSASALNAAGTGVGSNATSSEDFPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGSGSASALNAAGTGVGSNATSSEDFPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PSLLQPPPPAASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSLLQPPPPAASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ISASISSNNSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ISASISSNNSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHHHPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHHHPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD HVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPSTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPSTTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GIGINSVTGTSTVNNVNITAVGSFNPNVTSSILGNVNISTSNIPSAAGVSVGPGVTSGVN
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS31 GIGINSVTGTSTVNNVNITAVGSFNPNVTSSMLGNVNISTSNIPSAAGVSVGPGVTSGVN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLDSSSEPFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLDSSSEPFK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIEVTSERESTSGSSVSSSVSTLSHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIEVTSERESTSGSSVSSSVSTLSHY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TESVGSGEMGAPTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TESVGSGEMGAPTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSIS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QSQISQVQLQSQELSYQQKQGLQPVPLQATMSAATGIQPSPVNVVGVTSALGQQPSISSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QSQISQVQLQSQELSYQQKQGLQPVPLQATMSAATGIQPSPVNVVGVTSALGQQPSISSL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AQPQLPYSQAAPPVQTPLPGAPPPQQLQYGQQQPMVSTQMAPGHVKSVTQNPASEYVQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AQPQLPYSQAAPPVQTPLPGAPPPQQLQYGQQQPMVSTQMAPGHVKSVTQNPASEYVQQQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD PILQTAMSSGQPSSAGVGAGTTVIPVAQPQGIQLPVQPTAVPAQPAGASVQPVGQAPAAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PILQTAMSSGQPSSAGVGAGTTVIPVAQPQGIQLPVQPTAVPAQPAGASVQPVGQAPAAV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD SAVPTGSQIANIGQQANIPTAVQQPSTQVPPSVIQQGAPPSSQVVPPAQTGIIHQGVQTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SAVPTGSQIANIGQQANIPTAVQQPSTQVPPSVIQQGAPPSSQVVPPAQTGIIHQGVQTS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD APSLPQQLVIASQSSLLTVPPQPQGVEPVAQGIVSQQLPAVSSLPSASSISVTSQVSSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 APSLPQQLVIASQSSLLTVPPQPQGVEPVAQGIVSQQLPAVSSLPSASSISVTSQVSSTG
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD PSGMPSAPTNLVPPQNIAQTPATQNGNLVQSVSQPPLIATNTNLPLAQQIPLSSTQFSAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSGMPSAPTNLVPPQNIAQTPATQNGNLVQSVSQPPLIATNTNLPLAQQIPLSSTQFSAQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD SLAQAIGSQIEDARRAAEPSLVGLPQTISGDSGGMSAVSDGSSSSLAASASLFPLKVLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLAQAIGSQIEDARRAAEPSLVGLPQTISGDSGGMSAVSDGSSSSLAASASLFPLKVLPL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD TTPLVDGEDESSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TTPLVDGEDESSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070
pF1KSD EQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTTQPPAQPASQGSGPTA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTTQPPAQPASQGSGPTA
1030 1040 1050 1060 1070
>>CCDS58291.1 TSC22D1 gene_id:8848|Hs108|chr13 (570 aa)
initn: 3592 init1: 3592 opt: 3592 Z-score: 1752.0 bits: 335.0 E(32554): 2.9e-91
Smith-Waterman score: 3592; 99.8% identity (100.0% similar) in 556 aa overlap (1-556:1-556)
10 20 30 40 50 60
pF1KSD MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGSGSASALNAAGTGVGSNATSSEDFPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGSGSASALNAAGTGVGSNATSSEDFPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PSLLQPPPPAASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PSLLQPPPPAASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ISASISSNNSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ISASISSNNSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHHHPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHHHPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD HVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPSTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPSTTG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GIGINSVTGTSTVNNVNITAVGSFNPNVTSSILGNVNISTSNIPSAAGVSVGPGVTSGVN
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS58 GIGINSVTGTSTVNNVNITAVGSFNPNVTSSMLGNVNISTSNIPSAAGVSVGPGVTSGVN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLDSSSEPFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLDSSSEPFK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIEVTSERESTSGSSVSSSVSTLSHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIEVTSERESTSGSSVSSSVSTLSHY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TESVGSGEMGAPTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TESVGSGEMGAPTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSIS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD QSQISQVQLQSQELSYQQKQGLQPVPLQATMSAATGIQPSPVNVVGVTSALGQQPSISSL
::::::::::::::::
CCDS58 QSQISQVQLQSQELSYLTMKVVLLIVYLCM
550 560 570
>>CCDS9392.1 TSC22D1 gene_id:8848|Hs108|chr13 (144 aa)
initn: 653 init1: 653 opt: 653 Z-score: 344.6 bits: 72.6 E(32554): 7.1e-13
Smith-Waterman score: 653; 99.0% identity (100.0% similar) in 105 aa overlap (969-1073:40-144)
940 950 960 970 980 990
pF1KSD SDGSSSSLAASASLFPLKVLPLTTPLVDGEDESSSGASVVAIDNKIEQAMDLVKSHLMYA
:.::::::::::::::::::::::::::::
CCDS93 AMDLGVYQLRHFSISFLSSLLGTENASVRLDNSSSGASVVAIDNKIEQAMDLVKSHLMYA
10 20 30 40 50 60
1000 1010 1020 1030 1040 1050
pF1KSD VREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTT
70 80 90 100 110 120
1060 1070
pF1KSD QPPAQPASQGSGPTA
:::::::::::::::
CCDS93 QPPAQPASQGSGPTA
130 140
>>CCDS3149.1 TSC22D2 gene_id:9819|Hs108|chr3 (780 aa)
initn: 794 init1: 337 opt: 613 Z-score: 315.3 bits: 69.6 E(32554): 3.1e-11
Smith-Waterman score: 1027; 32.2% identity (53.7% similar) in 1007 aa overlap (106-1071:7-775)
80 90 100 110 120 130
pF1KSD GPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQISASISSNNSIAEDT
:::: ::::::: ::...::. :::
CCDS31 MSKMPAKKKSCFQITSVTTAQVATSIT------EDT
10 20 30
140 150 160 170 180 190
pF1KSD ESYDDLDESHTEDLSSSEILDVSLSRATDLGEPE---RSSSEETLNNFQEAETPGAVSPN
:: :: :::.:::.:: ::.:: ::::: : : :::::::::: .:::::.::::
CCDS31 ESLDDPDESRTEDVSS-EIFDV--SRATDYGPEEVCERSSSEETLNNVGDAETPGTVSPN
40 50 60 70 80
200 210 220 230 240 250
pF1KSD QPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHQIHHGHHLQHGHHHPSHVAVASASITGG
....: :. .:.:.: .::
CCDS31 ----------------LLLDG-----------QL---------------AAAAAAPANGG
90 100
260 270 280 290 300 310
pF1KSD PPSSPVSRKLSTTGSSDSITPVAPTSAVSSSGSPASVMTNMRAPSTTGGIGINSVTGTST
. :: . :..:. .: : :......:: :.. ::
CCDS31 ---GVVSAR-SVSGA------LASTLAAAATSAPA--------PGAPGG-----------
110 120 130
320 330 340 350 360 370
pF1KSD VNNVNITAVGSFNPNVTSSILGNVNISTSNIPSAAGVSVGPGVTSGVNVNILSGMGNGTI
:. :: :.::
CCDS31 -------------------------------PQLAGSSAGP-------------------
140
380 390 400 410 420 430
pF1KSD SSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLD-SSSEPFKKGRWTCTEFYE
:...:. : ::. .:::::.::: .:.::...::::: :.::
CCDS31 -----VTAAPS--------------QPPTTCSSRFRVIKLDHGSGEPYRRGRWTCMEYYE
150 160 170 180
440 450 460 470 480 490
pF1KSD KENAVPATEGVLINKVVETVKQNP-IEVTSERESTSGSSVSSSVSTLSHYTESVGSGEMG
.. ... .... . .... .. :.::.: :.. .: : ... . . : : :
CCDS31 RD-----SDSSVLTRSGDCIRHSSTFDQTAERDSGLGATGGSVVVVVASMQGAHGP-ESG
190 200 210 220 230 240
500 510 520 530 540 550
pF1KSD APTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSISQSQISQVQLQ
. . .. .: .....::. : ..:. :: : . ...::
CCDS31 TDSSLTAVSQLPPSEKMSQPT----PAQPQSFSVGQPQP-PPPPVGGAVAQS--------
250 260 270 280
560 570 580 590 600 610
pF1KSD SQELSYQQKQGLQPVPLQATMSAATGIQPSPVNVVGVTSALGQQPSISSLAQPQLPYSQA
: : . : :. :.:: ::. .. : : :. .:::: . .
CCDS31 SAPLPPFPGAATGPQPM---MAAAQPSQPQGAGPGGQT----LPPTNVTLAQPAM----S
290 300 310 320 330
620 630 640 650 660
pF1KSD APPVQTPLPGAPPPQQ-LQYGQQQPMVSTQMAPGHVKSVTQNPASEYVQQQPILQTAMSS
:: : ::: :: :.. :: :. :::. : . :::.::. :
CCDS31 LPPQPGPAVGAPAAQQPQQFAYPQP----QIPPGHLLPVQPSGQSEYLQQHVAGLQPPSP
340 350 360 370 380 390
670 680 690 700 710 720
pF1KSD GQPSSAGVGAG---TTVIPVAQPQGIQLPVQPTAVPAQPAGASVQPVGQAPAAVSAVPTG
.::::.:..:. ....::. :. ..: :: ::: :: ..: : .. :
CCDS31 AQPSSTGAAASPATAATLPVGTGQNA------SSVGAQLMGASSQP-SEAMAPRTGPAQG
400 410 420 430 440
730 740 750 760 770 780
pF1KSD SQIANIGQQANIPTAVQQPSTQVPPSVIQQGAPPSSQVVPPAQTGIIHQGVQTSAPSLPQ
.:.: : :: : :::... :. :: : : : :.: :
CCDS31 GQVA--------PC---QP-TGVPPATV--GG-----VVQPC-LGPAGAGQPQSVP--PP
450 460 470 480
790 800 810 820 830 840
pF1KSD QLVIASQSSLLTVPPQPQGVEPVAQGIVSQQLPAVSSLPSASSISVTSQVSSTGPSGMPS
:. .... : .:: :..: : :. ..::. ::. :.:.:: . ::.
CCDS31 QM--GGSGPLSAVPGGPHAVVP---GV--PNVPAAVPAPSVPSVSTTSVT-------MPN
490 500 510 520 530
850 860 870 880 890 900
pF1KSD APTNLVPPQNIA-QTPATQNGNLVQSVSQPPLIATNTNLPLAQQIPLSS-TQFSAQSLAQ
.:. :. :... .::........: :. : : . . : . .: :. .::..:. :
CCDS31 VPAPLAQSQQLSSHTPVSRSSSIIQHVGLP-LAPGTHSAPTS--LPQSDLSQFQTQT--Q
540 550 560 570 580
910 920 930 940 950
pF1KSD AIGSQIEDARRAAEPSLVGLPQT-ISGDSGGMSAVSDGSSSSLAASASLFPLK-----VL
. .:..:.:: .:: ::: .: . . .:. ..::: .: :.. :.
CCDS31 PLVGQVDDTRRKSEP----LPQPPLSLIAENKPVVKPPVADSLANPLQLTPMNSLATSVF
590 600 610 620 630 640
960 970 980 990
pF1KSD PLTTPLVDGEDE------------------------SSSGASVVAIDNKIEQAMDLVKSH
.. : :::... :.::..::::::::::::::::::
CCDS31 SIAIP-VDGDEDRNPSTAFYQAFHLNTLKESKSLWDSASGGGVVAIDNKIEQAMDLVKSH
650 660 670 680 690 700
1000 1010 1020 1030 1040 1050
pF1KSD LMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQP
:::::::::::::::::::.:.:: ::.:: :::.:.: .::.:. . : ..: .:.:
CCDS31 LMYAVREEVEVLKEQIKELVERNSLLERENALLKSLSSNDQLSQLPT--QQANPGSTSQQ
710 720 730 740 750
1060 1070
pF1KSD QGTTQPPAQPASQGSGPTA
:.. : ::.. . :
CCDS31 QAVIAQPPQPTQPPQQPNVSSA
760 770 780
1073 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:57:13 2016 done: Thu Nov 3 07:57:14 2016
Total Scan time: 6.020 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]